Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Forward (+)

62313291 .. 62319899

Gene Structure 6609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG433100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGCCCCGTCTTTCGTGTTCGAACCCCCGAGCGATGAAGAATATTCCGAAGCAGAGGAAGAAGACTACTCAGACGGAGAAGAAGAAGAAGAAGAACAAGAGGAACAAGAAGCGTCTGTAAAACCCTCGCGTGCTCGCACTTCTCAATCCCCATGGGACTTCGCTTCCTACTCCGAAACCGTCGCCGAAGAACACGCCCGCCGGAGCACCACCTCCGTCGACGAAAAAATCTCCAAAGCCCGCCAGCAACTATCCGTCCCGCTCCCCGACCCGGACGACGCTTCTAGCTCCGGATCCGAATCCGATAGACAAGAAGATTATAAACCAGAAGATGAGGAAGACGATGTAGGTGCAAATGCGGCTGAGAATAAGCCTTTCTTTGCTTCATCTGACAGCACGTCGTTTCATGCGAATTCGTTCCTGGAGCTCAATTTGTCGAGACCCCTGCTTCGGGCTTGCGAGAAATTGGGCTATGTTAAGCCCACGCCAATTCAGGCAGCTTGCATTCCACTGGCCTTGTCTGGGAGGGATATATGCGGAAGTGCCATTACTGGTTCCGGGAAGACGGCTGCTTTTGCGTTACCTACACTGGAAAGATTATTGTTTCGCCCCAAGCGGGTGCCTGCCATAAGGGTCCTTGTTCTGACTCCTGCCAGAGAACTGGCGGTTCAGGTTCATAGTATGATTGAGAAACTTGCTCAATTTACTGATATCAGATGTTGCCTGGTTGTTGGAGGCCTTTCACTAAAGGTTCAAGAAGCAGCCTTGAGATCCATGCCAGATATCGTCGTGGCTACCCCGGGACGCATTATAGATCATTTACGAAATTCTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATTCTTGATGAGGCAGATCGCCTGCTGGAAGTTGGGTTTAGTGCTGAAATTCGTGAGCTGCTTCGAGTATGCCCCAAAAGGAGACAAACCATGCTATTTTCAGCTACGATGACTGAAGAAGTTGATGAACTTGTCCAGCTTTCTCTCACCAAACCACTACGCCTTTCAGCTGACCCATCCGCGAAACGGCCAGTGACACTAACCGAGGAGGTGGTTCGGATACGACGTATGCGTGAACTAAACCAGGAAGCAGTTCTACTTGCATTGTGCACAAAGACATTCAGAGAAAGAGTGATCATATTCAGTGGGACAAAACAGGCCGCACATAGGCTGAAGATCTTATTTGGGTTAGCTGGCTTGAAAGCCGCTGAGCTTCATGGCAATCTTACTCAAGTGCAGCGCCTAGATGCATTGGAACTTTTCAGGAGGGAAAAGGTTGACTTTTTGATTGCAACAGATGTCGCTGCTCGTGGTCTTGACATAATTGGTGTTGAAACAGTTATAAATTATGCATGTCCACGTGATCTTACAAGCTATGTTCATCGAGTGGGTCGCACAGCAAGAGCAGGGAAAGAGGGATGCGCTGTTACTTTCGTGACAGATACTGACCGATCTCTGTTAAAAGCTATTGCAAAAAGAGCTGGTTCAAAGCTGAGGAGTCGAATTGTTGCAGAACAGTCAATTACTAAGTGGTCTCAGATAATTGAGCAAATGGAAGATCAAGTGGCTACAATTCTTCGAGAAGAGAGCGAAGAGACAGCGCTAAGAAGAGCTGAAATGGAAGCAACAAAGGTCGAGAATTTGATTGCACACAGAGATGAAATTTATTCACGCCCCAAAAGGACCTGGATTGTGACTGAAAAGGAGAAGAAGGAGGTAGTGAAGGCATCTAAGGCATCCGGTGAAAGAGAAAAACATTCTGGAAACGAGGTGATCAGTGCTGAACAAGCGGAAGAACTGAAAATGAAAGAAAAGAGGAAACGAGAGCGTGAGAAAAATTTGCCGCGTAAGAAGCGCCGAAATTTGGAAGCAGCTAGAGAAATGTTGGAGGAAGAAAATCAAAATCGAAAGTCAGAAGGTAGTGGAACAACTAAGGACAAGACAGGAGTGAAACTTGTTGACTTGGGTTACCGACGGGCAAAAGCTGTGAAGGCAGCAAATAAGGCAATGGATACTGGCAAGATTGTGAAGAAGGATAGCAAGAAATCTAATCGTCTTCCACAAAGAACCCAGTCAAGGACAGATGAGATGCAGGACCTGTTCCAGAGTGATATGAGTCAAGGGAAAAAGGATCGAAAAAGCGGTGGCGTGGGAAAGAAAAAGTCCAAGAATTCATTTAAAAGCAAGTCGAGGTACAAACGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

