Rorug07G0280300
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004085
Physical Location & Seq
Forward (+)
27089385 .. 27092398
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0280300.1

Sequence Viewer

Length: 648 bp
ATGAAGACTGAACTAGAGATTTGGAGACGGCCTGTAATTGATTTTTCTACACGCGGAGCCAGAGACTTCGAAATTTTGAAAACTGTTCCTGGCGTTGGATTACCAAAATTTACTTTTACTTTTACTATATACCAAAGTTTCGCAGCAGGAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCGCAGCGGTGGAGGTTTCATCTTCGCCGACGAGTTTTCTGTCCGTACCGGAATTCGCAGTCAATCCTCTCTCTCAGTTTTGGCTGGGTGGACGTAGATACGGGGGGAGAGGGATTGGAGCAAGACCTTATAAGCAAGATCTTCACTTCTTTTTCGTTTCCAGGACCCTCTATCAATATATATCAGCACTTCTGTTCGCCGACATCAGAAACATCCATCAACATCAATACCTATCACGGCCTGGAACTTACTGATTCGGCGAAGCACAAGAGAACGGCTTTGAGTCTGAGTTTATTTGAGGGTCTTTACTTACAGAGGTTGCTCTCTAGTAGAAGGGACTGTGGTGTTCTGATTTCTGCTTTTGATGGATTTGGCGAGAGTGAGGATCGCAGCTTAGTTTTTAGTCGTTGTGTCCTCATGAATTGCATGCAGTTTCTTAGCTCAAAGTCTAGACGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

215

Amino Acids

24.53

Weight (kDa)

9.24

Isoelectric Point (pI)

