Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

11343704 .. 11344378

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1121700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACACTGATCAACTGCTTGGACTCAACAAACTAACATCTACGTATGAGGAACTCAAACCAGGTAGGGAAGTTGTTATTCCCATAACTTGTTCTTGCTCAGATCAATATTTTCAGGCAAATTTCAGCTACACAATTTTGCAAAGCACGTCATACTCCGAGGTAGCTTGTGGGGCTTTCGAAGGCTTGCTTGAGTCCTTTACACTTAAGGAGGAGAATATGTCCCAAGAAAACAAGCTTATGGTTGGCACCGAGCTTCATGTGCCTCTAAGATGTGCTTCTCCAGAGAAGTTAGCTAACATTAGTGGTGTGAAGTACCTTGTAACTTACCCTTTCGTAGAAGGCGATGGGCCAGTTACCTTGAGCCAGAAGTTTAGTATCTCTACTGAAGATTTATTGTCAGTGAATCACTTAGCGCCGAGCGAAACTGTGTTTCCAAATACAATTGTTTTAGTTCCTTTGAGAGCAGAACCGCACTTGAACTTCAACATCCAATATTCTCCACCTTTAGCTCCTGCTTTTCTTCCCACAATTTCTGTGGAAAATTTGAATAGTATCAAACTAAACATGGTAAATACCAATATTAAACTAAACATGGTAAATACCAAAAATATATATGACAATATTTGGGAATTTCTTATATATTCATTAATCTCCAAAGTGGAGTATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.07

Weight (kDa)

4.74

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	2 - 33	2.8e-06	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	37 - 91	3.4e-19	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	106 - 154	7.2e-08	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	668
AciI	CCGC	1 cut(s)	473
AcsI	RAATTY	3 cut(s)	121, 544, 632
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	1 cut(s)	317
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	481, 487, 550
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	6 cut(s)	129, 167, 238, 256, 296, 512
AluI	AGCT	6 cut(s)	129, 167, 238, 256, 296, 512
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	121, 544, 632
AseI	ATTAAT	1 cut(s)	650
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	248
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	419
BfrI	CTTAAG	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	212, 382
BsaAI	YACGTR	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse1I	ACTGG	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	10, 103
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	250
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	10, 103
BssNAI	GTATAC	1 cut(s)	669
Bst1107I	GTATAC	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	3 cut(s)	100, 269, 412
BstF5I	GGATG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	13, 106
BstMBI	GATC	2 cut(s)	10, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 262
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstSNI	TACGTA	1 cut(s)	45
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	6, 408
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	350
CsiI	ACCWGGT	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	316
CspCI	CAANNNNNGTGG	2 cut(s)	519, 554
CviAII	CATG	3 cut(s)	260, 568, 595
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	100, 269, 412
DpnI	GATC	2 cut(s)	12, 105
DpnII	GATC	2 cut(s)	10, 103
Eco105I	TACGTA	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	263, 571, 598
FalI	AAGNNNNNCTT	4 cut(s)	174, 206, 262, 294
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	3 cut(s)	259, 567, 594
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	668
FokI	GGATG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	263, 571, 598
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	24, 194, 406
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	2 cut(s)	103, 160
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	2 cut(s)	176, 335
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	2 cut(s)	44, 149
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 262
HpyF3I	CTNAG	3 cut(s)	100, 269, 412
HpySE526I	ACGT	2 cut(s)	44, 149
Hsp92II	CATG	3 cut(s)	263, 571, 598
HspAI	GCGC	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	10, 103
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	7 cut(s)	48, 75, 101, 297, 366, 380, 528
MabI	ACCWGGT	1 cut(s)	61
MaeII	ACGT	2 cut(s)	44, 149
MaeIII	GTNAC	2 cut(s)	322, 355
MalI	GATC	2 cut(s)	12, 105
MboI	GATC	2 cut(s)	10, 103
MboII	GAAGA	2 cut(s)	401, 515
MfeI	CAATTG	1 cut(s)	444
MluCI	AATT	6 cut(s)	121, 135, 444, 531, 544, 632
MlyI	GAGTC	2 cut(s)	18, 203
MnlI	CCTC	4 cut(s)	43, 154, 205, 276
MseI	TTAA	3 cut(s)	207, 585, 650
MspCI	CTTAAG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	173, 262
NdeII	GATC	2 cut(s)	10, 103
NlaIII	CATG	3 cut(s)	263, 571, 598
NlaIV	GGNNCC	1 cut(s)	250
NmeAIII	GCCGAG	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	406
PleI	GAGTC	2 cut(s)	18, 202
PpsI	GAGTC	2 cut(s)	18, 202
Ppu21I	YACGTR	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	650
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	207, 585, 650
Sau3AI	GATC	2 cut(s)	10, 103
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	18, 203
ScrFI	CCNGG	1 cut(s)	63
SexAI	ACCWGGT	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	3 cut(s)	191, 206, 361
SmoI	CTYRAG	3 cut(s)	191, 206, 361
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	6 cut(s)	121, 135, 444, 531, 544, 632
SsiI	CCGC	1 cut(s)	473
SspI	AATATT	4 cut(s)	110, 497, 583, 625
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	2 cut(s)	47, 152
TaqI	TCGA	1 cut(s)	180
TasI	AATT	6 cut(s)	121, 135, 444, 531, 544, 632
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	207, 585, 650
Tru9I	TTAA	3 cut(s)	207, 585, 650
TscAI	CASTG	2 cut(s)	13, 408
TspDTI	ATGAA	2 cut(s)	248, 636
TspRI	CASTG	2 cut(s)	13, 408
Vha464I	CTTAAG	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	650
XapI	RAATTY	3 cut(s)	121, 544, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.