743

Amino Acids

83.4

Weight (kDa)

8.75

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	162 - 332	2.1e-45	DEAD/DEAH box helicase
Helicase_C	PF00271	373 - 478	8.3e-28	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	321, 1367
AccB1I	GGYRCC	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	262
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	3 cut(s)	130, 1046, 1870
AccIII	TCCGGA	1 cut(s)	290
AclWI	GGATC	4 cut(s)	288, 301, 765, 2163
AcoI	YGGCCR	1 cut(s)	1052
AcsI	RAATTY	8 cut(s)	412, 826, 912, 1663, 1686, 1861, 1885, 2194
AcuI	CTGAAG	2 cut(s)	999, 1217
AcvI	CACGTG	1 cut(s)	1385
AfaI	GTAC	1 cut(s)	2219
AfeI	AGCGCT	1 cut(s)	1626
AfiI	CCNNNNNNNGG	9 cut(s)	271, 450, 451, 522, 616, 1050, 1191, 1888, 2100
AgsI	TTSAA	4 cut(s)	755, 1225, 1358, 1512
AhdI	GACNNNNNGTC	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	4 cut(s)	420, 723, 1107, 1709
Alw21I	GWGCWC	4 cut(s)	136, 209, 429, 1136
Alw26I	GTCTC	4 cut(s)	433, 940, 1563, 1613
Alw44I	GTGCAC	1 cut(s)	1132
AlwI	GGATC	4 cut(s)	288, 301, 765, 2163
AlwNI	CAGNNNCTG	2 cut(s)	1469, 2122
Ama87I	CYCGRG	2 cut(s)	28, 799
Aor13HI	TCCGGA	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	1626
AoxI	GGCC	5 cut(s)	3, 513, 736, 1052, 1182
ApaLI	GTGCAC	1 cut(s)	1132
ApeKI	GCWGC	8 cut(s)	497, 569, 761, 922, 1261, 1328, 1895, 2018
ApoI	RAATTY	8 cut(s)	412, 826, 912, 1663, 1686, 1861, 1885, 2194
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
Asp700I	GAANNNNTTC	2 cut(s)	416, 1116
AspLEI	GCGC	4 cut(s)	1266, 1448, 1627, 1881
AspS9I	GGNCC	4 cut(s)	4, 634, 1707, 2119
AsuC2I	CCSGG	4 cut(s)	272, 559, 800, 801
AsuHPI	GGTGA	3 cut(s)	1003, 1778, 1807
AsuII	TTCGAA	1 cut(s)	21
AvaI	CYCGRG	2 cut(s)	28, 799
AvaII	GGWCC	3 cut(s)	634, 1707, 2119
BaeGI	GKGCMC	1 cut(s)	1136
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	429
BarI	GAAGNNNNNNTAC	4 cut(s)	532, 564, 1104, 1136
BauI	CACGAG	1 cut(s)	1332
BbrPI	CACGTG	1 cut(s)	1385
BbsI	GAAGAC	4 cut(s)	69, 345, 569, 2072
Bbv12I	GWGCWC	4 cut(s)	136, 209, 429, 1136
BbvCI	CCTCAGC	1 cut(s)	1517
BbvI	GCAGC	8 cut(s)	509, 556, 773, 909, 1273, 1315, 1907, 2030
BccI	CCATC	1 cut(s)	1048