65.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 54, 193
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 3 cut(s) 72, 107, 238
AfaI GTAC 2 cut(s) 165, 233
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 3 cut(s) 88, 346, 426
AluBI AGCT 3 cut(s) 182, 579, 627
AluI AGCT 3 cut(s) 182, 579, 627
Alw26I GTCTC 2 cut(s) 19, 57
AlwI GGATC 1 cut(s) 579
AoxI GGCC 2 cut(s) 29, 424
ApeKI GCWGC 3 cut(s) 143, 190, 576
ApoI RAATTY 3 cut(s) 72, 107, 238
AspS9I GGNCC 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 155, 202, 588
BccI CCATC 2 cut(s) 410, 545
BceAI ACGGC 3 cut(s) 44, 439, 477
BciT130I CCWGG 3 cut(s) 90, 348, 428
BcoDI GTCTC 2 cut(s) 19, 57
BfaI CTAG 3 cut(s) 14, 513, 636
BglII AGATCT 1 cut(s) 324
BisI GCNGC 3 cut(s) 144, 191, 577
BlsI GCNGC 3 cut(s) 145, 192, 578
Bme1390I CCNGG 3 cut(s) 90, 348, 428
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 58, 352
BmrFI CCNGG 3 cut(s) 90, 348, 428
BpiI GAAGAC 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 95
BseBI CCWGG 3 cut(s) 90, 348, 428
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 274, 464
BseXI GCAGC 3 cut(s) 155, 202, 588
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 2 cut(s) 31, 426
BsiEI CGRYCG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 235
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 19, 57
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 2 cut(s) 31, 426
Bsp119I TTCGAA 1 cut(s) 69
Bsp143I GATC 3 cut(s) 185, 324, 571
BspACI CCGC 2 cut(s) 54, 193
BspANI GGCC 2 cut(s) 31, 426
BspCNI CTCAG 2 cut(s) 273, 465
BspFNI CGCG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 58, 352
BspPI GGATC 1 cut(s) 579
BspT104I TTCGAA 1 cut(s) 69
BssMI GATC 3 cut(s) 185, 324, 571
Bst2UI CCWGG 3 cut(s) 90, 348, 428
Bst4CI ACNGT 2 cut(s) 85, 527
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 614
BstDEI CTNAG 4 cut(s) 260, 473, 580, 623
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 3 cut(s) 188, 327, 574
BstMAI GTCTC 2 cut(s) 19, 57
BstMBI GATC 3 cut(s) 185, 324, 571
BstMCI CGRYCG 1 cut(s) 188
BstNI CCWGG 3 cut(s) 90, 348, 428
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 3 cut(s) 88, 346, 426
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 155, 202, 588
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 2 cut(s) 31, 426
BtsCI GGATG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 614
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 164, 232
CviAII CATG 2 cut(s) 604, 613
CviJI RGCY 9 cut(s) 31, 59, 182, 270, 426, 464, 579, 627, 644
CviKI_1 RGCY 9 cut(s) 31, 59, 182, 270, 426, 464, 579, 627, 644
CviQI GTAC 2 cut(s) 164, 232
DdeI CTNAG 4 cut(s) 260, 473, 580, 623
DpnI GATC 3 cut(s) 187, 326, 573
DpnII GATC 3 cut(s) 185, 324, 571
Eco47I GGWCC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 88, 346, 426
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 2 cut(s) 607, 616
FaiI YATR 7 cut(s) 128, 130, 317, 365, 367, 605, 614
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 603, 612
Fnu4HI GCNGC 3 cut(s) 144, 191, 577
FokI GGATG 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 144, 191, 577
FspBI CTAG 3 cut(s) 14, 513, 636
GluI GCNGC 3 cut(s) 144, 191, 577
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 31, 426
HapII CCGG 1 cut(s) 235
Hin1II CATG 2 cut(s) 607, 616
HinfI GANTC 2 cut(s) 440, 469
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 394, 474, 537
Hpy188III TCNNGA 2 cut(s) 604, 636
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 85, 527
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 612, 616
HpyF3I CTNAG 4 cut(s) 260, 473, 580, 623
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 607, 616
Kzo9I GATC 3 cut(s) 185, 324, 571
LmnI GCTCC 2 cut(s) 56, 304
Lsp1109I GCAGC 3 cut(s) 155, 202, 588
MaeI CTAG 3 cut(s) 14, 513, 636
MaeII ACGT 1 cut(s) 279
MalI GATC 3 cut(s) 187, 326, 573
MboI GATC 3 cut(s) 185, 324, 571
MboII GAAGA 3 cut(s) 16, 200, 319
MflI RGATCY 1 cut(s) 324
MluCI AATT 5 cut(s) 36, 72, 107, 238, 607
MlyI GAGTC 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 9 cut(s) 163, 192, 263, 289, 364, 478, 495, 562, 611
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 3 cut(s) 90, 348, 428
MvaI CCWGG 3 cut(s) 90, 348, 428
MvnI CGCG 1 cut(s) 54
NdeII GATC 3 cut(s) 185, 324, 571
NlaIII CATG 2 cut(s) 607, 616
NlaIV GGNNCC 2 cut(s) 58, 352
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 69
PaeI GCATGC 1 cut(s) 616
PagI TCATGA 1 cut(s) 603
PfeI GAWTC 1 cut(s) 440
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 3 cut(s) 145, 192, 578
Ple19I CGATCG 1 cut(s) 188
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PpuMI RGGWCCY 1 cut(s) 350
PsiI TTATAA 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 350
Psp6I CCWGG 3 cut(s) 88, 346, 426
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 3 cut(s) 88, 346, 426
PspN4I GGNNCC 2 cut(s) 58, 352
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 1 cut(s) 324
PvuI CGATCG 1 cut(s) 188
RsaI GTAC 2 cut(s) 165, 233
RsaNI GTAC 2 cut(s) 164, 232
SatI GCNGC 3 cut(s) 144, 191, 577
Sau3AI GATC 3 cut(s) 185, 324, 571
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 3 cut(s) 90, 348, 428
SetI ASST 9 cut(s) 174, 184, 203, 282, 315, 419, 506, 581, 629
SfuI TTCGAA 1 cut(s) 69
SinI GGWCC 1 cut(s) 350
SphI GCATGC 1 cut(s) 616
Sse9I AATT 5 cut(s) 36, 72, 107, 238, 607
SsiI CCGC 2 cut(s) 54, 193
SspMI CTAG 3 cut(s) 14, 513, 636
StyD4I CCNGG 3 cut(s) 88, 346, 426
TaaI ACNGT 2 cut(s) 85, 527
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 69, 184
TasI AATT 5 cut(s) 36, 72, 107, 238, 607
TfiI GAWTC 1 cut(s) 440
TseI GCWGC 3 cut(s) 143, 190, 576
TspDTI ATGAA 3 cut(s) 17, 194, 620
TspGWI ACGGA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 3 cut(s) 72, 107, 238
XbaI TCTAGA 1 cut(s) 635
XceI RCATGY 1 cut(s) 616
XspI CTAG 3 cut(s) 14, 513, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.