Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Reverse (-)

67748171 .. 67754572

Gene Structure 6402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG469600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGGCCCCGCCTTTCGTGTTCGAACCCCCGAGCGATGAAGAATATTCCGAAGCAGAGGAAGAAGACTACTCAGACGAAGAAGAAGAACAACAAGAGGAACAAGAAGAAGAGGCGTCTGTAAAACCCTCGCGTGCTCAATCCCCATGGGACTTCGCTTCCTACTCCGAAACCGTCGCCGAAGAACACGCCCGCCGGAGCACCACCTCCGTCGACGACAAAATCTCCAAAGCCCGCCAGCAACTCTCCGTCCCGCTCCCCGACCCGGACGACGCTTCTAGCTCCGGATCCGAATCCGATAGACGAGAAGATTATAAACCAGAAGATGAGGAAGACGATGATGTAGGTACAAATGCGGCTGAGAACAAGCCTTTCTTTGCTTCATCTGACGGCACGTCGTTTCATGCGAATTCGTTCCTGGAGCTCAATTTGTCGAGACCCCTGCTTCGGGCTTGCGAGAAATTGGGCTATGTTAAGCCCACGCCGATTCAGGCAGCGTGCATTCCACTGGCCTTGTCTGGGAGGGATATATGCGGAAGTGCCATTACTGGTTCCGGGAAGACGGCTGCTTTTGCTTTACCTACACTGGAGAGATTATTGTTTCGCCCCAAGCGGGTGCCTGCCATAAGGGTCCTTGTTCTAACTCCTGCCAGAGAACTGGCGGTTCAGGTTCATAGTATGATTGAGAAACTTGCTCAATTTACTGATATCAGATGTTGCCTGGTTGTTGGAGGCCTTTCACTAAAGGTTCAAGAAGCAGCCTTGAGATCCATGCCGGATATCGTCGTGGCTACCCCGGGACGCATTATAGATCATTTACGAAATTCTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATTCTTGATGAGGCAGATCGCCTGCTGGAAGTTGGGTTTAGTGCTGAAATTCGTGAGCTGCTTCGAGTATGCCCCAAAAGGAGACAAACCATGCTATTTTCAGCTACGATGACTGAAGAAGTTGATGAACTTGTCCAGCTTTCTCTCACCAAACCACTACGCCTTTCAGCTGACCCATCCGCGAAACGGCCAGTGACACTAACTGAGGAGGTGGTTCGGATACGACGTATGCGTGAACTAAACCAGGAAGCAGTTCTACTTGCATTGTGCACAAAGACATTCAGAGAAAGAGTGATCATATTCAGTGGGACAAAACAGGCTGCACATAGGCTGAAGATCTTATTTGGGTTAGCTGGCTTAAAAGCCGCTGAGCTTCATGGCAACCTTACTCAAGTGCAGCGCCTAGATGCATTGGAACTTTTCAGGAGGGAAAAGGTTGACTTTTTGATTGCAACAGATGTCGCTGCTCGTGGTCTTGACATAATTGGTGTTGAAACAGTTATAAATTATGCATGTCCACGTGATCTTACAAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGGAAAGAGGGATGCGCTGTTACTTTCGTGACAGATACTGACCGATCTCTGTTAAAAGCTATTGCAAAAAGAGCTGGTTCAAAGCTGAGGAGTCGAATTGTTGCAGAGCAGTCAATTACTAAGTGGTCTCAGATAATTGAGCAAATGGAAGATCAAGTGGCTACAATTCTTCGAGAAGAGAGCGAAGAGACGGCGCTAAGAAGAGCTGAAATGGAAGCAACAAAGGTAGAGAATTTGATTGCACACAGAGATGAAATTTATTCACGCCCCAAAAGGACCTGGATTGTGACTGAAAAGGAGAAGAAGGAGGTAGTGAAGGCATCTAAGGCATCCGGTGAAAGAGAAAAACATTCTGGAAACGAGGTGATCAGTGCTGAACAAGCGGAAGAACTGAAAATGAAAGAAAAGAGGAAACGAGAGCGTGAGAAAAATTTGCCGCGTAAGAAGCGCCGAAATTTGGAAGCAGCTAGAGAAATGTTGGAGGAAGAAAATCAAAATCGAAAGTCAGAAGGTAGTGGAACAACCAAGGACAAGACAGGAGTGAAACTTGTTGACTTGGGTTACCGACGGGCAAAAGCTGTGAAGGCAGCAAATAAGGCAATGGATACTGGCAAGATTGTGAAGAAGGATAGCAAGAAATCTAATCGTCTTCCGCAAAGAACCCAGTCAAGGACAGATGAGATGCAGGACCTGTTCCAGAGTGATATGAGTCAAGGGAAAAAGGATCGAAAAAGCGGTGGCATGGGAAAGAAAAAGTCCAAGAATTCATTTAAAAGCAAGTCGAGGTACAAACGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