BceAI	ACGGC	2 cut(s)	582, 1067
BcgI	CGANNNNNNTGC	4 cut(s)	332, 366, 427, 461
BciT130I	CCWGG	4 cut(s)	422, 725, 1109, 1711
BciVI	GTATCC	2 cut(s)	1077, 2029
BclI	TGATCA	2 cut(s)	1158, 1797
BcnI	CCSGG	4 cut(s)	272, 559, 800, 801
BcoDI	GTCTC	4 cut(s)	433, 940, 1563, 1613
BfaI	CTAG	3 cut(s)	285, 1268, 1899
BfoI	RGCGCY	3 cut(s)	1267, 1628, 1882
BfuI	GTATCC	2 cut(s)	1077, 2029
BglII	AGATCT	1 cut(s)	1200
BlpI	GCTNAGC	1 cut(s)	1233
Bme1390I	CCNGG	8 cut(s)	272, 422, 559, 725, 800, 801, 1109, 1711
Bme18I	GGWCC	3 cut(s)	634, 1707, 2119
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	2 cut(s)	28, 799
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	4 cut(s)	4, 634, 1707, 2119
BmiI	GGNNCC	5 cut(s)	6, 295, 556, 621, 635
BmrFI	CCNGG	8 cut(s)	272, 422, 559, 725, 800, 801, 1109, 1711
BmrI	ACTGGG	1 cut(s)	2089
BmsI	GCATC	5 cut(s)	1261, 1433, 1760, 1769, 2103
BmuI	ACTGGG	1 cut(s)	2089
BpiI	GAAGAC	4 cut(s)	69, 345, 569, 2072
BpmI	CTGGAG	1 cut(s)	443
Bpu10I	CCTNAGC	1 cut(s)	1517
Bpu1102I	GCTNAGC	1 cut(s)	1233
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	787, 1239
BpuMI	CCSGG	4 cut(s)	272, 559, 800, 801
BsaAI	YACGTR	1 cut(s)	1385
BsaBI	GATNNNNATC	1 cut(s)	298
BsaI	GGTCTC	2 cut(s)	433, 1563
BsaJI	CCNNGG	4 cut(s)	152, 798, 799, 1068
BsaWI	WCCGGW	2 cut(s)	290, 1763
Bsc4I	CCNNNNNNNGG	9 cut(s)	271, 450, 451, 522, 616, 1050, 1191, 1888, 2100
Bse1I	ACTGG	7 cut(s)	516, 556, 594, 666, 1055, 2044, 2095
Bse3DI	GCAATG	1 cut(s)	2037
Bse8I	GATNNNNATC	1 cut(s)	298
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	4 cut(s)	422, 725, 1109, 1711
BseDI	CCNNGG	4 cut(s)	152, 798, 799, 1068
BseGI	GGATG	4 cut(s)	853, 1040, 1448, 1760
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	9 cut(s)	271, 450, 451, 522, 616, 1050, 1191, 1888, 2100
BseMI	GCAATG	1 cut(s)	2037
BseMII	CTCAG	5 cut(s)	84, 354, 1224, 1508, 1574
BseNI	ACTGG	7 cut(s)	516, 556, 594, 666, 1055, 2044, 2095
BseRI	GAGGAG	2 cut(s)	1085, 1534
BseSI	GKGCMC	1 cut(s)	1136
BseXI	GCAGC	8 cut(s)	509, 556, 773, 909, 1273, 1315, 1907, 2030
BsgI	GTGCAG	1 cut(s)	1280
Bsh1236I	CGCG	3 cut(s)	130, 1046, 1870
BshFI	GGCC	5 cut(s)	5, 515, 738, 1054, 1184
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	4 cut(s)	136, 209, 429, 1136
BsiHKCI	CYCGRG	2 cut(s)	28, 799
BsiSI	CCGG	6 cut(s)	202, 272, 291, 558, 800, 1764
BslFI	GGGAC	4 cut(s)	170, 242, 816, 1186
