Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003721.1

Orthogroup ID

OG0007882

Physical Location & Seq

Genomic Coordinates Forward (+)

3309 .. 3719

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003721.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggccccgtctttcgtgttcgaacccccgagcgatgaagaatattccgaagcagaggaagaagactactcagacgaagaagaagaagaacaagaggaacaagaagcgtctgtaaaaccctcgcgtgctcgcacttctcaatccccatgggacttcgcttcctactccgaaaccgtcgccgaagaacacgcccgccggagcaccacctccgtcgacgacaaaatctccaaagcccgccagcaactacccgtcccgctccccgacccggacgacgcttctagctccggatccgaatccgaatccgatagacaagtaacttcctcaaaccctaacaatctgccatcttgccatcaattcaattcaataatcacatgtcttatatgttgtgttgattattcaggaagattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

4.11

Isoelectric Point (pI)

86.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16630
fragaria_vesca	FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260 FvH4_2g38260
malus_domestica	MD01G1061100.v1.1 MD15G1442700.v1.1
prunus_persica	Prupe.1G363600_v2.0.a1 Prupe.3G157600_v2.0.a1
pyrus_communis	pycom15g39060
rosa_chinensis	RchiOBHm_Chr6g0303111
rosa_laevigata	RLG00000011107
rosa_multiflora	Rmu_co8350977.1_g000001 Rmu_sc0003721.1_g000002 Rmu_sc0008911.1_g000005
rosa_roxburghii	Rroxscaffold_7G00165010
rosa_rugosa	Rorug06G0319200
rosa_samantha	Rh6AG433100 Rh6BG469600 Rh6CG445400 Rh6DG432200
rosa_wichuraiana	Rw6G037540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	409
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	124
AccIII	TCCGGA	1 cut(s)	284
AciI	CCGC	3 cut(s)	193, 235, 254
AclWI	GGATC	2 cut(s)	282, 295
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	358, 363
AluBI	AGCT	1 cut(s)	282
AluI	AGCT	1 cut(s)	282
Alw21I	GWGCWC	2 cut(s)	130, 203
AlwI	GGATC	2 cut(s)	282, 295
Ama87I	CYCGRG	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	284
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	130, 203
BccI	CCATC	2 cut(s)	349, 357
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 289
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	292
BseAI	TCCGGA	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	130, 203
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	196, 266, 285
BslFI	GGGAC	2 cut(s)	164, 236
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmFI	GGGAC	2 cut(s)	164, 236
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	130, 203
Bsp13I	TCCGGA	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	287
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	3 cut(s)	193, 235, 254
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	83
BspEI	TCCGGA	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	6, 289
BspPI	GGATC	2 cut(s)	282, 295
BspT104I	TTCGAA	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	5 cut(s)	126, 130, 193, 235, 239
BstDEI	CTNAG	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	48
Cac8I	GCNNGC	5 cut(s)	126, 130, 193, 235, 239
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	96, 281
CviAII	CATG	2 cut(s)	147, 372
CviJI	RGCY	3 cut(s)	5, 233, 282
CviKI_1	RGCY	3 cut(s)	5, 233, 282
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	2 cut(s)	150, 375
FaiI	YATR	5 cut(s)	148, 373, 380, 382, 409
FaqI	GGGAC	2 cut(s)	164, 236
FatI	CATG	2 cut(s)	146, 371
FauI	CCCGC	3 cut(s)	200, 242, 261
FblI	GTMKAC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	196, 266, 285
HgaI	GACGC	2 cut(s)	96, 281
Hin1II	CATG	2 cut(s)	150, 375
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	293, 299
HpaII	CCGG	3 cut(s)	196, 266, 285
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	49, 73, 169, 292, 298, 304
Hpy188III	TCNNGA	2 cut(s)	285, 399
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	179, 215, 218, 275
HpyCH4III	ACNGT	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	150, 375
Kpn2I	TCCGGA	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	3 cut(s)	198, 261, 287
LpnPI	CCDG	5 cut(s)	209, 251, 279, 298, 384
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	289
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	1 cut(s)	287
MboII	GAAGA	8 cut(s)	50, 71, 74, 89, 92, 95, 98, 194
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	130, 203
MluCI	AATT	2 cut(s)	353, 358
MnlI	CCTC	5 cut(s)	49, 88, 130, 217, 331
MroI	TCCGGA	1 cut(s)	284
MspI	CCGG	3 cut(s)	196, 266, 285
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	124
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	150, 375
NlaIV	GGNNCC	2 cut(s)	6, 289
NspI	RCATGY	1 cut(s)	375
NspV	TTCGAA	1 cut(s)	21
PciI	ACATGT	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	293, 299
PscI	ACATGT	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	6, 289
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	287
SalI	GTCGAC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	130, 203
SetI	ASST	2 cut(s)	209, 284
SfuI	TTCGAA	1 cut(s)	21
SgrDI	CGTCGACG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	353, 358
SsiI	CCGC	3 cut(s)	193, 235, 254
SspI	AATATT	1 cut(s)	44
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	21, 213
TasI	AATT	2 cut(s)	353, 358
TfiI	GAWTC	2 cut(s)	293, 299
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.