741

Amino Acids

83.3

Weight (kDa)

8.67

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	160 - 330	2.1e-45	DEAD/DEAH box helicase
Helicase_C	PF00271	371 - 476	8.3e-28	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	312, 1361
AccB1I	GGYRCC	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	3 cut(s)	130, 1040, 1864
AccIII	TCCGGA	1 cut(s)	281
AclWI	GGATC	4 cut(s)	279, 292, 759, 2157
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	8 cut(s)	406, 820, 906, 1657, 1680, 1855, 1879, 2188
AcuI	CTGAAG	2 cut(s)	993, 1211
AcvI	CACGTG	1 cut(s)	1379
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	3 cut(s)	346, 1414, 2213
AfiI	CCNNNNNNNGG	8 cut(s)	262, 444, 445, 516, 610, 1044, 1882, 2094
AgsI	TTSAA	3 cut(s)	749, 1352, 1506
AhdI	GACNNNNNGTC	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	393
AjnI	CCWGG	4 cut(s)	414, 717, 1101, 1703
Alw21I	GWGCWC	4 cut(s)	136, 200, 423, 1130
Alw26I	GTCTC	4 cut(s)	427, 934, 1557, 1607
Alw44I	GTGCAC	1 cut(s)	1126
AlwI	GGATC	4 cut(s)	279, 292, 759, 2157
AlwNI	CAGNNNCTG	2 cut(s)	1463, 2116
Ama87I	CYCGRG	2 cut(s)	28, 793
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	4 cut(s)	3, 507, 730, 1046
ApaLI	GTGCAC	1 cut(s)	1126
ApeKI	GCWGC	9 cut(s)	491, 563, 755, 916, 1178, 1255, 1322, 1889, 2012
ApoI	RAATTY	8 cut(s)	406, 820, 906, 1657, 1680, 1855, 1879, 2188
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
Asp700I	GAANNNNTTC	2 cut(s)	410, 1110
AspLEI	GCGC	4 cut(s)	1260, 1442, 1621, 1875
AspS9I	GGNCC	4 cut(s)	4, 628, 1701, 2113
AsuC2I	CCSGG	4 cut(s)	263, 553, 794, 795
AsuHPI	GGTGA	3 cut(s)	997, 1772, 1801
AsuII	TTCGAA	1 cut(s)	21
AvaI	CYCGRG	2 cut(s)	28, 793
AvaII	GGWCC	3 cut(s)	628, 1701, 2113
BaeGI	GKGCMC	1 cut(s)	1130
BamHI	GGATCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	423
BarI	GAAGNNNNNNTAC	4 cut(s)	526, 558, 1098, 1130
BauI	CACGAG	1 cut(s)	1326
BbrPI	CACGTG	1 cut(s)	1379
BbsI	GAAGAC	4 cut(s)	69, 336, 563, 2066
Bbv12I	GWGCWC	4 cut(s)	136, 200, 423, 1130
BbvCI	CCTCAGC	1 cut(s)	1511
BbvI	GCAGC	9 cut(s)	503, 550, 767, 903, 1165, 1267, 1309, 1901, 2024
BccI	CCATC	1 cut(s)	1042
BceAI	ACGGC	4 cut(s)	403, 576, 1061, 1632
BcgI	CGANNNNNNTGC	2 cut(s)	421, 455
BciT130I	CCWGG	4 cut(s)	416, 719, 1103, 1705
BciVI	GTATCC	2 cut(s)	1071, 2023
BclI	TGATCA	2 cut(s)	1152, 1791
