Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350977.1

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Forward (+)

707 .. 1042

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggccccgtctttcgtgttcgaacccccgagcgatgaagaatattccgaagcagaggaagaagactactcagacgaagaagaagaagaacaagaggaacaagaagcgtctgtaaaaccctcgcgtgctcgcacttctcaatccccatgggacttcgcttcctactccgaaaccgtcgccgaagaacacgcccgccggagcaccacctccgtcgacgacaaaatctccaaagcccgccagcaactacccgtcccgctccccgacccggacgacgcttctagctccggatccgaatccgaatccgatagacaagtaacttcctcaaaccctaacaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

112

Amino Acids

12.51

Weight (kDa)

4.05

Isoelectric Point (pI)

94.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	3 cut(s)	193, 235, 254
AclWI	GGATC	2 cut(s)	282, 295
AfiI	CCNNNNNNNGG	1 cut(s)	265
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw21I	GWGCWC	2 cut(s)	130, 203
AlwI	GGATC	2 cut(s)	282, 295
Ama87I	CYCGRG	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	284
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	130, 203
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 289
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	292
BseAI	TCCGGA	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	130, 203
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	196, 266, 285
BslFI	GGGAC	2 cut(s)	164, 236
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	164, 236
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	130, 203
Bsp13I	TCCGGA	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	3 cut(s)	193, 235, 254
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	83
BspEI	TCCGGA	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	6, 289
BspPI	GGATC	2 cut(s)	282, 295
BspT104I	TTCGAA	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	5 cut(s)	126, 130, 193, 235, 239
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	48
Cac8I	GCNNGC	5 cut(s)	126, 130, 193, 235, 239
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	96, 281
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	3 cut(s)	5, 233, 282
CviKI_1	RGCY	3 cut(s)	5, 233, 282
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	150
FaiI	YATR	1 cut(s)	148
FaqI	GGGAC	2 cut(s)	164, 236
FatI	CATG	1 cut(s)	146
FauI	CCCGC	3 cut(s)	200, 242, 261
FblI	GTMKAC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	196, 266, 285
HgaI	GACGC	2 cut(s)	96, 281
Hin1II	CATG	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	293, 299
HpaII	CCGG	3 cut(s)	196, 266, 285
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	49, 73, 169, 292, 298, 304
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	179, 215, 218, 275
HpyCH4III	ACNGT	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	3 cut(s)	198, 261, 287
LpnPI	CCDG	4 cut(s)	209, 251, 279, 298
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	289
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	287
MboII	GAAGA	8 cut(s)	50, 71, 74, 89, 92, 95, 98, 194
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	130, 203
MnlI	CCTC	5 cut(s)	49, 88, 130, 217, 331
MroI	TCCGGA	1 cut(s)	284
MspI	CCGG	3 cut(s)	196, 266, 285
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	124
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	2 cut(s)	6, 289
NspV	TTCGAA	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	293, 299
PspN4I	GGNNCC	2 cut(s)	6, 289
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	130, 203
SetI	ASST	2 cut(s)	209, 284
SfuI	TTCGAA	1 cut(s)	21
SgrDI	CGTCGACG	1 cut(s)	212
SsiI	CCGC	3 cut(s)	193, 235, 254
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	21, 213
TfiI	GAWTC	2 cut(s)	293, 299
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.