BslI	CCNNNNNNNGG	9 cut(s)	271, 450, 451, 522, 616, 1050, 1191, 1888, 2100
BsmAI	GTCTC	4 cut(s)	433, 940, 1563, 1613
BsmFI	GGGAC	4 cut(s)	170, 242, 816, 1186
BsmI	GAATGC	1 cut(s)	504
BsnI	GGCC	5 cut(s)	5, 515, 738, 1054, 1184
Bso31I	GGTCTC	2 cut(s)	433, 1563
BsoBI	CYCGRG	2 cut(s)	28, 799
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	4 cut(s)	136, 209, 429, 1136
Bsp13I	TCCGGA	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	1233
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	5 cut(s)	5, 515, 738, 1054, 1184
BspCNI	CTCAG	5 cut(s)	83, 355, 1225, 1509, 1573
BspEI	TCCGGA	1 cut(s)	290
BspFNI	CGCG	3 cut(s)	130, 1046, 1870
BspLI	GGNNCC	5 cut(s)	6, 295, 556, 621, 635
BspPI	GGATC	4 cut(s)	288, 301, 765, 2163
BspQI	GCTCTTC	1 cut(s)	1627
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	2 cut(s)	433, 1563
BsrBI	CCGCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	2037
BsrI	ACTGG	7 cut(s)	516, 556, 594, 666, 1055, 2044, 2095
BssECI	CCNNGG	4 cut(s)	152, 798, 799, 1068
BssSI	CACGAG	1 cut(s)	1332
BssT1I	CCWWGG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	1332
Bst2UI	CCWGG	4 cut(s)	422, 725, 1109, 1711
Bst4CI	ACNGT	3 cut(s)	181, 1363, 1542
Bst6I	CTCTTC	3 cut(s)	1602, 1611, 1627
BstBAI	YACGTR	1 cut(s)	1385
BstBI	TTCGAA	1 cut(s)	21
BstDEI	CTNAG	9 cut(s)	70, 363, 1233, 1517, 1551, 1560, 1628, 1755, 1956
BstDSI	CCRYGG	1 cut(s)	152
BstEII	GGTNACC	1 cut(s)	1991
BstF5I	GGATG	4 cut(s)	853, 1040, 1448, 1760
BstFNI	CGCG	3 cut(s)	130, 1046, 1870
BstH2I	RGCGCY	3 cut(s)	1267, 1628, 1882
BstHHI	GCGC	4 cut(s)	1266, 1448, 1627, 1881
BstMAI	GTCTC	4 cut(s)	433, 940, 1563, 1613
BstMWI	GCNNNNNNNGC	8 cut(s)	359, 575, 1502, 1757, 1811, 1876, 2015, 2027
BstNI	CCWGG	4 cut(s)	422, 725, 1109, 1711
BstNSI	RCATGY	1 cut(s)	1380
BstPI	GGTNACC	1 cut(s)	1991
BstSCI	CCNGG	8 cut(s)	270, 420, 557, 723, 798, 799, 1107, 1709
BstSLI	GKGCMC	1 cut(s)	1136
BstUI	CGCG	3 cut(s)	130, 1046, 1870
BstV1I	GCAGC	8 cut(s)	509, 556, 773, 909, 1273, 1315, 1907, 2030
BstV2I	GAAGAC	4 cut(s)	69, 345, 569, 2072
BstX2I	RGATCY	3 cut(s)	293, 770, 1200
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	3 cut(s)	293, 770, 1200
BsuI	GTATCC	2 cut(s)	1077, 2029
BsuRI	GGCC	5 cut(s)	5, 515, 738, 1054, 1184
BtgI	CCRYGG	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	853, 1040, 1448, 1760
BtsIMutI	CAGTG	5 cut(s)	509, 587, 1062, 1174, 1807