BcnI	CCSGG	4 cut(s)	263, 553, 794, 795
BcoDI	GTCTC	4 cut(s)	427, 934, 1557, 1607
BfaI	CTAG	3 cut(s)	276, 1262, 1893
BfoI	RGCGCY	3 cut(s)	1261, 1622, 1876
BfuI	GTATCC	2 cut(s)	1071, 2023
BglII	AGATCT	1 cut(s)	1194
BlpI	GCTNAGC	1 cut(s)	1227
Bme1390I	CCNGG	8 cut(s)	263, 416, 553, 719, 794, 795, 1103, 1705
Bme18I	GGWCC	3 cut(s)	628, 1701, 2113
BmeRI	GACNNNNNGTC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	28, 793
BmgBI	CACGTC	1 cut(s)	393
BmgT120I	GGNCC	4 cut(s)	4, 628, 1701, 2113
BmiI	GGNNCC	5 cut(s)	6, 286, 550, 615, 629
BmrFI	CCNGG	8 cut(s)	263, 416, 553, 719, 794, 795, 1103, 1705
BmrI	ACTGGG	1 cut(s)	2083
BmsI	GCATC	5 cut(s)	1255, 1427, 1754, 1763, 2097
BmuI	ACTGGG	1 cut(s)	2083
BpiI	GAAGAC	4 cut(s)	69, 336, 563, 2066
BpmI	CTGGAG	2 cut(s)	437, 605
Bpu10I	CCTNAGC	1 cut(s)	1511
Bpu1102I	GCTNAGC	1 cut(s)	1227
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	781, 1233
BpuMI	CCSGG	4 cut(s)	263, 553, 794, 795
BsaAI	YACGTR	1 cut(s)	1379
BsaBI	GATNNNNATC	1 cut(s)	289
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	2 cut(s)	427, 1557
BsaJI	CCNNGG	4 cut(s)	143, 792, 793, 1950
BsaWI	WCCGGW	2 cut(s)	281, 1757
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	8 cut(s)	262, 444, 445, 516, 610, 1044, 1882, 2094
Bse1I	ACTGG	7 cut(s)	510, 550, 588, 660, 1049, 2038, 2089
Bse3DI	GCAATG	1 cut(s)	2031
Bse8I	GATNNNNATC	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	4 cut(s)	416, 719, 1103, 1705
BseDI	CCNNGG	4 cut(s)	143, 792, 793, 1950
BseGI	GGATG	4 cut(s)	847, 1034, 1442, 1754
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	8 cut(s)	262, 444, 445, 516, 610, 1044, 1882, 2094
BseMI	GCAATG	1 cut(s)	2031
BseMII	CTCAG	6 cut(s)	84, 348, 1053, 1218, 1502, 1568
BseNI	ACTGG	7 cut(s)	510, 550, 588, 660, 1049, 2038, 2089
BseRI	GAGGAG	2 cut(s)	1079, 1528
BseSI	GKGCMC	1 cut(s)	1130
BseXI	GCAGC	9 cut(s)	503, 550, 767, 903, 1165, 1267, 1309, 1901, 2024
BseYI	CCCAGC	1 cut(s)	1424
BsgI	GTGCAG	2 cut(s)	1164, 1274
Bsh1236I	CGCG	3 cut(s)	130, 1040, 1864
BshFI	GGCC	4 cut(s)	5, 509, 732, 1048
BshNI	GGYRCC	1 cut(s)	613
BsiHKAI	GWGCWC	4 cut(s)	136, 200, 423, 1130
BsiHKCI	CYCGRG	2 cut(s)	28, 793
BsiSI	CCGG	7 cut(s)	193, 263, 282, 552, 773, 794, 1758
BslFI	GGGAC	4 cut(s)	161, 233, 810, 1180
BslI	CCNNNNNNNGG	8 cut(s)	262, 444, 445, 516, 610, 1044, 1882, 2094
BsmAI	GTCTC	4 cut(s)	427, 934, 1557, 1607
BsmBI	CGTCTC	1 cut(s)	1607
BsmFI	GGGAC	4 cut(s)	161, 233, 810, 1180
