MD01G1178300.v1.1
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
27858427 .. 27860114
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1178300.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGCAGTTGGGTTAGCAATAGCAGGCGAAGCTGGGCAATACAATGGCAGGATGACGCCGTTTGTCATCCTCTCTTGCATGATGGCAGCCATAGGAGGTGTAATTTTCGGCTACGACATTGGAATTTCAGGCGGCGTGACATCAATGGAGCCGTTTCTTAAAAAATTCTTCCCTGAAGTAAACACTAAGATGAAATCGGACACCAAAATCAGCAACTACTGTAAATTTGACAGTGAACTGTTGACCTCCTTCACATCCTCACTCTACATAGCTGGTCTTGTGGCTTCCCTTTTTGCCAGTTTGGTCACAAGGGCTTACGGCCGCAAGCCTTCAATCCTTGCCGGTGGAGCTGCATTCCTTGCCGGCTCAGCTCTAAATGGCGCAGCTATGAACATCTACATGCTCATCCTCGGCCGCTTATTGCTTGGAGTTGGTATTGGTTTTGGAAATCAGGCTGTTCCATTGTACCTTTCGGAAATGGCACCACCAAAATACAGAGGAGCAATTAACAATGGCTTCCAATTTAGCGTCGGCATTGGCGTATTATCAGCTAACCTCATCAACTACGGCTCTGAGAAGATCAAAGGCGGTTGGGGGTGGCGAATCTCCCTAGCCATGGCTGCAGTCCCTGCCTCAATGCTAACACTGGGCGCATTTTTCCTTCCCGAAACACCTAACAGCCTAATCCAGCGTAGCACGGATCACCAAACAGCCAAGAAAATGCTACAACGTATCAGAGGTGTCGATGATGTCCAAGCAGAACTCGATGATCTGATCAAGGCAAACAACATATCGAAAAACATCAAACACCCTTTCAAGAAAATCCTGGAGAGAAAGTATAGGCCTCAGCTTGTGATGGCAATAGCCATACCATTTTTTCAGCAAGTGACAGGGATTAATGTCATATCCTTTTATTCTGCCGTACTTTTTCGAACAATTGGGTTGGGAGAAAGCGCTTCACTCTTGTCCGTTGTCCTGACTGGAGTGGTTGGTACAAGCTCAACATTCGTATCTATGCTTATCGTAGACAAATTTGGGCGAAGAGTGTTGTTTTTAGCCGGTGGGATTCAAATGTTGGTGTCACAAATTATGGTGGGAGGTGTAATGGCAGCTCAGCTTGGTGATCGCGGCGGAGTGAGCAAAGGATATGCCTGTTTGGTGCTGGTTTTGATATGCATTTATGTAGCGGGATTCGGGTGGTCATGGGGGCCGCTCGGATGGTTGGTTCCGAGTGAGGTTTTCCCGTTGGAAATTCGATCAGCGGGACAAAGTATCAATGTGGTGGTGAACTTTTTGTTCACTTTCATTGTTGCTCAAACTTTTCTAGCAATGCTGTGCCACTTCAAGGCTGGGATTTTCTTCTTTTTCGGGGGTTGGGTGGCGGTGATGACGGTGTTTGTGTACTTGTTTTTGCCGGAGACGAAGAATGTGCCGATTGAGAAGATGGAGAGTGTGTGGCAGGAGCACTGGTTTTGGAGGAGGATTGTGGGGGACTCTAGCAAGGACACCAAGATGGAAGCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

55.12

Weight (kDa)

9.49

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 26 - 486 1.4e-119 Sugar (and other) transporter
MFS_1 PF07690 76 - 436 4.6e-21 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 1 cut(s) 1128
AclWI GGATC 1 cut(s) 708
AcoI YGGCCR 2 cut(s) 319, 412
AcsI RAATTY 5 cut(s) 123, 164, 224, 1031, 1251
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 4 cut(s) 467, 924, 994, 1403
AfeI AGCGCT 1 cut(s) 955
AfiI CCNNNNNNNGG 2 cut(s) 616, 1345
AgsI TTSAA 4 cut(s) 333, 817, 1070, 1345
AjnI CCWGG 1 cut(s) 825
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
Alw21I GWGCWC 1 cut(s) 1467
Alw26I GTCTC 1 cut(s) 1412
AlwI GGATC 1 cut(s) 708
AlwNI CAGNNNCTG 1 cut(s) 629
Aor51HI AGCGCT 1 cut(s) 955
AoxI GGCC 4 cut(s) 319, 412, 842, 1208
ApeKI GCWGC 5 cut(s) 86, 350, 383, 620, 1109
ApoI RAATTY 5 cut(s) 123, 164, 224, 1031, 1251
AseI ATTAAT 1 cut(s) 897
AspLEI GCGC 3 cut(s) 383, 653, 956
AspS9I GGNCC 1 cut(s) 1208
AsuHPI GGTGA 4 cut(s) 695, 1133, 1297, 1396
AsuII TTCGAA 1 cut(s) 931
BaeI ACNNNNGTAYC 2 cut(s) 993, 1026
BanI GGYRCC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 1467
BbvCI CCTCAGC 1 cut(s) 846
BbvI GCAGC 5 cut(s) 98, 337, 395, 607, 1121
BccI CCATC 5 cut(s) 76, 850, 1212, 1438, 1507
BceAI ACGGC 5 cut(s) 43, 136, 334, 583, 905
