Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Forward (+)

16468180 .. 16475760

Gene Structure 7581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1061100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2307 bp

ATGACTCCGAGTTTCGTATTTGAACCCCCAAGCGATGAAGAATATTCCGATGAAGAGCAAGGTGTTGGCGATGGCAATTTTCAATCCTCATGGGACTTCGCATCTTACTCTGAAATAGTCTCCCAAGAACATGCCCATGGAAGCACCACCTCTGTCAATTTCAAAATTAAGAAAGCTTTGCAGCAGCAACCAATCTCACACCATAAAACTGCTGACGAAGACAACGAATCCAACAAACAAGAAGATTGTAATCAGCTAGATTCCGGTGATGAAGAAGACCAGGAGGAAGCTTTTAATGATGACGATGCTCTAGGAGATGGCAATACTAATAGTAAGCCATTGATTCGGATTTGCGATAAGTTGGACCATGCGAAGCCCACTCCAATTCAGACTGAAGACAAAGACAATGAGGAAGGCGATGATGCTCCTCCTAATGCTGCCGATGACAATAATAAGCCCTTTTTTGCCCCATCAGAGGGAGTTTCGTTTCATGCAAATTCATTTATGGAGTTGAACTTGTCTCGCCCTTTGCTTCGCGCTTTAGAGAAATTGGGCCATACCAAACCCACTCCAATTCAGGCAGCATGCATACCAGTGGCCCTTGCTGGTCGTGACATATGTGGGAGTGCCATTACTGGTTCCGGGAAGACGGGTGCTTTTGCGTTACCAACTTTGGAGAGACTGTTGTATCGCCCCAAGCGGCTGCCAGCTATAAGGGTCCTTGTTTTGACTCCGACAAGGGAACTCGGGGTTCAGGTTCTGAGTATGATTGAGAAACTTGCTCAGTTCATGGATATCAGATGTTGCCAGGCTATTGGAGGGCTTCCAATGAAGGAACAAGAGATAGCCTTGAGATCAAAGCCAGATATTGTTGTAGCTACTCCAGGACGCATTATAGATCATTTACACAATTCTATGTCTGTGGATTTGGAAGATCTTGCTGTTCTAATTCTTGACGAGGCTGATCGACTTTTAGAGATTGGGTTTAGTGCTGAAATTCGCGAGCTGATTCGTCTATGCCCCAAAAGGAGACAGACCATGCTTTTTTCAGCTACGATGACTACTGAAGTTGATGAACTTGTCAAGCTTTCTCTTACCAAACCACTACGTCTCTCAGCCGACCCATCTGCTAAACGGCCAGTGGCACTAACGGAGGAGGTGGTCAGGATACGACGAATGCGTGAAGTAAATAAGGAAGCAGTTCTACTTGCACTGTGTTCGAAGACATTCACTTCTAGAGTGATCATTTTCAGTGGCACAAAAGTAGCTGCGCATAGGTTGACGATATTATTTGGGTTAGCTGGCTTAAAAGCTGCTGAGTTTCATGCAAACCTTTCTCAACCGCAGCGCCTACATGCTTTGGAACTCTTTCGGAAGAAGGAAGTTGATTTTTTGATTTCAACTGAATTGATTGCCCGTGGCATTGACATAGATGGTGTTCTGACTGTTATCAACTATGACTGTCCTACAAATCTTTCAAGCTATGTTCATCGAGTGGGACGTACAGCAAGGGCTGGCAGAGATGGATATGCTGTAACTTTTGTGACAGATAATGACCGGCCTCTTTTAAAATCCATTGAAAAAAGGGTTGGTTCCAAACTGAAGAGTCCAATTGTTGCTGAACAATCAATTACCAAGTGGTCCCGGGTTATTGAGGAAATGGAAGATCAAGTGGCTGCAATTCTTCTAGAGGAAAGGGAAGAACAAGCACTAAGAGATGCTGAAAGGGAAGTAACAAAGGCAGAGAATATGATATTACACAAAGATGAAATTTTTTCACGCCCGAAGAAGTCCTGGTTTCAGTCAGAAAATGATAAGAAGAAGGTAGTGCACGCAGCGAAGGCATCGCTTGGAAGAGAAAAGCGTTGTGGAAATGATGTAATCAGTGCTCAGCAAGCCGAAGACATAAAAATGAAAGAAAAGAGGAAGCGGGAGCGTGAGAAAAATTTGCCTCGCAAGATACGCCGGAAATTGGAAGCAGCTAGAGAAATGTTAGAGGATGAAAATCAGCTCAAAGGCAGTGAGAAGTTTAAAGAGAAGACAGGAATGCCACTTGTTGACCTTGCTTACAGACGGGCAAAAGCCATGAAGGCTGCACAAAAAACAACAGATGCTGGCAAGACTTTGAAGAAGTCTAGCAAGAGATGTAATCTTCCTCCGCAAAGAACTCAGTCTAGGACAGATGAAATGCGGGACCTGTTCCACAGTGACATAACTGAAAGGAAGCATAACAGAAAGCTTGGTGGAGCGGGAATGAAAAAGTCCAAGAGTTCCTTCAAGAGCAATTCAAGGTGCAAACGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

