Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

59965108 .. 59965440

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCAGCTAGCTTCTGAAAAAGTGGATATTTATGCTTTTGGGGTGGTTTTGCTGGAGCTCATCTCAGCCAAAGAGGACATCAAAGGGAAGTTATTTAAGGAATCCATCAAATTTTTAGGAGGGGGAGATCGTGAAGGAGGTTTCCTCGAGCAGCTAAGGAGCTTCATGGATCAGAAGTTAGAAGATTACCCTCTTGCAGAGGCTCTGTGTTTGGCTGTTTTAGCCAAGGCATGTGTGGAAGATGATCCTCTCCACAGGCCATCGATCGATGATATCATTGAAGTCCTTGCCAGAATGGTAGGACCAGAAGTCGATCGTCACGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.28

Weight (kDa)

4.67

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	180, 242
AcsI	RAATTY	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	284
AhdI	GACNNNNNGTC	1 cut(s)	311
AluBI	AGCT	5 cut(s)	10, 14, 61, 157, 165
AluI	AGCT	5 cut(s)	10, 14, 61, 157, 165
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	180, 242
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	116, 271
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	305
BmtI	GCTAGC	1 cut(s)	14
BplI	GAGNNNNNCTC	4 cut(s)	50, 82, 132, 164
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	6
Bsa29I	ATCGAT	2 cut(s)	266, 270
BsaJI	CCNNGG	1 cut(s)	228
BseCI	ATCGAT	2 cut(s)	266, 270
BseDI	CCNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	20, 81
BseXI	GCAGC	1 cut(s)	166
Bsh1285I	CGRYCG	2 cut(s)	270, 319
BshFI	GGCC	1 cut(s)	262
BshVI	ATCGAT	2 cut(s)	266, 270
BsiEI	CGRYCG	2 cut(s)	270, 319
BsiHKAI	GWGCWC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	149
BsnI	GGCC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	5 cut(s)	130, 172, 247, 267, 316
Bsp1720I	GCTNAGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	2 cut(s)	19, 80
BspDI	ATCGAT	2 cut(s)	266, 270
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	2 cut(s)	180, 242
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	130, 172, 247, 267, 316
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	6, 67, 158
BstKTI	GATC	5 cut(s)	133, 175, 250, 270, 319
BstMBI	GATC	5 cut(s)	130, 172, 247, 267, 316
BstMCI	CGRYCG	2 cut(s)	270, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 224
BstNSI	RCATGY	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	166
Bsu15I	ATCGAT	2 cut(s)	266, 270
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	2 cut(s)	266, 270
Cac8I	GCNNGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	2 cut(s)	266, 270
CviAII	CATG	2 cut(s)	169, 234
DdeI	CTNAG	3 cut(s)	6, 67, 158
DpnI	GATC	5 cut(s)	132, 174, 249, 269, 318
DpnII	GATC	5 cut(s)	130, 172, 247, 267, 316
DriI	GACNNNNNGTC	1 cut(s)	311
Eam1105I	GACNNNNNGTC	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	172, 237
FaiI	YATR	3 cut(s)	36, 170, 235
FatI	CATG	2 cut(s)	168, 233
Fnu4HI	GCNGC	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	172, 237
HinfI	GANTC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	19, 177
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 224
HpyF3I	CTNAG	3 cut(s)	6, 67, 158
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	172, 237
Kzo9I	GATC	5 cut(s)	130, 172, 247, 267, 316
LmnI	GCTCC	2 cut(s)	58, 162
LpnPI	CCDG	4 cut(s)	41, 244, 307, 321
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	5 cut(s)	132, 174, 249, 269, 318
MboI	GATC	5 cut(s)	130, 172, 247, 267, 316
MboII	GAAGA	2 cut(s)	197, 254
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	7 cut(s)	70, 116, 134, 158, 196, 204, 261
MseI	TTAA	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	11, 224
NdeII	GATC	5 cut(s)	130, 172, 247, 267, 316
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	172, 237
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	156
Ple19I	CGATCG	2 cut(s)	270, 319
Psp124BI	GAGCTC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	305
PspXI	VCTCGAGB	1 cut(s)	149
PvuI	CGATCG	2 cut(s)	270, 319
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	5 cut(s)	130, 172, 247, 267, 316
Sau96I	GGNCC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	7 cut(s)	12, 16, 63, 145, 159, 167, 327
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	113
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	4 cut(s)	150, 266, 270, 315
TasI	AATT	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.