Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

59745205 .. 59749934

Gene Structure 4730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTCCAGAATTCATGCAGCACCAATGTGGTATACAGAGCCAACCAACATTTCCAGACTATTGCAAATATCTCAGACTTGTTTCACATGGACTCTGATGCAATGCTTAGACTCAACAATCTTACATCTCCTTCTGATGTGCTCAAACCAGCTTGCGGAGTTTTTGAAGGCCTACTCAAGTCCTCTACACTTACCGAGGAAAACTCGGTTCAAGTCATCAACGTTGGTGCTGAGCTTCGTGTGCCTCTAAGATGTGCTTGTCCAGATAACTTGGCTAGAAAGAAAGGAGTGAAGTATCTTGTGGCATACCCTTTCATCGAAAGAGATGTACCAATCCTGTTGAGTAAGAGGTTCGGCATCTCTCCAGAAGATTTATGGTTAATCAATAATTTAGCGCCACCAAATCCAACTGTATTTCCAAACACAACACTTTTAGTTCCCTTAAGAGAACCTCCAGTTCTGAACTTCAATATTCCAGATTCTCCACCCCCAGCTCCTGGTTTTCTTCCCATAATTTCTGTCCTGTCCAGCATAGAAGAGATCAAGAAAGCAACAAGGGATTTCAATGAAGAGAACAAGATTGGTGCTCTAGTCTATAGAGGGGTGATAAACAATGCTGAAGTGATGATGAAGCAGATGACATTTGTCGAAACTAGCCATGTTATAGATGTCCATTCCAAAATCAACCACATCAATATCGTGAACTTGGAGGAAAATTGGAGGGCCAAACTTGCAAATATCGGAACTCTTTCTGCATTGGGATCTTCCGAAAACAAAGGATGGGTTGCACCGGAGTACCTTCTATACGGCTCAGCTTCTGAAAAAGTGGATATTTTTGCTTTTGGGGTCGTTTTGCTGGAGCTCATCTCAGCCAGAGAGGACATCAACGGGAAGTTATTTAAGGAATCCATCAAATTTTTAGGAGGGGGGGATAGTGAAGGAGGTTTCCTCGAGCAGCTAAGGAGCTTCATGGATCAGAAGTTAGAAGATTACCCTCTTACAGAGGCTCTGTGTTTGGCTGTTTTAGCCAAGGCATGTGTGGAAGATGATCCTCTCCACAGGCCATTGATCGATGATATCATTAAAGTCCTTGCCAGAATGGTAGGACCAGATCGAAGTCGATCGTCACGTTTGGTAGAATATTTGTCCATCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

386

Amino Acids

42.73

Weight (kDa)