769

Amino Acids

86.25

Weight (kDa)

8.59

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	190 - 359	2.9e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	398 - 506	1e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1272
AccBSI	CCGCTC	1 cut(s)	2249
AccII	CGCG	2 cut(s)	537, 1002
AciI	CCGC	6 cut(s)	700, 1343, 1930, 2159, 2191, 2249
AcoI	YGGCCR	1 cut(s)	1136
AcsI	RAATTY	4 cut(s)	496, 996, 1770, 1945
AcuI	CTGAAG	3 cut(s)	414, 1086, 1622
AfaI	GTAC	1 cut(s)	1504
AfiI	CCNNNNNNNGG	3 cut(s)	475, 476, 1972
AjnI	CCWGG	4 cut(s)	279, 807, 883, 1793
AjuI	GAANNNNNNNTTGG	4 cut(s)	1572, 1604, 2258, 2290
Alw21I	GWGCWC	2 cut(s)	1833, 1891
Alw26I	GTCTC	5 cut(s)	124, 525, 673, 1024, 1115
Alw44I	GTGCAC	1 cut(s)	1829
AlwNI	CAGNNNCTG	2 cut(s)	760, 2114
Ama87I	CYCGRG	2 cut(s)	746, 1644
AoxI	GGCC	4 cut(s)	553, 597, 1136, 1559
ApaLI	GTGCAC	1 cut(s)	1829
ApoI	RAATTY	4 cut(s)	496, 996, 1770, 1945
Asp700I	GAANNNNTTC	3 cut(s)	1200, 1226, 1368
AspLEI	GCGC	3 cut(s)	539, 1273, 1350
AspS9I	GGNCC	6 cut(s)	364, 553, 598, 718, 1641, 2194
AsuC2I	CCSGG	3 cut(s)	643, 1645, 1646
AsuHPI	GGTGA	1 cut(s)	278
AsuII	TTCGAA	1 cut(s)	1220
AvaI	CYCGRG	2 cut(s)	746, 1644
AvaII	GGWCC	4 cut(s)	364, 718, 1641, 2194
BaeGI	GKGCMC	1 cut(s)	1833
BaeI	ACNNNNGTAYC	2 cut(s)	671, 704
BarI	GAAGNNNNNNTAC	2 cut(s)	1188, 1220
BbsI	GAAGAC	7 cut(s)	225, 282, 402, 653, 1229, 1908, 2045
Bbv12I	GWGCWC	2 cut(s)	1833, 1891
BccI	CCATC	6 cut(s)	65, 311, 478, 1132, 1427, 1517
BceAI	ACGGC	1 cut(s)	1151
BcgI	CGANNNNNNTGC	4 cut(s)	1109, 1143, 1200, 1234
BciT130I	CCWGG	4 cut(s)	281, 809, 885, 1795
BciVI	GTATCC	1 cut(s)	1161
BclI	TGATCA	1 cut(s)	1242
BcnI	CCSGG	3 cut(s)	643, 1645, 1646
BcoDI	GTCTC	5 cut(s)	124, 525, 673, 1024, 1115
BfaI	CTAG	7 cut(s)	257, 311, 1236, 1688, 1983, 2136, 2175
BfoI	RGCGCY	1 cut(s)	1351
BfuI	GTATCC	1 cut(s)	1161
BglI	GCCNNNNNGGC	1 cut(s)	2090
BglII	AGATCT	1 cut(s)	934
BlpI	GCTNAGC	1 cut(s)	1890
Bme1390I	CCNGG	7 cut(s)	281, 643, 809, 885, 1645, 1646, 1795
Bme18I	GGWCC	4 cut(s)	364, 718, 1641, 2194
BmeT110I	CYCGRG	2 cut(s)	746, 1644
BmgT120I	GGNCC	6 cut(s)	364, 553, 598, 718, 1641, 2194
BmiI	GGNNCC	5 cut(s)	640, 719, 1594, 1643, 2195
BmrFI	CCNGG	7 cut(s)	281, 643, 809, 885, 1645, 1646, 1795
BmsI	GCATC	6 cut(s)	110, 295, 412, 1708, 1853, 2101
