Rroxscaffold_4G00283910
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004085
Physical Location & Seq
Forward (+)
5701882 .. 5703929
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283910.1

Sequence Viewer

Length: 810 bp
ATGCAAATGTTGCAGCGCATCAGAGGCGTCGAAGATGTCCAATTAGAACTTGAAGATCTCATCAAAGCAAACAACATTTCCAAAACCATCCAACACCCTTTTAGGAAGATCCTAGAGAGAAGGTATAGGCCTCAACTTGTAATGGCAATAGCCATCCCATTTTTCCAGCAAGTGACTGGAATCAATGTCATAGCTTTCTATGCCCCTATACTCTTTCGAACAATTGGCTTAGGTGAAAGTGCATCACTTTTGTCTGCTGTCATGACCGGTGTAGTCGGTACAATCTCAACCTTCATATCCATGCTTATAGTGGACAAGTTTGGCAGAAGGGTCTTGTTCATAGTTGGGGGCCTTCAAATGTTGGTGTCACAAATGATGATTGGGGGAGTCATGGCGACTCAACTAGGTGATCATGGTGGAGTGAGCAAAGGGTATGCATATTTGGTACTGGTTTTGATTGGCATATACGTAGCTGGGTTTGGGTGGTCTTGGGGACCTCTAGGATGGTTGGTTCCTAGTGAAATTTTCCCACTGGAGATTAGGTCAGCTGGGCAAAGTATCAATGTGGTGGTGAACTTTTTGTTCACTTTTATTGTTGCCCAAACTTTTCTAGCTATGCTTTGCCACTTCAAGGCTGGGATTTTCTTCTTTTTCGGAGGTTGGGTGATGGTGATGACACTGTTTGTATACTTCTTTTTGCCGGAGACGAAGAATGTGCCGATTGAGAAGATGGAGACAGTGTGGGTGGAGCACTGGTTTTGGAGGAGAATTGTTGGGGAGTTTAGCGAGGACACCAAGAATGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

269

Amino Acids

30.4

Weight (kDa)