5.33

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	5 - 50	1.4e-10	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	51 - 84	1.2e-06	LYK3/4/5 LysM2 domain
PK_Tyr_Ser-Thr	PF07714	242 - 306	4e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	156
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	3 cut(s)	769, 981, 1043
AcsI	RAATTY	2 cut(s)	10, 914
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	2 cut(s)	330, 797
AfiI	CCNNNNNNNGG	2 cut(s)	155, 497
AflII	CTTAAG	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	167, 212, 469, 565
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	7 cut(s)	152, 235, 494, 815, 862, 958, 966
AluI	AGCT	7 cut(s)	152, 235, 494, 815, 862, 958, 966
Alw21I	GWGCWC	3 cut(s)	144, 589, 864
AlwI	GGATC	3 cut(s)	769, 981, 1043
AlwNI	CAGNNNCTG	2 cut(s)	497, 818
Ama87I	CYCGRG	1 cut(s)	950
AoxI	GGCC	3 cut(s)	169, 723, 1061
ApeKI	GCWGC	2 cut(s)	18, 955
ApoI	RAATTY	2 cut(s)	10, 914
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	723, 1106
AsuHPI	GGTGA	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	1106
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	3 cut(s)	144, 589, 864
BbvI	GCAGC	2 cut(s)	30, 967
BccI	CCATC	3 cut(s)	774, 917, 1157
BceAI	ACGGC	1 cut(s)	823
BciT130I	CCWGG	1 cut(s)	498
BfaI	CTAG	3 cut(s)	276, 590, 654
BfmI	CTRYAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	398
BfrI	CTTAAG	1 cut(s)	442
BisI	GCNGC	2 cut(s)	19, 956
BlpI	GCTNAGC	2 cut(s)	231, 811
BlsI	GCNGC	2 cut(s)	20, 957
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	1106
BmeT110I	CYCGRG	1 cut(s)	950
BmgT120I	GGNCC	2 cut(s)	723, 1106
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	88, 366
BoxI	GACNNNNGTC	1 cut(s)	644
BplI	GAGNNNNNCTC	6 cut(s)	188, 220, 851, 883, 933, 965
BpmI	CTGGAG	3 cut(s)	348, 438, 878
Bpu10I	CCTNAGC	1 cut(s)	959
Bpu1102I	GCTNAGC	2 cut(s)	231, 811
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	1071
BsaJI	CCNNGG	2 cut(s)	195, 1029
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 497
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	498
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	195, 1029
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	2 cut(s)	155, 497
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	4 cut(s)	87, 222, 825, 882
BseNI	ACTGG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	30, 967
BseYI	CCCAGC	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	1124
BshFI	GGCC	3 cut(s)	171, 725, 1063
BshVI	ATCGAT	1 cut(s)	1071
BsiEI	CGRYCG	1 cut(s)	1124
BsiHKAI	GWGCWC	3 cut(s)	144, 589, 864
BsiHKCI	CYCGRG	1 cut(s)	950
BsiSI	CCGG	1 cut(s)	791
BslI	CCNNNNNNNGG	2 cut(s)	155, 497
BsnI	GGCC	3 cut(s)	171, 725, 1063
BsoBI	CYCGRG	1 cut(s)	950
Bsp1286I	GDGCHC	3 cut(s)	144, 589, 864
Bsp143I	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
Bsp1720I	GCTNAGC	2 cut(s)	231, 811
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	3 cut(s)	171, 725, 1063
BspCNI	CTCAG	4 cut(s)	86, 223, 824, 881
BspDI	ATCGAT	1 cut(s)	1071
BspPI	GGATC	3 cut(s)	769, 981, 1043
BspTI	CTTAAG	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	195, 1029
BssMI	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
BssNAI	GTATAC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	1029
Bst1107I	GTATAC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	2 cut(s)	531, 564
BstAFI	CTTAAG	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	7 cut(s)	73, 107, 231, 248, 811, 868, 959
BstF5I	GGATG	1 cut(s)	785
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	7 cut(s)	543, 764, 976, 1051, 1071, 1114, 1124
BstMBI	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
BstMCI	CGRYCG	1 cut(s)	1124
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 731, 1025
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	1038
BstPAI	GACNNNNGTC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	30, 967
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
BstZ17I	GTATAC	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	3 cut(s)	171, 725, 1063
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	1 cut(s)	785
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	2 cut(s)	497, 818
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	723, 1106
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	2 cut(s)	329, 796
CviAII	CATG	5 cut(s)	15, 88, 659, 970, 1035
CviQI	GTAC	2 cut(s)	329, 796
DdeI	CTNAG	7 cut(s)	73, 107, 231, 248, 811, 868, 959
DpnI	GATC	7 cut(s)	542, 763, 975, 1050, 1070, 1113, 1123
DpnII	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
Eam1104I	CTCTTC	2 cut(s)	531, 564
EarI	CTCTTC	2 cut(s)	531, 564
Ecl136II	GAGCTC	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	1029