BpiI	GAAGAC	7 cut(s)	225, 282, 402, 653, 1229, 1908, 2045
BpmI	CTGGAG	1 cut(s)	867
Bpu1102I	GCTNAGC	1 cut(s)	1890
Bpu14I	TTCGAA	1 cut(s)	1220
BpuEI	CTTGAG	1 cut(s)	871
BpuMI	CCSGG	3 cut(s)	643, 1645, 1646
BsaBI	GATNNNNATC	2 cut(s)	249, 2004
BsaJI	CCNNGG	3 cut(s)	136, 1417, 1644
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 476, 1972
Bse118I	RCCGGY	1 cut(s)	1557
Bse1I	ACTGG	3 cut(s)	593, 640, 1139
Bse8I	GATNNNNATC	2 cut(s)	249, 2004
BseBI	CCWGG	4 cut(s)	281, 809, 885, 1795
BseDI	CCNNGG	3 cut(s)	136, 1417, 1644
BseGI	GGATG	1 cut(s)	2005
BseJI	GATNNNNATC	2 cut(s)	249, 2004
BseLI	CCNNNNNNNGG	3 cut(s)	475, 476, 1972
BseMII	CTCAG	6 cut(s)	752, 797, 1128, 1308, 1904, 2183
BseNI	ACTGG	3 cut(s)	593, 640, 1139
BseRI	GAGGAG	2 cut(s)	417, 1169
BseSI	GKGCMC	1 cut(s)	1833
BsgI	GTGCAG	1 cut(s)	2079
Bsh1236I	CGCG	2 cut(s)	537, 1002
BshFI	GGCC	4 cut(s)	555, 599, 1138, 1561
BsiHKAI	GWGCWC	2 cut(s)	1833, 1891
BsiHKCI	CYCGRG	2 cut(s)	746, 1644
BsiSI	CCGG	5 cut(s)	264, 642, 1558, 1645, 1966
BslFI	GGGAC	4 cut(s)	107, 1512, 1627, 2207
BslI	CCNNNNNNNGG	3 cut(s)	475, 476, 1972
BsmAI	GTCTC	5 cut(s)	124, 525, 673, 1024, 1115
BsmBI	CGTCTC	1 cut(s)	1115
BsmFI	GGGAC	4 cut(s)	107, 1512, 1627, 2207
BsmI	GAATGC	2 cut(s)	1182, 2052
BsnI	GGCC	4 cut(s)	555, 599, 1138, 1561
BsoBI	CYCGRG	2 cut(s)	746, 1644
Bsp119I	TTCGAA	1 cut(s)	1220
Bsp1286I	GDGCHC	2 cut(s)	1833, 1891
Bsp143I	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
Bsp1720I	GCTNAGC	1 cut(s)	1890
Bsp19I	CCATGG	1 cut(s)	136
Bsp68I	TCGCGA	1 cut(s)	1002
BspACI	CCGC	6 cut(s)	700, 1343, 1930, 2159, 2191, 2249
BspANI	GGCC	4 cut(s)	555, 599, 1138, 1561
BspCNI	CTCAG	6 cut(s)	753, 796, 1127, 1309, 1903, 2182
BspFNI	CGCG	2 cut(s)	537, 1002
BspLI	GGNNCC	5 cut(s)	640, 719, 1594, 1643, 2195
BspQI	GCTCTTC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	1220
BsrBI	CCGCTC	1 cut(s)	2249
BsrFI	RCCGGY	1 cut(s)	1557
BsrI	ACTGG	3 cut(s)	593, 640, 1139
BssAI	RCCGGY	1 cut(s)	1557
BssECI	CCNNGG	3 cut(s)	136, 1417, 1644
BssMI	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	4 cut(s)	281, 809, 885, 1795
Bst4CI	ACNGT	5 cut(s)	684, 1215, 1447, 1463, 2207
Bst6I	CTCTTC	3 cut(s)	48, 1598, 1849
BstBI	TTCGAA	1 cut(s)	1220
BstC8I	GCNNGC	8 cut(s)	586, 708, 1004, 1303, 1516, 1833, 1896, 2116
BstDEI	CTNAG	7 cut(s)	761, 783, 1114, 1317, 1712, 1890, 2169
BstDSI	CCRYGG	2 cut(s)	136, 1417
BstF5I	GGATG	1 cut(s)	2005
BstFNI	CGCG	2 cut(s)	537, 1002