BcgI CGANNNNNNTGC 2 cut(s) 1411, 1445
BciT130I CCWGG 1 cut(s) 827
BclI TGATCA 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 1412
BfaI CTAG 3 cut(s) 611, 1325, 1497
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 957
BlpI GCTNAGC 2 cut(s) 367, 1113
Bme1390I CCNGG 1 cut(s) 827
BmgT120I GGNCC 1 cut(s) 1208
BmiI GGNNCC 4 cut(s) 150, 483, 1209, 1227
BmrFI CCNGG 1 cut(s) 827
BmrI ACTGGG 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 656
BpmI CTGGAG 2 cut(s) 848, 1002
Bpu10I CCTNAGC 1 cut(s) 846
Bpu1102I GCTNAGC 2 cut(s) 367, 1113
Bpu14I TTCGAA 1 cut(s) 931
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 409, 615
BsaXI ACNNNNNCTCC 6 cut(s) 821, 851, 1439, 1454, 1469, 1484
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 1345
Bse118I RCCGGY 3 cut(s) 341, 362, 1058
Bse1I ACTGG 4 cut(s) 297, 651, 985, 1472
Bse3DI GCAATG 1 cut(s) 1335
BseBI CCWGG 1 cut(s) 827
BseDI CCNNGG 2 cut(s) 409, 615
BseGI GGATG 5 cut(s) 57, 66, 254, 405, 1223
BseLI CCNNNNNNNGG 2 cut(s) 616, 1345
BseMI GCAATG 1 cut(s) 1335
BseMII CTCAG 4 cut(s) 381, 564, 860, 1127
BseNI ACTGG 4 cut(s) 297, 651, 985, 1472
BseRI GAGGAG 2 cut(s) 513, 1492
BseX3I CGGCCG 2 cut(s) 319, 412
BseXI GCAGC 5 cut(s) 98, 337, 395, 607, 1121
BseYI CCCAGC 2 cut(s) 32, 1349
Bsh1236I CGCG 1 cut(s) 1128
Bsh1285I CGRYCG 2 cut(s) 322, 415
BshFI GGCC 4 cut(s) 321, 414, 844, 1210
BshNI GGYRCC 1 cut(s) 481
BsiEI CGRYCG 2 cut(s) 322, 415
BsiHKAI GWGCWC 1 cut(s) 1467
BsiSI CCGG 4 cut(s) 342, 363, 1059, 1415
BslFI GGGAC 3 cut(s) 611, 1278, 1505
BslI CCNNNNNNNGG 2 cut(s) 616, 1345
BsmAI GTCTC 1 cut(s) 1412
BsmBI CGTCTC 1 cut(s) 1412
BsmFI GGGAC 3 cut(s) 611, 1278, 1505
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 4 cut(s) 321, 414, 844, 1210
Bsp119I TTCGAA 1 cut(s) 931
Bsp1286I GDGCHC 1 cut(s) 1467
Bsp143I GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
Bsp1720I GCTNAGC 2 cut(s) 367, 1113
Bsp19I CCATGG 1 cut(s) 615
BspANI GGCC 4 cut(s) 321, 414, 844, 1210
BspCNI CTCAG 4 cut(s) 380, 565, 859, 1126
BspFNI CGCG 1 cut(s) 1128
BspLI GGNNCC 4 cut(s) 150, 483, 1209, 1227
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 1 cut(s) 708
BspT104I TTCGAA 1 cut(s) 931
BspT107I GGYRCC 1 cut(s) 481
BsrBI CCGCTC 1 cut(s) 1213
BsrDI GCAATG 1 cut(s) 1335
BsrFI RCCGGY 3 cut(s) 341, 362, 1058
BsrI ACTGG 4 cut(s) 297, 651, 985, 1472
BssAI RCCGGY 3 cut(s) 341, 362, 1058
BssECI CCNNGG 2 cut(s) 409, 615
BssMI GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 4 cut(s) 221, 233, 240, 1393
Bst6I CTCTTC 1 cut(s) 1036
BstACI GRCGYC 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 359, 629
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 3 cut(s) 25, 326, 364
BstDEI CTNAG 5 cut(s) 186, 367, 573, 846, 1113
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 5 cut(s) 57, 66, 254, 405, 1223
BstFNI CGCG 1 cut(s) 1128
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 3 cut(s) 383, 653, 956
BstKTI GATC 6 cut(s) 582, 703, 772, 777, 1126, 1259
BstMAI GTCTC 1 cut(s) 1412
BstMBI GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
