Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

59505182 .. 59506093

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCGACATGTTTATCTCCGGATATTCTTGCTGGATTAAAGTACTCTTTGTTCAACTACAGCATAGAAGAGATCAGGAAAGCAACAAGGGATTTCAACGAAGAGAACAAGACTGGTGCTCTAGTCTATATAGTCTATAGAGGGGTGATAAACAATGCTGAAGTGATGATGAAGCAGATGACATTTGTCGAAACTAGCCATGTTATAGATATCCATTCCAAAATCAACCACATCAATATCTTGAACTTGGAGGGTGTTTCTTATGGAGAAAGTGACTTGTCCTGGTCATATCTAGTGTTTGAGCTTCCCAGCAATGGCTGCTTGAGGGACTGCTTGTCTCATACATCTAATCCTCTTGAGTGGTCTGGACGAACACAAATAGCTTTTGATATTGCCAGTTTGCCACAGGACTTCACTATTTGCACTGCTAAAATTGGAGGGCCAAACTTGCAAATATCGGAACTCTTTCTGCATTGGGATCTTCCGAAAACAAAGGATGGGTTGCACCGGAGTACCTTCTATACGGCTCAGCTAGCTTCTGAAAAAGTGGATATTTTTGCTTTTGGGGTCGTTTTGCTGGAGCTTATCTCAGCCAGACAGGACATCAAAGGGAAGTTATTTGAGGAATCCATCAAATTTTTAGGAGGGGGAGATCGTGAAGGAGGTTTCCTCGAGCAGCTAAGGAGCTTCATGGATCAGAAGTTAGAAGATTACCCTCTTGCAGAGGCTCTGTGTTTGGCTGTTTTAGCCAAGGCATGTGTGGAAGATGATTCTCTCCACAGGCCATCGATCGATGATATCATTAAAGTCCTTGCCAGAATGGTAGGACCAGAAGTCGATCGTCACGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

284

Amino Acids

31.95

Weight (kDa)