BstH2I	RGCGCY	1 cut(s)	1351
BstHHI	GCGC	3 cut(s)	539, 1273, 1350
BstKTI	GATC	6 cut(s)	857, 901, 937, 967, 1245, 1669
BstMAI	GTCTC	5 cut(s)	124, 525, 673, 1024, 1115
BstMBI	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
BstMWI	GCNNNNNNNGC	4 cut(s)	1841, 1895, 1962, 2090
BstNI	CCWGG	4 cut(s)	281, 809, 885, 1795
BstNSI	RCATGY	3 cut(s)	134, 588, 1358
BstSCI	CCNGG	7 cut(s)	279, 641, 807, 883, 1643, 1644, 1793
BstSLI	GKGCMC	1 cut(s)	1833
BstUI	CGCG	2 cut(s)	537, 1002
BstV2I	GAAGAC	7 cut(s)	225, 282, 402, 653, 1229, 1908, 2045
BstX2I	RGATCY	1 cut(s)	934
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	934
BsuI	GTATCC	1 cut(s)	1161
BsuRI	GGCC	4 cut(s)	555, 599, 1138, 1561
BtgI	CCRYGG	2 cut(s)	136, 1417
BtgZI	GCGATG	4 cut(s)	48, 84, 432, 1830
BtsCI	GGATG	1 cut(s)	2005
BtsI	GCAGTG	1 cut(s)	2026
BtsIMutI	CAGTG	7 cut(s)	600, 1146, 1211, 1258, 1891, 2026, 2212
BtuMI	TCGCGA	1 cut(s)	1002
Cac8I	GCNNGC	8 cut(s)	586, 708, 1004, 1303, 1516, 1833, 1896, 2116
CaiI	CAGNNNCTG	2 cut(s)	760, 2114
CfoI	GCGC	3 cut(s)	539, 1273, 1350
Cfr10I	RCCGGY	1 cut(s)	1557
Cfr13I	GGNCC	6 cut(s)	364, 553, 598, 718, 1641, 2194
Cfr9I	CCCGGG	1 cut(s)	1644
CseI	GACGC	1 cut(s)	897
Csp6I	GTAC	1 cut(s)	1503
CviQI	GTAC	1 cut(s)	1503
DdeI	CTNAG	7 cut(s)	761, 783, 1114, 1317, 1712, 1890, 2169
DpnI	GATC	6 cut(s)	856, 900, 936, 966, 1244, 1668
DpnII	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
DraI	TTTAAA	2 cut(s)	1569, 2032
EaeI	YGGCCR	1 cut(s)	1136
Eam1104I	CTCTTC	3 cut(s)	48, 1598, 1849
EarI	CTCTTC	3 cut(s)	48, 1598, 1849
Eco130I	CCWWGG	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	4 cut(s)	364, 718, 1641, 2194
Eco57I	CTGAAG	3 cut(s)	414, 1086, 1622
Eco88I	CYCGRG	2 cut(s)	746, 1644
EcoO109I	RGGNCCY	2 cut(s)	718, 2194
EcoRII	CCWGG	4 cut(s)	279, 807, 883, 1793
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	1115
FalI	AAGNNNNNCTT	2 cut(s)	2258, 2290
FaqI	GGGAC	4 cut(s)	107, 1512, 1627, 2207
FauI	CCCGC	3 cut(s)	1923, 2184, 2242
FauNDI	CATATG	1 cut(s)	617
FbaI	TGATCA	1 cut(s)	1242
FokI	GGATG	1 cut(s)	2012
FspBI	CTAG	7 cut(s)	257, 311, 1236, 1688, 1983, 2136, 2175
FspI	TGCGCA	1 cut(s)	1272
GlaI	GCGC	3 cut(s)	538, 1272, 1349
GsuI	CTGGAG	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	1351
HaeIII	GGCC	4 cut(s)	555, 599, 1138, 1561
HapII	CCGG	5 cut(s)	264, 642, 1558, 1645, 1966
HgaI	GACGC	1 cut(s)	897
HhaI	GCGC	3 cut(s)	539, 1273, 1350
Hin6I	GCGC	3 cut(s)	537, 1271, 1348