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	5, 509, 732, 1048
Bso31I	GGTCTC	2 cut(s)	427, 1557
BsoBI	CYCGRG	2 cut(s)	28, 793
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	4 cut(s)	136, 200, 423, 1130
Bsp13I	TCCGGA	1 cut(s)	281
Bsp1720I	GCTNAGC	1 cut(s)	1227
Bsp19I	CCATGG	1 cut(s)	143
BspANI	GGCC	4 cut(s)	5, 509, 732, 1048
BspCNI	CTCAG	6 cut(s)	83, 349, 1054, 1219, 1503, 1567
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	130, 1040, 1864
BspLI	GGNNCC	5 cut(s)	6, 286, 550, 615, 629
BspPI	GGATC	4 cut(s)	279, 292, 759, 2157
BspQI	GCTCTTC	1 cut(s)	1621
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	613
BspTNI	GGTCTC	2 cut(s)	427, 1557
BsrBI	CCGCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	2031
BsrI	ACTGG	7 cut(s)	510, 550, 588, 660, 1049, 2038, 2089
BssECI	CCNNGG	4 cut(s)	143, 792, 793, 1950
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	1326
BssT1I	CCWWGG	2 cut(s)	143, 1950
Bst2BI	CACGAG	1 cut(s)	1326
Bst2UI	CCWGG	4 cut(s)	416, 719, 1103, 1705
Bst4CI	ACNGT	2 cut(s)	172, 1357
Bst6I	CTCTTC	4 cut(s)	102, 1596, 1605, 1621
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	1379
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	9 cut(s)	132, 190, 232, 236, 451, 496, 618, 881, 1213
BstDEI	CTNAG	9 cut(s)	70, 357, 1062, 1227, 1511, 1545, 1554, 1622, 1749
BstDSI	CCRYGG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	1985
BstF5I	GGATG	4 cut(s)	847, 1034, 1442, 1754
BstFNI	CGCG	3 cut(s)	130, 1040, 1864
BstH2I	RGCGCY	3 cut(s)	1261, 1622, 1876
BstHHI	GCGC	4 cut(s)	1260, 1442, 1621, 1875
BstMAI	GTCTC	4 cut(s)	427, 934, 1557, 1607
BstMWI	GCNNNNNNNGC	7 cut(s)	569, 1496, 1751, 1805, 1870, 2009, 2021
BstNI	CCWGG	4 cut(s)	416, 719, 1103, 1705
BstNSI	RCATGY	1 cut(s)	1374
BstPI	GGTNACC	1 cut(s)	1985
BstSCI	CCNGG	8 cut(s)	261, 414, 551, 717, 792, 793, 1101, 1703
BstSLI	GKGCMC	1 cut(s)	1130
BstUI	CGCG	3 cut(s)	130, 1040, 1864
BstV1I	GCAGC	9 cut(s)	503, 550, 767, 903, 1165, 1267, 1309, 1901, 2024
BstV2I	GAAGAC	4 cut(s)	69, 336, 563, 2066
BstX2I	RGATCY	3 cut(s)	284, 764, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	3 cut(s)	284, 764, 1194
BsuI	GTATCC	2 cut(s)	1071, 2023
BsuRI	GGCC	4 cut(s)	5, 509, 732, 1048
BtgI	CCRYGG	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	393
BtsCI	GGATG	4 cut(s)	847, 1034, 1442, 1754
BtsIMutI	CAGTG	5 cut(s)	503, 581, 1056, 1168, 1801
Cac8I	GCNNGC	9 cut(s)	132, 190, 232, 236, 451, 496, 618, 881, 1213