CaiI	CAGNNNCTG	2 cut(s)	1469, 2122
CfoI	GCGC	4 cut(s)	1266, 1448, 1627, 1881
Cfr13I	GGNCC	4 cut(s)	4, 634, 1707, 2119
Cfr9I	CCCGGG	1 cut(s)	799
CseI	GACGC	3 cut(s)	102, 287, 813
Csp6I	GTAC	1 cut(s)	2218
CspCI	CAANNNNNGTGG	2 cut(s)	498, 533
CviAII	CATG	6 cut(s)	153, 407, 775, 955, 1241, 1377
CviQI	GTAC	1 cut(s)	2218
DdeI	CTNAG	9 cut(s)	70, 363, 1233, 1517, 1551, 1560, 1628, 1755, 1956
DraI	TTTAAA	1 cut(s)	2203
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	1052
Eam1104I	CTCTTC	3 cut(s)	1602, 1611, 1627
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EarI	CTCTTC	3 cut(s)	1602, 1611, 1627
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	2 cut(s)	433, 1563
Eco32I	GATATC	2 cut(s)	712, 784
Eco47I	GGWCC	3 cut(s)	634, 1707, 2119
Eco47III	AGCGCT	1 cut(s)	1626
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	999, 1217
Eco72I	CACGTG	1 cut(s)	1385
Eco88I	CYCGRG	2 cut(s)	28, 799
Eco91I	GGTNACC	1 cut(s)	1991
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	3 cut(s)	634, 1707, 2119
EcoO65I	GGTNACC	1 cut(s)	1991
EcoRI	GAATTC	2 cut(s)	412, 2194
EcoRII	CCWGG	4 cut(s)	420, 723, 1107, 1709
EcoRV	GATATC	2 cut(s)	712, 784
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	2 cut(s)	1276, 1378
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	6 cut(s)	156, 410, 778, 958, 1244, 1380
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 1289, 1321
FaqI	GGGAC	4 cut(s)	170, 242, 816, 1186
FatI	CATG	6 cut(s)	152, 406, 774, 954, 1240, 1376
FauI	CCCGC	4 cut(s)	206, 248, 267, 609
FbaI	TGATCA	2 cut(s)	1158, 1797
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	4 cut(s)	860, 1027, 1455, 1747
FriOI	GRGCYC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	285, 1268, 1899
GlaI	GCGC	4 cut(s)	1265, 1447, 1626, 1880
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	3 cut(s)	1267, 1628, 1882
HaeIII	GGCC	5 cut(s)	5, 515, 738, 1054, 1184
HapII	CCGG	6 cut(s)	202, 272, 291, 558, 800, 1764
HgaI	GACGC	3 cut(s)	102, 287, 813
HhaI	GCGC	4 cut(s)	1266, 1448, 1627, 1881
Hin1II	CATG	6 cut(s)	156, 410, 778, 958, 1244, 1380
Hin6I	GCGC	4 cut(s)	1264, 1446, 1625, 1879
HinP1I	GCGC	4 cut(s)	1264, 1446, 1625, 1879
HincII	GTYRAC	3 cut(s)	220, 1303, 1984
HindII	GTYRAC	3 cut(s)	220, 1303, 1984
HinfI	GANTC	4 cut(s)	299, 646, 1522, 2140
HpaII	CCGG	6 cut(s)	202, 272, 291, 558, 800, 1764