HinP1I	GCGC	3 cut(s)	537, 1271, 1348
HincII	GTYRAC	2 cut(s)	1281, 2059
HindII	GTYRAC	2 cut(s)	1281, 2059
HindIII	AAGCTT	4 cut(s)	174, 288, 1085, 2237
HinfI	GANTC	7 cut(s)	4, 227, 260, 343, 730, 1009, 1606
HpaII	CCGG	5 cut(s)	264, 642, 1558, 1645, 1966
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	1281, 1831, 2059
Hpy188III	TCNNGA	7 cut(s)	611, 953, 1001, 1165, 1236, 1688, 2278
Hpy8I	GTNNAC	3 cut(s)	1281, 1831, 2059
Hpy99I	CGWCG	1 cut(s)	1176
HpyAV	CCTTC	7 cut(s)	407, 826, 1372, 1816, 1834, 2083, 2284
HpyCH4III	ACNGT	5 cut(s)	684, 1215, 1447, 1463, 2207
HpyCH4IV	ACGT	2 cut(s)	1108, 1501
HpyCH4V	TGCA	9 cut(s)	181, 494, 588, 1211, 1328, 1679, 1831, 2096, 2295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1841, 1895, 1962, 2090
HpyF3I	CTNAG	7 cut(s)	761, 783, 1114, 1317, 1712, 1890, 2169
HpySE526I	ACGT	2 cut(s)	1108, 1501
HspAI	GCGC	3 cut(s)	537, 1271, 1348
Ksp22I	TGATCA	1 cut(s)	1242
Kzo9I	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	3 cut(s)	430, 1933, 2246
LweI	GCATC	6 cut(s)	110, 295, 412, 1708, 1853, 2101
MaeI	CTAG	7 cut(s)	257, 311, 1236, 1688, 1983, 2136, 2175
MaeII	ACGT	2 cut(s)	1108, 1501
MaeIII	GTNAC	6 cut(s)	611, 663, 1534, 1543, 1732, 2207
MalI	GATC	6 cut(s)	856, 900, 936, 966, 1244, 1668
MbiI	CCGCTC	1 cut(s)	2249
MboI	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
MfeI	CAATTG	1 cut(s)	1611
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	2 cut(s)	1833, 1891
MlyI	GAGTC	2 cut(s)	724, 1615
MmeI	TCCRAC	3 cut(s)	255, 342, 758
Mph1103I	ATGCAT	1 cut(s)	590
MroXI	GAANNNNTTC	3 cut(s)	1200, 1226, 1368
MseI	TTAA	5 cut(s)	168, 294, 1307, 1568, 2031
MslI	CAYNNNNRTG	4 cut(s)	135, 593, 1764, 1910
MspI	CCGG	5 cut(s)	264, 642, 1558, 1645, 1966
MspR9I	CCNGG	7 cut(s)	281, 643, 809, 885, 1645, 1646, 1795
MunI	CAATTG	1 cut(s)	1611
Mva1269I	GAATGC	2 cut(s)	1182, 2052
MvaI	CCWGG	4 cut(s)	281, 809, 885, 1795
MvnI	CGCG	2 cut(s)	537, 1002
MwoI	GCNNNNNNNGC	4 cut(s)	1841, 1895, 1962, 2090
NciI	CCSGG	3 cut(s)	643, 1645, 1646
NcoI	CCATGG	1 cut(s)	136
NdeI	CATATG	1 cut(s)	617
NdeII	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
NlaIV	GGNNCC	5 cut(s)	640, 719, 1594, 1643, 2195
NmuCI	GTSAC	3 cut(s)	611, 1543, 2207
NruI	TCGCGA	1 cut(s)	1002
NsbI	TGCGCA	1 cut(s)	1272
NsiI	ATGCAT	1 cut(s)	590
NspI	RCATGY	3 cut(s)	134, 588, 1358
NspV	TTCGAA	1 cut(s)	1220
PaeI	GCATGC	1 cut(s)	588
PciSI	GCTCTTC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 1177, 1498