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	1078
Eco47I	GGWCC	1 cut(s)	1106
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	496
EcoRV	GATATC	1 cut(s)	1078
EcoT14I	CCWWGG	1 cut(s)	1029
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	1029
FaeI	CATG	5 cut(s)	18, 91, 662, 973, 1038
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FatI	CATG	5 cut(s)	14, 87, 658, 969, 1034
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	19, 956
FokI	GGATG	1 cut(s)	792
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	2 cut(s)	19, 956
FspBI	CTAG	3 cut(s)	276, 590, 654
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	19, 956
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	3 cut(s)	348, 438, 878
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	171, 725, 1063
HapII	CCGG	1 cut(s)	791
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	18, 91, 662, 973, 1038
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	4 cut(s)	92, 111, 479, 905
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	2 cut(s)	34, 703
Hpy188I	TCNGA	8 cut(s)	76, 97, 136, 462, 743, 769, 820, 978
Hpy188III	TCNNGA	7 cut(s)	7, 55, 263, 365, 476, 544, 700
Hpy8I	GTNNAC	2 cut(s)	34, 703
HpyAV	CCTTC	4 cut(s)	141, 161, 809, 932
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	222, 1129
HpyCH4V	TGCA	6 cut(s)	18, 65, 101, 734, 755, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 731, 1025
HpyF3I	CTNAG	7 cut(s)	73, 107, 231, 248, 811, 868, 959
HpySE526I	ACGT	2 cut(s)	222, 1129
Hsp92II	CATG	5 cut(s)	18, 91, 662, 973, 1038
HspAI	GCGC	1 cut(s)	395
Kzo9I	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
LmnI	GCTCC	3 cut(s)	499, 859, 963
Lsp1109I	GCAGC	2 cut(s)	30, 967
LweI	GCATC	2 cut(s)	88, 366
MaeI	CTAG	3 cut(s)	276, 590, 654
MaeII	ACGT	2 cut(s)	222, 1129
MaeIII	GTNAC	1 cut(s)	1125
MalI	GATC	7 cut(s)	542, 763, 975, 1050, 1070, 1113, 1123
MboI	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
MboII	GAAGA	7 cut(s)	380, 497, 548, 581, 756, 998, 1055
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	3 cut(s)	144, 589, 864
MluCI	AATT	5 cut(s)	10, 388, 513, 715, 914
MlyI	GAGTC	2 cut(s)	86, 105
MmeI	TCCRAC	1 cut(s)	431
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	4 cut(s)	380, 443, 900, 1083
MslI	CAYNNNNRTG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	442
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	241, 731, 1025
NdeII	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
NlaIII	CATG	5 cut(s)	18, 91, 662, 973, 1038
NmuCI	GTSAC	1 cut(s)	1125
NspI	RCATGY	1 cut(s)	1038
OliI	CACNNNNGTG	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	950
PceI	AGGCCT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	1126
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	479, 905
PflMI	CCANNNNNTGG	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	20, 957
Ple19I	CGATCG	1 cut(s)	1124
PleI	GAGTC	2 cut(s)	86, 105
PpsI	GAGTC	2 cut(s)	86, 105
PshAI	GACNNNNGTC	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	723, 1106
PspXI	VCTCGAGB	1 cut(s)	950
PstNI	CAGNNNCTG	2 cut(s)	497, 818
PsuI	RGATCY	1 cut(s)	761
PvuI	CGATCG	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	330, 797
RsaNI	GTAC	2 cut(s)	329, 796
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	864
SaqAI	TTAA	4 cut(s)	380, 443, 900, 1083
SatI	GCNGC	2 cut(s)	19, 956
Sau3AI	GATC	7 cut(s)	540, 761, 973, 1048, 1068, 1111, 1121
Sau96I	GGNCC	2 cut(s)	723, 1106
SchI	GAGTC	2 cut(s)	86, 105
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	3 cut(s)	144, 589, 864
SfaNI	GCATC	2 cut(s)	88, 366
SfcI	CTRYAG	1 cut(s)	595
Sfr274I	CTCGAG	1 cut(s)	950
SinI	GGWCC	1 cut(s)	1106
SlaI	CTCGAG	1 cut(s)	950
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	3 cut(s)	176, 442, 950
SmoI	CTYRAG	3 cut(s)	176, 442, 950
Sse9I	AATT	5 cut(s)	10, 388, 513, 715, 914
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	2 cut(s)	472, 1142
SspMI	CTAG	3 cut(s)	276, 590, 654
SstI	GAGCTC	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	225, 1132
TaqI	TCGA	6 cut(s)	318, 648, 951, 1071, 1114, 1120
TasI	AATT	5 cut(s)	10, 388, 513, 715, 914
TfiI	GAWTC	2 cut(s)	479, 905
Tru1I	TTAA	4 cut(s)	380, 443, 900, 1083
Tru9I	TTAA	4 cut(s)	380, 443, 900, 1083
TseFI	GTSAC	1 cut(s)	1125
TseI	GCWGC	2 cut(s)	18, 955
Tsp45I	GTSAC	1 cut(s)	1125
TspDTI	ATGAA	4 cut(s)	304, 582, 644, 958
Van91I	CCANNNNNTGG	1 cut(s)	497
Vha464I	CTTAAG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	1106
XapI	RAATTY	2 cut(s)	10, 914
XceI	RCATGY	1 cut(s)	1038
XcmI	CCANNNNNNNNNTGG	2 cut(s)	372, 1036
XhoI	CTCGAG	1 cut(s)	950
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	3 cut(s)	276, 590, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.