5.06

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	2 cut(s)	486, 702
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	44, 514
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	55, 97, 244
AhdI	GACNNNNNGTC	2 cut(s)	334, 833
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	7 cut(s)	304, 383, 532, 536, 583, 679, 687
AluI	AGCT	7 cut(s)	304, 383, 532, 536, 583, 679, 687
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	486, 702
Ama87I	CYCGRG	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	2 cut(s)	440, 782
ApeKI	GCWGC	2 cut(s)	318, 676
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	440, 827
AsuHPI	GGTGA	1 cut(s)	157
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	827
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	305, 688
BccI	CCATC	3 cut(s)	491, 638, 793
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	4 cut(s)	122, 195, 293, 533
BfmI	CTRYAG	2 cut(s)	58, 136
BisI	GCNGC	2 cut(s)	319, 677
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	2 cut(s)	320, 678
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	827
BmeRI	GACNNNNNGTC	2 cut(s)	334, 833
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	2 cut(s)	440, 827
BmrFI	CCNGG	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	536
BoxI	GACNNNNGTC	1 cut(s)	185
BplI	GAGNNNNNCTC	4 cut(s)	572, 604, 654, 686
BpmI	CTGGAG	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	680
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	343, 377
Bsa29I	ATCGAT	2 cut(s)	788, 792
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	2 cut(s)	19, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	118, 396
Bse3DI	GCAATG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	283
BseCI	ATCGAT	2 cut(s)	788, 792
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	542, 603
BseNI	ACTGG	2 cut(s)	118, 396
BseXI	GCAGC	2 cut(s)	305, 688
BseYI	CCCAGC	1 cut(s)	308
Bsh1285I	CGRYCG	2 cut(s)	792, 841
BshFI	GGCC	2 cut(s)	442, 784
BshVI	ATCGAT	2 cut(s)	788, 792
BsiEI	CGRYCG	2 cut(s)	792, 841
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	20, 508
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	2 cut(s)	442, 784
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
Bsp1720I	GCTNAGC	1 cut(s)	528
BspANI	GGCC	2 cut(s)	442, 784
BspCNI	CTCAG	2 cut(s)	541, 602
BspDI	ATCGAT	2 cut(s)	788, 792
BspEI	TCCGGA	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	486, 702
BsrDI	GCAATG	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	118, 396
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	63, 96
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	528, 589, 680
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	6 cut(s)	75, 481, 655, 697, 792, 841
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
BstMCI	CGRYCG	2 cut(s)	792, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 448, 533, 746
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	2 cut(s)	12, 759
BstPAI	GACNNNNGTC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	2 cut(s)	58, 136
BstV1I	GCAGC	2 cut(s)	305, 688
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Bsu15I	ATCGAT	2 cut(s)	788, 792
BsuRI	GGCC	2 cut(s)	442, 784
BsuTUI	ATCGAT	2 cut(s)	788, 792
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	440, 827
ClaI	ATCGAT	2 cut(s)	788, 792
Csp6I	GTAC	2 cut(s)	43, 513
CviAII	CATG	4 cut(s)	9, 200, 691, 756
CviQI	GTAC	2 cut(s)	43, 513
DdeI	CTNAG	3 cut(s)	528, 589, 680
DpnI	GATC	6 cut(s)	74, 480, 654, 696, 791, 840
DpnII	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
DriI	GACNNNNNGTC	2 cut(s)	334, 833
Eam1104I	CTCTTC	2 cut(s)	63, 96
Eam1105I	GACNNNNNGTC	2 cut(s)	334, 833
EarI	CTCTTC	2 cut(s)	63, 96
Eco130I	CCWWGG	1 cut(s)	750
Eco32I	GATATC	2 cut(s)	211, 799
Eco47I	GGWCC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	281
EcoRV	GATATC	2 cut(s)	211, 799
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	4 cut(s)	12, 203, 694, 759
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	8, 199, 690, 755
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	319, 677
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	2 cut(s)	319, 677
FspBI	CTAG	4 cut(s)	122, 195, 293, 533
GluI	GCNGC	2 cut(s)	319, 677
GsaI	CCCAGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	442, 784
HapII	CCGG	2 cut(s)	20, 508
Hin1II	CATG	4 cut(s)	12, 203, 694, 759
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	626, 770
HpaII	CCGG	2 cut(s)	20, 508
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	460, 486, 541, 699
Hpy188III	TCNNGA	6 cut(s)	20, 76, 241, 356, 366, 656
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	526, 653
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	5 cut(s)	423, 451, 472, 505, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 448, 533, 746
HpyF3I	CTNAG	3 cut(s)	528, 589, 680
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	4 cut(s)	12, 203, 694, 759
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
LmnI	GCTCC	2 cut(s)	580, 684
Lsp1109I	GCAGC	2 cut(s)	305, 688
MaeI	CTAG	4 cut(s)	122, 195, 293, 533
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	2 cut(s)	272, 842
MalI	GATC	6 cut(s)	74, 480, 654, 696, 791, 840
MboI	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
MboII	GAAGA	5 cut(s)	80, 113, 473, 719, 776
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	2 cut(s)	432, 635
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	38, 804
MspI	CCGG	2 cut(s)	20, 508
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	318, 448, 533, 746
NdeII	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	12, 203, 694, 759
NmuCI	GTSAC	2 cut(s)	272, 842
NspI	RCATGY	2 cut(s)	12, 759
PaeR7I	CTCGAG	1 cut(s)	671
PciI	ACATGT	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	626, 770
PkrI	GCNGC	2 cut(s)	320, 678
Ple19I	CGATCG	2 cut(s)	792, 841
PscI	ACATGT	1 cut(s)	8
PshAI	GACNNNNGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	440, 827
PspXI	VCTCGAGB	1 cut(s)	671
PsrI	GAACNNNNNNTAC	2 cut(s)	35, 67
PsuI	RGATCY	1 cut(s)	478
PvuI	CGATCG	2 cut(s)	792, 841
RsaI	GTAC	2 cut(s)	44, 514
RsaNI	GTAC	2 cut(s)	43, 513
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	38, 804
SatI	GCNGC	2 cut(s)	319, 677
Sau3AI	GATC	6 cut(s)	72, 478, 652, 694, 789, 838
Sau96I	GGNCC	2 cut(s)	440, 827
ScaI	AGTACT	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	121
SfcI	CTRYAG	2 cut(s)	58, 136
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	827
SlaI	CTCGAG	1 cut(s)	671
SmlI	CTYRAG	3 cut(s)	322, 356, 671
SmoI	CTYRAG	3 cut(s)	322, 356, 671
Sse9I	AATT	2 cut(s)	432, 635
SspMI	CTAG	4 cut(s)	122, 195, 293, 533
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	750
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	6 cut(s)	5, 189, 672, 788, 792, 837
TasI	AATT	2 cut(s)	432, 635
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	626, 770
Tru1I	TTAA	2 cut(s)	38, 804
Tru9I	TTAA	2 cut(s)	38, 804
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	272, 842
TseI	GCWGC	2 cut(s)	318, 676
Tsp45I	GTSAC	2 cut(s)	272, 842
TspDTI	ATGAA	2 cut(s)	185, 679
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	2 cut(s)	12, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	4 cut(s)	122, 195, 293, 533
ZrmI	AGTACT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.