CaiI	CAGNNNCTG	2 cut(s)	1463, 2116
CfoI	GCGC	4 cut(s)	1260, 1442, 1621, 1875
Cfr13I	GGNCC	4 cut(s)	4, 628, 1701, 2113
Cfr9I	CCCGGG	1 cut(s)	793
CseI	GACGC	3 cut(s)	102, 278, 807
Csp6I	GTAC	3 cut(s)	345, 1413, 2212
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	7 cut(s)	144, 401, 769, 949, 1235, 1371, 2167
CviQI	GTAC	3 cut(s)	345, 1413, 2212
DdeI	CTNAG	9 cut(s)	70, 357, 1062, 1227, 1511, 1545, 1554, 1622, 1749
DraI	TTTAAA	1 cut(s)	2197
DriI	GACNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	4 cut(s)	102, 1596, 1605, 1621
Eam1105I	GACNNNNNGTC	1 cut(s)	391
EarI	CTCTTC	4 cut(s)	102, 1596, 1605, 1621
Ecl136II	GAGCTC	1 cut(s)	421
Eco130I	CCWWGG	2 cut(s)	143, 1950
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	2 cut(s)	427, 1557
Eco32I	GATATC	2 cut(s)	706, 778
Eco47I	GGWCC	3 cut(s)	628, 1701, 2113
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	993, 1211
Eco72I	CACGTG	1 cut(s)	1379
Eco88I	CYCGRG	2 cut(s)	28, 793
Eco91I	GGTNACC	1 cut(s)	1985
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	3 cut(s)	628, 1701, 2113
EcoO65I	GGTNACC	1 cut(s)	1985
EcoRI	GAATTC	2 cut(s)	406, 2188
EcoRII	CCWGG	4 cut(s)	414, 717, 1101, 1703
EcoRV	GATATC	2 cut(s)	706, 778
EcoT14I	CCWWGG	2 cut(s)	143, 1950
EcoT22I	ATGCAT	2 cut(s)	1270, 1372
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	2 cut(s)	143, 1950
Esp3I	CGTCTC	1 cut(s)	1607
FaeI	CATG	7 cut(s)	147, 404, 772, 952, 1238, 1374, 2170
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 1283, 1315
FaqI	GGGAC	4 cut(s)	161, 233, 810, 1180
FatI	CATG	7 cut(s)	143, 400, 768, 948, 1234, 1370, 2166
FauI	CCCGC	5 cut(s)	15, 197, 239, 258, 603
FbaI	TGATCA	2 cut(s)	1152, 1791
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	4 cut(s)	854, 1021, 1449, 1741
FriOI	GRGCYC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	276, 1262, 1893
GlaI	GCGC	4 cut(s)	1259, 1441, 1620, 1874
GsaI	CCCAGC	1 cut(s)	1428
GsuI	CTGGAG	2 cut(s)	437, 605
HaeII	RGCGCY	3 cut(s)	1261, 1622, 1876
HaeIII	GGCC	4 cut(s)	5, 509, 732, 1048
HapII	CCGG	7 cut(s)	193, 263, 282, 552, 773, 794, 1758
HgaI	GACGC	3 cut(s)	102, 278, 807
HhaI	GCGC	4 cut(s)	1260, 1442, 1621, 1875
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	7 cut(s)	147, 404, 772, 952, 1238, 1374, 2170
Hin6I	GCGC	4 cut(s)	1258, 1440, 1619, 1873
HinP1I	GCGC	4 cut(s)	1258, 1440, 1619, 1873
HincII	GTYRAC	3 cut(s)	211, 1297, 1978
HindII	GTYRAC	3 cut(s)	211, 1297, 1978