PctI	GAATGC	2 cut(s)	1182, 2052
PdmI	GAANNNNTTC	3 cut(s)	1200, 1226, 1368
PfeI	GAWTC	4 cut(s)	227, 260, 343, 1009
PfoI	TCCNGGA	2 cut(s)	641, 883
PleI	GAGTC	2 cut(s)	724, 1614
PpsI	GAGTC	2 cut(s)	724, 1614
PpuMI	RGGWCCY	2 cut(s)	718, 2194
Psp5II	RGGWCCY	2 cut(s)	718, 2194
Psp6I	CCWGG	4 cut(s)	279, 807, 883, 1793
PspGI	CCWGG	4 cut(s)	279, 807, 883, 1793
PspN4I	GGNNCC	5 cut(s)	640, 719, 1594, 1643, 2195
PspPI	GGNCC	6 cut(s)	364, 553, 598, 718, 1641, 2194
PspPPI	RGGWCCY	2 cut(s)	718, 2194
PstNI	CAGNNNCTG	2 cut(s)	760, 2114
PsuI	RGATCY	1 cut(s)	934
RruI	TCGCGA	1 cut(s)	1002
RsaI	GTAC	1 cut(s)	1504
RsaNI	GTAC	1 cut(s)	1503
RseI	CAYNNNNRTG	4 cut(s)	135, 593, 1764, 1910
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	5 cut(s)	168, 294, 1307, 1568, 2031
Sau3AI	GATC	6 cut(s)	854, 898, 934, 964, 1242, 1666
Sau96I	GGNCC	6 cut(s)	364, 553, 598, 718, 1641, 2194
SchI	GAGTC	2 cut(s)	724, 1615
ScrFI	CCNGG	7 cut(s)	281, 643, 809, 885, 1645, 1646, 1795
SduI	GDGCHC	2 cut(s)	1833, 1891
SfaNI	GCATC	6 cut(s)	110, 295, 412, 1708, 1853, 2101
SfuI	TTCGAA	1 cut(s)	1220
SinI	GGWCC	4 cut(s)	364, 718, 1641, 2194
SmaI	CCCGGG	1 cut(s)	1646
SmiMI	CAYNNNNRTG	4 cut(s)	135, 593, 1764, 1910
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SphI	GCATGC	1 cut(s)	588
SsiI	CCGC	6 cut(s)	700, 1343, 1930, 2159, 2191, 2249
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	7 cut(s)	257, 311, 1236, 1688, 1983, 2136, 2175
StyD4I	CCNGG	7 cut(s)	279, 641, 807, 883, 1643, 1644, 1793
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	5 cut(s)	684, 1215, 1447, 1463, 2207
TaiI	ACGT	2 cut(s)	1111, 1504
TaqI	TCGA	3 cut(s)	967, 1220, 1492
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	4 cut(s)	227, 260, 343, 1009
Tru1I	TTAA	5 cut(s)	168, 294, 1307, 1568, 2031
Tru9I	TTAA	5 cut(s)	168, 294, 1307, 1568, 2031
TscAI	CASTG	7 cut(s)	600, 1146, 1218, 1258, 1891, 2026, 2212
TseFI	GTSAC	3 cut(s)	611, 1543, 2207
Tsp45I	GTSAC	3 cut(s)	611, 1543, 2207
TspGWI	ACGGA	1 cut(s)	1166
TspMI	CCCGGG	1 cut(s)	1644
TspRI	CASTG	7 cut(s)	600, 1146, 1218, 1258, 1891, 2026, 2212
VneI	GTGCAC	1 cut(s)	1829
VpaK11BI	GGWCC	4 cut(s)	364, 718, 1641, 2194
XapI	RAATTY	4 cut(s)	496, 996, 1770, 1945
XbaI	TCTAGA	2 cut(s)	1235, 1687
XceI	RCATGY	3 cut(s)	134, 588, 1358
XmaI	CCCGGG	1 cut(s)	1644
XmnI	GAANNNNTTC	3 cut(s)	1200, 1226, 1368
XspI	CTAG	7 cut(s)	257, 311, 1236, 1688, 1983, 2136, 2175
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.