BstMCI CGRYCG 2 cut(s) 322, 415
BstMWI GCNNNNNNNGC 7 cut(s) 29, 347, 359, 368, 620, 629, 1137
BstNI CCWGG 1 cut(s) 827
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 825
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 1128
BstV1I GCAGC 5 cut(s) 98, 337, 395, 607, 1121
BstZI CGGCCG 2 cut(s) 319, 412
BsuRI GGCC 4 cut(s) 321, 414, 844, 1210
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 5 cut(s) 57, 66, 254, 405, 1223
BtsIMutI CAGTG 3 cut(s) 238, 644, 1465
Cac8I GCNNGC 3 cut(s) 25, 326, 364
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 3 cut(s) 383, 653, 956
Cfr10I RCCGGY 3 cut(s) 341, 362, 1058
Cfr13I GGNCC 1 cut(s) 1208
CseI GACGC 2 cut(s) 64, 517
Csp6I GTAC 4 cut(s) 466, 923, 993, 1402
CviAII CATG 4 cut(s) 79, 400, 616, 1203
CviQI GTAC 4 cut(s) 466, 923, 993, 1402
DdeI CTNAG 5 cut(s) 186, 367, 573, 846, 1113
DpnI GATC 6 cut(s) 581, 702, 771, 776, 1125, 1258
DpnII GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
EaeI YGGCCR 2 cut(s) 319, 412
EagI CGGCCG 2 cut(s) 319, 412
Eam1104I CTCTTC 1 cut(s) 1036
EarI CTCTTC 1 cut(s) 1036
EciI GGCGGA 1 cut(s) 1146
EclXI CGGCCG 2 cut(s) 319, 412
Eco130I CCWWGG 1 cut(s) 615
Eco147I AGGCCT 1 cut(s) 844
Eco47III AGCGCT 1 cut(s) 955
Eco52I CGGCCG 2 cut(s) 319, 412
Eco57I CTGAAG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 1178
ErhI CCWWGG 1 cut(s) 615
Esp3I CGTCTC 1 cut(s) 1412
FaeI CATG 4 cut(s) 82, 403, 619, 1206
FaqI GGGAC 3 cut(s) 611, 1278, 1505
FatI CATG 4 cut(s) 78, 399, 615, 1202
FauI CCCGC 2 cut(s) 1180, 1255
FbaI TGATCA 1 cut(s) 774
FblI GTMKAC 1 cut(s) 1026
FokI GGATG 5 cut(s) 53, 64, 241, 392, 1230
FspBI CTAG 3 cut(s) 611, 1325, 1497
GlaI GCGC 3 cut(s) 382, 652, 955
GsaI CCCAGC 2 cut(s) 36, 1353
GsuI CTGGAG 2 cut(s) 848, 1002
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 4 cut(s) 321, 414, 844, 1210
HapII CCGG 4 cut(s) 342, 363, 1059, 1415
HgaI GACGC 2 cut(s) 64, 517
HhaI GCGC 3 cut(s) 383, 653, 956
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 4 cut(s) 82, 403, 619, 1206
Hin6I GCGC 3 cut(s) 381, 651, 954
HinP1I GCGC 3 cut(s) 381, 651, 954
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 4 cut(s) 603, 1066, 1191, 1493
HpaII CCGG 4 cut(s) 342, 363, 1059, 1415
HphI GGTGA 4 cut(s) 695, 1133, 1297, 1396
Hpy166II GTNNAC 7 cut(s) 181, 236, 243, 1027, 1288, 1299, 1402
Hpy188I TCNGA 7 cut(s) 199, 475, 574, 737, 774, 1217, 1230
Hpy188III TCNNGA 3 cut(s) 665, 817, 976
Hpy8I GTNNAC 7 cut(s) 181, 236, 243, 1027, 1288, 1299, 1402
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 3 cut(s) 259, 339, 671
HpyCH4III ACNGT 4 cut(s) 221, 233, 240, 1393
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 4 cut(s) 78, 353, 623, 1176
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 347, 359, 368, 620, 629, 1137
HpyF3I CTNAG 5 cut(s) 186, 367, 573, 846, 1113
HpySE526I ACGT 1 cut(s) 730
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 4 cut(s) 82, 403, 619, 1206
HspAI GCGC 3 cut(s) 381, 651, 954
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
LmnI GCTCC 5 cut(s) 148, 347, 500, 1462, 1525