HinfI	GANTC	4 cut(s)	290, 484, 1516, 2134
HpaII	CCGG	7 cut(s)	193, 263, 282, 552, 773, 794, 1758
HphI	GGTGA	3 cut(s)	997, 1772, 1801
Hpy166II	GTNNAC	6 cut(s)	211, 1094, 1128, 1297, 1376, 1978
Hpy8I	GTNNAC	6 cut(s)	211, 1094, 1128, 1297, 1376, 1978
Hpy99I	CGWCG	8 cut(s)	176, 212, 215, 272, 397, 785, 1086, 1995
HpyAV	CCTTC	5 cut(s)	1723, 1735, 1928, 2002, 2044
HpyCH4III	ACNGT	2 cut(s)	172, 1357
HpyCH4IV	ACGT	3 cut(s)	392, 1084, 1378
HpyF10VI	GCNNNNNNNGC	7 cut(s)	569, 1496, 1751, 1805, 1870, 2009, 2021
HpyF3I	CTNAG	9 cut(s)	70, 357, 1062, 1227, 1511, 1545, 1554, 1622, 1749
HpySE526I	ACGT	3 cut(s)	392, 1084, 1378
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	7 cut(s)	147, 404, 772, 952, 1238, 1374, 2170
HspAI	GCGC	4 cut(s)	1258, 1440, 1619, 1873
Kpn2I	TCCGGA	1 cut(s)	281
Ksp22I	TGATCA	2 cut(s)	1152, 1791
LguI	GCTCTTC	1 cut(s)	1621
LmnI	GCTCC	4 cut(s)	195, 258, 284, 418
Lsp1109I	GCAGC	9 cut(s)	503, 550, 767, 903, 1165, 1267, 1309, 1901, 2024
LweI	GCATC	5 cut(s)	1255, 1427, 1754, 1763, 2097
MaeI	CTAG	3 cut(s)	276, 1262, 1893
MaeII	ACGT	3 cut(s)	392, 1084, 1378
MaeIII	GTNAC	5 cut(s)	1051, 1444, 1453, 1711, 1985
MbiI	CCGCTC	1 cut(s)	253
MflI	RGATCY	3 cut(s)	284, 764, 1194
MhlI	GDGCHC	4 cut(s)	136, 200, 423, 1130
MlyI	GAGTC	2 cut(s)	1525, 2143
MmeI	TCCRAC	2 cut(s)	706, 1884
Mph1103I	ATGCAT	2 cut(s)	1270, 1372
MroI	TCCGGA	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	410, 1110
MseI	TTAA	4 cut(s)	471, 1217, 1478, 2196
MslI	CAYNNNNRTG	1 cut(s)	1674
MspA1I	CMGCKG	2 cut(s)	1028, 1226
MspI	CCGG	7 cut(s)	193, 263, 282, 552, 773, 794, 1758
MspR9I	CCNGG	8 cut(s)	263, 416, 553, 719, 794, 795, 1103, 1705
Mva1269I	GAATGC	1 cut(s)	498
MvaI	CCWGG	4 cut(s)	416, 719, 1103, 1705
MvnI	CGCG	3 cut(s)	130, 1040, 1864
MwoI	GCNNNNNNNGC	7 cut(s)	569, 1496, 1751, 1805, 1870, 2009, 2021
NciI	CCSGG	4 cut(s)	263, 553, 794, 795
NcoI	CCATGG	1 cut(s)	143
NlaIII	CATG	7 cut(s)	147, 404, 772, 952, 1238, 1374, 2170
NlaIV	GGNNCC	5 cut(s)	6, 286, 550, 615, 629
NmuCI	GTSAC	3 cut(s)	1051, 1453, 1711
NsiI	ATGCAT	2 cut(s)	1270, 1372
NspI	RCATGY	1 cut(s)	1374
NspV	TTCGAA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	4 cut(s)	401, 1081, 1087, 1408
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	2 cut(s)	410, 1110
PfeI	GAWTC	2 cut(s)	290, 484
PfoI	TCCNGGA	2 cut(s)	414, 551
PleI	GAGTC	2 cut(s)	1524, 2142
PmaCI	CACGTG	1 cut(s)	1379
PmlI	CACGTG	1 cut(s)	1379
PpsI	GAGTC	2 cut(s)	1524, 2142