HphI	GGTGA	3 cut(s)	1003, 1778, 1807
Hpy166II	GTNNAC	6 cut(s)	220, 1100, 1134, 1303, 1382, 1984
Hpy8I	GTNNAC	6 cut(s)	220, 1100, 1134, 1303, 1382, 1984
Hpy99I	CGWCG	8 cut(s)	185, 221, 224, 281, 403, 791, 1092, 2001
HpyAV	CCTTC	5 cut(s)	1729, 1741, 1934, 2008, 2050
HpyCH4III	ACNGT	3 cut(s)	181, 1363, 1542
HpyCH4IV	ACGT	3 cut(s)	398, 1090, 1384
HpyF10VI	GCNNNNNNNGC	8 cut(s)	359, 575, 1502, 1757, 1811, 1876, 2015, 2027
HpyF3I	CTNAG	9 cut(s)	70, 363, 1233, 1517, 1551, 1560, 1628, 1755, 1956
HpySE526I	ACGT	3 cut(s)	398, 1090, 1384
Hsp92II	CATG	6 cut(s)	156, 410, 778, 958, 1244, 1380
HspAI	GCGC	4 cut(s)	1264, 1446, 1625, 1879
Kpn2I	TCCGGA	1 cut(s)	290
Ksp22I	TGATCA	2 cut(s)	1158, 1797
LguI	GCTCTTC	1 cut(s)	1627
LmnI	GCTCC	4 cut(s)	204, 267, 293, 424
Lsp1109I	GCAGC	8 cut(s)	509, 556, 773, 909, 1273, 1315, 1907, 2030
LweI	GCATC	5 cut(s)	1261, 1433, 1760, 1769, 2103
MaeI	CTAG	3 cut(s)	285, 1268, 1899
MaeII	ACGT	3 cut(s)	398, 1090, 1384
MaeIII	GTNAC	6 cut(s)	579, 1057, 1450, 1459, 1717, 1991
MbiI	CCGCTC	1 cut(s)	262
MflI	RGATCY	3 cut(s)	293, 770, 1200
MhlI	GDGCHC	4 cut(s)	136, 209, 429, 1136
MlyI	GAGTC	3 cut(s)	640, 1531, 2149
MmeI	TCCRAC	2 cut(s)	712, 1890
Mph1103I	ATGCAT	2 cut(s)	1276, 1378
MroI	TCCGGA	1 cut(s)	290
MroXI	GAANNNNTTC	2 cut(s)	416, 1116
MseI	TTAA	3 cut(s)	477, 1484, 2202
MslI	CAYNNNNRTG	1 cut(s)	1680
MspA1I	CMGCKG	2 cut(s)	1034, 1232
MspI	CCGG	6 cut(s)	202, 272, 291, 558, 800, 1764
MspR9I	CCNGG	8 cut(s)	272, 422, 559, 725, 800, 801, 1109, 1711
Mva1269I	GAATGC	1 cut(s)	504
MvaI	CCWGG	4 cut(s)	422, 725, 1109, 1711
MvnI	CGCG	3 cut(s)	130, 1046, 1870
MwoI	GCNNNNNNNGC	8 cut(s)	359, 575, 1502, 1757, 1811, 1876, 2015, 2027
NciI	CCSGG	4 cut(s)	272, 559, 800, 801
NcoI	CCATGG	1 cut(s)	152
NlaIII	CATG	6 cut(s)	156, 410, 778, 958, 1244, 1380
NlaIV	GGNNCC	5 cut(s)	6, 295, 556, 621, 635
NmuCI	GTSAC	3 cut(s)	1057, 1459, 1717
NsiI	ATGCAT	2 cut(s)	1276, 1378
NspI	RCATGY	1 cut(s)	1380
NspV	TTCGAA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	1627
PcsI	WCGNNNNNNNCGW	3 cut(s)	407, 1087, 1093
PctI	GAATGC	1 cut(s)	504
PdmI	GAANNNNTTC	2 cut(s)	416, 1116
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	2 cut(s)	420, 557
PleI	GAGTC	3 cut(s)	640, 1530, 2148
PmaCI	CACGTG	1 cut(s)	1385
PmlI	CACGTG	1 cut(s)	1385
PpsI	GAGTC	3 cut(s)	640, 1530, 2148
Ppu21I	YACGTR	1 cut(s)	1385
