Rorug07G0280400
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004085
Physical Location & Seq
Reverse (-)
27100296 .. 27100526
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0280400.1

Sequence Viewer

Length: 231 bp
ATGATGACCTCGGCGAACAAAAATTTGTGCCTGATACCAGCTTTAGGTTCAAGTTTAAGACATTTTGTCTTTGGGCCTGTAAGCAACACATTGTTCTTTTGCAGCTTTCAGTGGGGAAATGAATTCAAATGGTTCGATATTTTCAATGCTAACCGGGATTTTTGCACTAACCGCTTTTGGAGTATCCGAGAGAGTGGCCCATGTTTAAAAAATAAAACCTGCCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

76

Amino Acids

8.82

Weight (kDa)

9.04

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 26 - 72 1.1e-09 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
AciI CCGC 1 cut(s) 172
AcsI RAATTY 2 cut(s) 22, 122
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 51, 127, 145
AhdI GACNNNNNGTC 1 cut(s) 65
AluBI AGCT 2 cut(s) 41, 105
AluI AGCT 2 cut(s) 41, 105
AoxI GGCC 2 cut(s) 74, 196
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 22, 122
AspS9I GGNCC 2 cut(s) 74, 197
AsuC2I CCSGG 1 cut(s) 155
BbvI GCAGC 1 cut(s) 114
BciVI GTATCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 227
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 74, 197
BmrFI CCNGG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 114
BshFI GGCC 2 cut(s) 76, 198
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 2 cut(s) 76, 198
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 76, 198
BspMI ACCTGC 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 76, 198
BtsIMutI CAGTG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 74, 197
CviAII CATG 1 cut(s) 201
CviJI RGCY 4 cut(s) 41, 76, 105, 198
CviKI_1 RGCY 4 cut(s) 41, 76, 105, 198
DraI TTTAAA 1 cut(s) 207
DriI GACNNNNNGTC 1 cut(s) 65
Eam1105I GACNNNNNGTC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 122
FaeI CATG 1 cut(s) 204
FaiI YATR 1 cut(s) 202
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 76, 198
HapII CCGG 1 cut(s) 154
Hin1II CATG 1 cut(s) 204
HpaII CCGG 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 102, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 204
LpnPI CCDG 4 cut(s) 44, 51, 90, 167
Lsp1109I GCAGC 1 cut(s) 114
MluCI AATT 2 cut(s) 22, 122
MnlI CCTC 1 cut(s) 19
MseI TTAA 2 cut(s) 56, 206
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 171
NciI CCSGG 1 cut(s) 155
NlaIII CATG 1 cut(s) 204
PkrI GCNGC 1 cut(s) 104
PspPI GGNCC 2 cut(s) 74, 197
SaqAI TTAA 2 cut(s) 56, 206
SatI GCNGC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 74, 197
ScrFI CCNGG 1 cut(s) 155
SetI ASST 5 cut(s) 11, 43, 49, 107, 221
SgeI CNNG 9 cut(s) 22, 43, 50, 63, 89, 166, 167, 200, 213
Sse9I AATT 2 cut(s) 22, 122
SsiI CCGC 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 153
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 22, 122
Tru1I TTAA 2 cut(s) 56, 206
Tru9I TTAA 2 cut(s) 56, 206
TscAI CASTG 1 cut(s) 116
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 116
XapI RAATTY 2 cut(s) 22, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.