Ppu21I	YACGTR	1 cut(s)	1379
PpuMI	RGGWCCY	3 cut(s)	628, 1701, 2113
PsiI	TTATAA	2 cut(s)	312, 1361
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	3 cut(s)	628, 1701, 2113
Psp6I	CCWGG	4 cut(s)	414, 717, 1101, 1703
PspCI	CACGTG	1 cut(s)	1379
PspEI	GGTNACC	1 cut(s)	1985
PspFI	CCCAGC	1 cut(s)	1424
PspGI	CCWGG	4 cut(s)	414, 717, 1101, 1703
PspN4I	GGNNCC	5 cut(s)	6, 286, 550, 615, 629
PspPI	GGNCC	4 cut(s)	4, 628, 1701, 2113
PspPPI	RGGWCCY	3 cut(s)	628, 1701, 2113
PstNI	CAGNNNCTG	2 cut(s)	1463, 2116
PsuI	RGATCY	3 cut(s)	284, 764, 1194
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	3 cut(s)	346, 1414, 2213
RsaNI	GTAC	3 cut(s)	345, 1413, 2212
RseI	CAYNNNNRTG	1 cut(s)	1674
SacI	GAGCTC	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	1621
SaqAI	TTAA	4 cut(s)	471, 1217, 1478, 2196
Sau96I	GGNCC	4 cut(s)	4, 628, 1701, 2113
SchI	GAGTC	2 cut(s)	1525, 2143
ScrFI	CCNGG	8 cut(s)	263, 416, 553, 719, 794, 795, 1103, 1705
SduI	GDGCHC	4 cut(s)	136, 200, 423, 1130
SfaNI	GCATC	5 cut(s)	1255, 1427, 1754, 1763, 2097
SfuI	TTCGAA	1 cut(s)	21
SgrDI	CGTCGACG	1 cut(s)	209
SinI	GGWCC	3 cut(s)	628, 1701, 2113
SmaI	CCCGGG	1 cut(s)	795
SmiMI	CAYNNNNRTG	1 cut(s)	1674
SmlI	CTYRAG	2 cut(s)	760, 1248
SmoI	CTYRAG	2 cut(s)	760, 1248
SseBI	AGGCCT	1 cut(s)	732
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	3 cut(s)	276, 1262, 1893
SstI	GAGCTC	1 cut(s)	423
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	8 cut(s)	261, 414, 551, 717, 792, 793, 1101, 1703
StyI	CCWWGG	2 cut(s)	143, 1950
TaaI	ACNGT	2 cut(s)	172, 1357
TaiI	ACGT	3 cut(s)	395, 1087, 1381
TaqII	GACCGA	1 cut(s)	1482
TauI	GCSGC	3 cut(s)	356, 1226, 1864
TfiI	GAWTC	2 cut(s)	290, 484
Tru1I	TTAA	4 cut(s)	471, 1217, 1478, 2196
Tru9I	TTAA	4 cut(s)	471, 1217, 1478, 2196
TscAI	CASTG	5 cut(s)	510, 588, 1056, 1168, 1801
TseFI	GTSAC	3 cut(s)	1051, 1453, 1711
TseI	GCWGC	9 cut(s)	491, 563, 755, 916, 1178, 1255, 1322, 1889, 2012
Tsp45I	GTSAC	3 cut(s)	1051, 1453, 1711
TspGWI	ACGGA	2 cut(s)	196, 235
TspMI	CCCGGG	1 cut(s)	793
TspRI	CASTG	5 cut(s)	510, 588, 1056, 1168, 1801
VneI	GTGCAC	1 cut(s)	1126
VpaK11BI	GGWCC	3 cut(s)	628, 1701, 2113
XapI	RAATTY	8 cut(s)	406, 820, 906, 1657, 1680, 1855, 1879, 2188
XceI	RCATGY	1 cut(s)	1374
XmaI	CCCGGG	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	410, 1110
XspI	CTAG	3 cut(s)	276, 1262, 1893
Zsp2I	ATGCAT	2 cut(s)	1270, 1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.