8.69

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 3 - 248 7.5e-61 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 687
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 522
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 2 cut(s) 280, 447
AfiI CCNNNNNNNGG 1 cut(s) 631
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 3 cut(s) 53, 356, 631
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 5 cut(s) 194, 473, 548, 614, 806
AluI AGCT 5 cut(s) 194, 473, 548, 614, 806
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 2 cut(s) 698, 728
AlwI GGATC 1 cut(s) 103
AoxI GGCC 2 cut(s) 128, 349
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 522
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 349, 494
AsuHPI GGTGA 5 cut(s) 245, 419, 583, 676, 682
AsuII TTCGAA 1 cut(s) 217
AvaII GGWCC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 1 cut(s) 25
BccI CCATC 5 cut(s) 95, 161, 498, 661, 724
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 698, 728
BfaI CTAG 5 cut(s) 113, 404, 500, 516, 611
BglII AGATCT 1 cut(s) 55
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 349, 494
BmiI GGNNCC 3 cut(s) 350, 495, 513
BmsI GCATC 2 cut(s) 27, 251
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 229
Bpu14I TTCGAA 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 8 cut(s) 527, 557, 648, 678, 725, 740, 755, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 631
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 4 cut(s) 181, 453, 537, 758
BseGI GGATG 3 cut(s) 87, 153, 509
BseLI CCNNNNNNNGG 1 cut(s) 631
BseNI ACTGG 4 cut(s) 181, 453, 537, 758
BseRI GAGGAG 1 cut(s) 778
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 3 cut(s) 473, 548, 635
BshFI GGCC 2 cut(s) 130, 351
BshTI ACCGGT 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 2 cut(s) 267, 701
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 631
BsmAI GTCTC 2 cut(s) 698, 728
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 2 cut(s) 130, 351
Bsp119I TTCGAA 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 3 cut(s) 55, 108, 409
BspANI GGCC 2 cut(s) 130, 351
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 350, 495, 513
BspPI GGATC 1 cut(s) 103
BspT104I TTCGAA 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 4 cut(s) 181, 453, 537, 758
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 3 cut(s) 55, 108, 409
BssNAI GTATAC 1 cut(s) 688
BssNI GRCGYC 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 688
Bst4CI ACNGT 2 cut(s) 681, 739
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 469
BstBI TTCGAA 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 87, 153, 509
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 3 cut(s) 58, 111, 412
BstMAI GTCTC 2 cut(s) 698, 728
BstMBI GATC 3 cut(s) 55, 108, 409
BstMWI GCNNNNNNNGC 3 cut(s) 10, 24, 200
BstSNI TACGTA 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 55, 108
BstYI RGATCY 2 cut(s) 55, 108
BstZ17I GTATAC 1 cut(s) 688
BsuRI GGCC 2 cut(s) 130, 351
BtsCI GGATG 3 cut(s) 87, 153, 509
BtsIMutI CAGTG 4 cut(s) 530, 677, 744, 751
CciI TCATGA 1 cut(s) 261
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 349, 494
CseI GACGC 1 cut(s) 16
Csp6I GTAC 2 cut(s) 279, 446
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 4 cut(s) 262, 301, 391, 413
CviQI GTAC 2 cut(s) 279, 446
DdeI CTNAG 1 cut(s) 229
DpnI GATC 3 cut(s) 57, 110, 411
DpnII GATC 3 cut(s) 55, 108, 409
Eco105I TACGTA 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 494
EcoO109I RGGNCCY 2 cut(s) 349, 494
EcoT22I ATGCAT 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 4 cut(s) 265, 304, 394, 416
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 261, 300, 390, 412
FbaI TGATCA 1 cut(s) 409
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 3 cut(s) 74, 140, 516
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 5 cut(s) 113, 404, 500, 516, 611
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 3 cut(s) 477, 552, 639
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 2 cut(s) 130, 351
HapII CCGG 2 cut(s) 267, 701
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 4 cut(s) 265, 304, 394, 416
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 3 cut(s) 180, 387, 397
HpaII CCGG 2 cut(s) 267, 701
HphI GGTGA 5 cut(s) 245, 419, 583, 676, 682
Hpy166II GTNNAC 4 cut(s) 313, 574, 585, 688
Hpy188I TCNGA 2 cut(s) 23, 656
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 4 cut(s) 313, 574, 585, 688
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 114, 301, 321, 362
HpyCH4III ACNGT 2 cut(s) 681, 739
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 4 cut(s) 4, 13, 242, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 24, 200
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 4 cut(s) 265, 304, 394, 416
HspAI GCGC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 55, 108, 409
LmnI GCTCC 1 cut(s) 748
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 27, 251
MaeI CTAG 5 cut(s) 113, 404, 500, 516, 611
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 172, 366
MalI GATC 3 cut(s) 57, 110, 411
MboI GATC 3 cut(s) 55, 108, 409
MboII GAAGA 6 cut(s) 44, 65, 118, 637, 721, 739
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 2 cut(s) 55, 108
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 4 cut(s) 41, 222, 522, 768
MlyI GAGTC 2 cut(s) 391, 396
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 6 cut(s) 17, 141, 507, 650, 756, 781
Mph1103I ATGCAT 1 cut(s) 439
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 267, 701
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 10, 24, 200
NdeII GATC 3 cut(s) 55, 108, 409
NlaIII CATG 4 cut(s) 265, 304, 394, 416
NlaIV GGNNCC 3 cut(s) 350, 495, 513
NmuCI GTSAC 2 cut(s) 172, 366
NsiI ATGCAT 1 cut(s) 439
NspV TTCGAA 1 cut(s) 217
PagI TCATGA 1 cut(s) 261
PceI AGGCCT 1 cut(s) 130
PfeI GAWTC 1 cut(s) 180
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 391, 395
PpsI GAGTC 2 cut(s) 391, 395
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 494
Psp5II RGGWCCY 1 cut(s) 494
PspFI CCCAGC 3 cut(s) 473, 548, 635
PspN4I GGNNCC 3 cut(s) 350, 495, 513
PspPI GGNCC 2 cut(s) 349, 494
PspPPI RGGWCCY 1 cut(s) 494
PsuI RGATCY 2 cut(s) 55, 108
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 280, 447
RsaNI GTAC 2 cut(s) 279, 446
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 3 cut(s) 55, 108, 409
Sau96I GGNCC 2 cut(s) 349, 494
SchI GAGTC 2 cut(s) 391, 396
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 2 cut(s) 27, 251
SfuI TTCGAA 1 cut(s) 217
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 299
SnaBI TACGTA 1 cut(s) 469
Sse9I AATT 4 cut(s) 41, 222, 522, 768
SseBI AGGCCT 1 cut(s) 130
SspMI CTAG 5 cut(s) 113, 404, 500, 516, 611
StuI AGGCCT 1 cut(s) 130
TaaI ACNGT 2 cut(s) 681, 739
TaiI ACGT 1 cut(s) 471
TaqI TCGA 2 cut(s) 30, 217
TasI AATT 4 cut(s) 41, 222, 522, 768
TfiI GAWTC 1 cut(s) 180
TscAI CASTG 4 cut(s) 537, 684, 744, 758
TseFI GTSAC 2 cut(s) 172, 366
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 172, 366
TspDTI ATGAA 2 cut(s) 283, 328
TspRI CASTG 4 cut(s) 537, 684, 744, 758
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 1 cut(s) 522
XcmI CCANNNNNNNNNTGG 3 cut(s) 173, 307, 632
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 5 cut(s) 113, 404, 500, 516, 611
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.