Lsp1109I GCAGC 5 cut(s) 98, 337, 395, 607, 1121
MaeI CTAG 3 cut(s) 611, 1325, 1497
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 4 cut(s) 136, 304, 886, 1080
MalI GATC 6 cut(s) 581, 702, 771, 776, 1125, 1258
MbiI CCGCTC 1 cut(s) 1213
MboI GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
MboII GAAGA 6 cut(s) 160, 589, 1053, 1351, 1435, 1453
MfeI CAATTG 1 cut(s) 936
MhlI GDGCHC 1 cut(s) 1467
MlyI GAGTC 1 cut(s) 1487
MmeI TCCRAC 1 cut(s) 1227
Mph1103I ATGCAT 1 cut(s) 1178
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 3 cut(s) 159, 507, 897
MslI CAYNNNNRTG 3 cut(s) 188, 398, 1511
MspA1I CMGCKG 1 cut(s) 1262
MspI CCGG 4 cut(s) 342, 363, 1059, 1415
MspR9I CCNGG 1 cut(s) 827
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 827
MvnI CGCG 1 cut(s) 1128
MwoI GCNNNNNNNGC 7 cut(s) 29, 347, 359, 368, 620, 629, 1137
NaeI GCCGGC 1 cut(s) 364
NcoI CCATGG 1 cut(s) 615
NdeII GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 4 cut(s) 82, 403, 619, 1206
NlaIV GGNNCC 4 cut(s) 150, 483, 1209, 1227
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 4 cut(s) 136, 304, 886, 1080
NsiI ATGCAT 1 cut(s) 1178
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 931
PceI AGGCCT 1 cut(s) 844
PcsI WCGNNNNNNNCGW 1 cut(s) 537
PctI GAATGC 1 cut(s) 353
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 3 cut(s) 603, 1066, 1191
PfoI TCCNGGA 1 cut(s) 825
PleI GAGTC 1 cut(s) 1487
PpsI GAGTC 1 cut(s) 1487
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 825
PspFI CCCAGC 2 cut(s) 32, 1349
PspGI CCWGG 1 cut(s) 825
PspN4I GGNNCC 4 cut(s) 150, 483, 1209, 1227
PspPI GGNCC 1 cut(s) 1208
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 629
RsaI GTAC 4 cut(s) 467, 924, 994, 1403
RsaNI GTAC 4 cut(s) 466, 923, 993, 1402
RseI CAYNNNNRTG 3 cut(s) 188, 398, 1511
SaqAI TTAA 3 cut(s) 159, 507, 897
Sau3AI GATC 6 cut(s) 579, 700, 769, 774, 1123, 1256
Sau96I GGNCC 1 cut(s) 1208
SchI GAGTC 1 cut(s) 1487
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 1 cut(s) 1467
SfcI CTRYAG 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 931
SmiMI CAYNNNNRTG 3 cut(s) 188, 398, 1511
SseBI AGGCCT 1 cut(s) 844
SspMI CTAG 3 cut(s) 611, 1325, 1497
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 4 cut(s) 221, 233, 240, 1393
TaiI ACGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 744, 765, 794, 931, 1255
TatI WGTACW 1 cut(s) 1401
TauI GCSGC 5 cut(s) 135, 324, 417, 1131, 1213
TfiI GAWTC 3 cut(s) 603, 1066, 1191
Tru1I TTAA 3 cut(s) 159, 507, 897
Tru9I TTAA 3 cut(s) 159, 507, 897
TscAI CASTG 3 cut(s) 238, 651, 1472
TseFI GTSAC 4 cut(s) 136, 304, 886, 1080
TseI GCWGC 5 cut(s) 86, 350, 383, 620, 1109
Tsp45I GTSAC 4 cut(s) 136, 304, 886, 1080
TspDTI ATGAA 3 cut(s) 206, 404, 1294
TspGWI ACGGA 3 cut(s) 713, 958, 1512
TspRI CASTG 3 cut(s) 238, 651, 1472
VspI ATTAAT 1 cut(s) 897
XapI RAATTY 5 cut(s) 123, 164, 224, 1031, 1251
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 1026
XspI CTAG 3 cut(s) 611, 1325, 1497
Zsp2I ATGCAT 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.