PpuMI	RGGWCCY	3 cut(s)	634, 1707, 2119
PsiI	TTATAA	2 cut(s)	321, 1367
Psp124BI	GAGCTC	1 cut(s)	429
Psp5II	RGGWCCY	3 cut(s)	634, 1707, 2119
Psp6I	CCWGG	4 cut(s)	420, 723, 1107, 1709
PspCI	CACGTG	1 cut(s)	1385
PspEI	GGTNACC	1 cut(s)	1991
PspGI	CCWGG	4 cut(s)	420, 723, 1107, 1709
PspN4I	GGNNCC	5 cut(s)	6, 295, 556, 621, 635
PspPI	GGNCC	4 cut(s)	4, 634, 1707, 2119
PspPPI	RGGWCCY	3 cut(s)	634, 1707, 2119
PstNI	CAGNNNCTG	2 cut(s)	1469, 2122
PsuI	RGATCY	3 cut(s)	293, 770, 1200
PvuII	CAGCTG	1 cut(s)	1034
RsaI	GTAC	1 cut(s)	2219
RsaNI	GTAC	1 cut(s)	2218
RseI	CAYNNNNRTG	1 cut(s)	1680
SacI	GAGCTC	1 cut(s)	429
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	1627
SaqAI	TTAA	3 cut(s)	477, 1484, 2202
Sau96I	GGNCC	4 cut(s)	4, 634, 1707, 2119
SchI	GAGTC	3 cut(s)	640, 1531, 2149
ScrFI	CCNGG	8 cut(s)	272, 422, 559, 725, 800, 801, 1109, 1711
SduI	GDGCHC	4 cut(s)	136, 209, 429, 1136
SfaNI	GCATC	5 cut(s)	1261, 1433, 1760, 1769, 2103
SfuI	TTCGAA	1 cut(s)	21
SgrDI	CGTCGACG	1 cut(s)	218
SinI	GGWCC	3 cut(s)	634, 1707, 2119
SmaI	CCCGGG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	1680
SmlI	CTYRAG	2 cut(s)	766, 1254
SmoI	CTYRAG	2 cut(s)	766, 1254
SseBI	AGGCCT	1 cut(s)	738
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	3 cut(s)	285, 1268, 1899
SstI	GAGCTC	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	8 cut(s)	270, 420, 557, 723, 798, 799, 1107, 1709
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	181, 1363, 1542
TaiI	ACGT	3 cut(s)	401, 1093, 1387
TaqII	GACCGA	1 cut(s)	1488
TauI	GCSGC	4 cut(s)	362, 1187, 1232, 1870
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	3 cut(s)	477, 1484, 2202
Tru9I	TTAA	3 cut(s)	477, 1484, 2202
TscAI	CASTG	5 cut(s)	516, 594, 1062, 1174, 1807
TseFI	GTSAC	3 cut(s)	1057, 1459, 1717
TseI	GCWGC	8 cut(s)	497, 569, 761, 922, 1261, 1328, 1895, 2018
Tsp45I	GTSAC	3 cut(s)	1057, 1459, 1717
TspGWI	ACGGA	3 cut(s)	90, 205, 244
TspMI	CCCGGG	1 cut(s)	799
TspRI	CASTG	5 cut(s)	516, 594, 1062, 1174, 1807
VneI	GTGCAC	1 cut(s)	1132
VpaK11BI	GGWCC	3 cut(s)	634, 1707, 2119
XapI	RAATTY	8 cut(s)	412, 826, 912, 1663, 1686, 1861, 1885, 2194
XceI	RCATGY	1 cut(s)	1380
XmaI	CCCGGG	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	416, 1116
XspI	CTAG	3 cut(s)	285, 1268, 1899
Zsp2I	ATGCAT	2 cut(s)	1276, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.