Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004085

Physical Location & Seq

Genomic Coordinates Reverse (-)

53951410 .. 53953240

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCAGCTGGGTTAGTGATAACAAGTGAATACAGGCATTACAATGGCAAGTTGACCCTGATTGTGGTAATATCTTGCATGGTTGCTGCCATGGGAGGTATCATTTTCGGCTATGATATTGGAATTTCAGGTGGAGTGACTTCAATGGAACCATTTCTGAAGAAATTTTTCCCAGAGGTTTACAGAAAGATGAAAGAAGACACGAAAGTCAGCAACTACTGCAAATTTGATAGCCATCTTTTAACCACGTTTACATCCTCTCTCTACATAGCTGGCCTTGTAGCTTCCTTCTTTGCCTCTTCTATAACCGGAGCATTTGGCCGCAAGCCTTCGATCCTGGTAGCTGGTGCCTCATTCCTTGCTGGTTCGGCACTAGGTGGCGCAGCTGTTAACTTGTTCATGCTAATATCTGGTCGCATCTTGCTTGGTATTGGAGTTGGCTTTGGAAACCAGGCAGTCCCACTTTATCTCTCAGAAATGGCACCACCAACATTCAGAGGAGCAATCAACATAGGCTTCCAATTATGTGTTGGCATTGGAGTACTATCAGCTAACCTCATCAACTTTGGCACCGAAAAGATCAGAAGCGGCTGGGGTTGGCGAATCTCCCTAGCCATGGCAGCAGTTCCAGCTGCATTACTAACACTAGGTGCTCTTTTCCTACCAGAAACACCAAACAGCTTAATCCAACGCACAAATGACCACGAAAGGGCCAAGCTGATGCTACAACGTACACGAGGAATGGTGGATGTGCAAGCGGAACTGGATGATCTCATCGAAGCAAGTAACAAATCAAAAACAATCGATCACCCTTTCAGAAAAATTGTACAAAGAAAGTATAGGCCTCAACTTGTTATGGCATTAGCTATACCATTCTTTCAACAGCTGACTGGAATAAACGTCATCTCTTTCTATGCTCCAATCCTCTTTCGGACACTCGGTTTAAGTGAAAGCATGAGTGGTGGGTACTGCAGCACCTTCCTATCAATGCTTATGGTGGACAAACTAGGACGAAGAGCTTTGTTCCAAATAGGGGGTATTCAGATGTTTTTGTCCCAAATCATAGTAGGCAGCATTATGGCAGCTAAGCTTGGTGACGTTGGTGGCTTGAGCAAAGTATATGCATATTTGGTGCTGTTCTTCGTATGTATATATGTAGCTGGGTTTGCGTGGTCATGGGGGCCTTTAGGATGGTTGATTCCGAGTGAAATTTTTCCGTTGGAGATTCGATCAGCTGGACAAAGTATTACAGTGGCAGTGAACTTTCTATTCACTTTTGGATGGGTGATGGTAATGACTGCATTTGTGTACTTCTTGTTGCCTGAGACTACAAATATTCCTATTGAGAAAATGGATGAAGTGTGGGGAGAGCATTGGTTTTGGAAGAGGATTGTGGGTGAAGTGAGGGAGGACATTAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

474

Amino Acids

52.03

Weight (kDa)

9.22

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	26 - 426	5.7e-98	Sugar (and other) transporter
MFS_1	PF07690	76 - 423	4.3e-17	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61520 AT5G61520
fragaria_vesca	FvH4_5g33980 FvH4_7g27100 FvH4_7g27120
malus_domestica	MD01G1178300.v1.1 MD01G1180000.v1.1 MD07G1250500.v1.1
prunus_persica	Prupe.2G274100_v2.0.a1 Prupe.2G274200_v2.0.a1 Prupe.2G274300_v2.0.a1
pyrus_communis	pycom01g18910 pycom07g22350
rosa_chinensis	RchiOBHm_Chr1g0373911 RchiOBHm_Chr7g0233361
rosa_laevigata	RLG00000001275 RLG00000026796
rosa_multiflora	Rmu_sc0002022.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227340 Rroxscaffold_4G00283910
rosa_rugosa	Rorug01G0379700 Rorug07G0280300 Rorug07G0280400
rosa_samantha	Rh1AG389900 Rh1BG354200 Rh1CG367300 Rh1DG384900 Rh7BG409000 Rh7CG455400
rosa_wichuraiana	Rw0G022460 Rw1G034530 Rw7G035880 Rw7G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	3 cut(s)	347, 481, 569
AciI	CCGC	3 cut(s)	322, 588, 758
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	4 cut(s)	123, 164, 224, 1209
AcuI	CTGAAG	1 cut(s)	179
AdeI	CACNNNGTG	2 cut(s)	377, 650
AfaI	GTAC	5 cut(s)	543, 733, 828, 968, 1310
AfiI	CCNNNNNNNGG	4 cut(s)	64, 616, 709, 1033
AgsI	TTSAA	2 cut(s)	144, 881
AjnI	CCWGG	2 cut(s)	336, 450
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	1 cut(s)	1319
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	5 cut(s)	274, 319, 711, 842, 1181
ApeKI	GCWGC	8 cut(s)	5, 86, 383, 620, 632, 972, 1071, 1082
ApoI	RAATTY	4 cut(s)	123, 164, 224, 1209
Asp700I	GAANNNNTTC	3 cut(s)	153, 167, 1212
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	711, 1181
AsuHPI	GGTGA	4 cut(s)	800, 1106, 1297, 1409
BanI	GGYRCC	3 cut(s)	347, 481, 569
BauI	CACGAG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	8 cut(s)	17, 73, 395, 619, 632, 984, 1083, 1094
BccI	CCATC	4 cut(s)	243, 1185, 1275, 1282
BciT130I	CCWGG	2 cut(s)	338, 452
BcoDI	GTCTC	1 cut(s)	1319
BfaI	CTAG	4 cut(s)	374, 611, 647, 1007
BfmI	CTRYAG	1 cut(s)	970
BlpI	GCTNAGC	1 cut(s)	1086
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	338, 452
BmgT120I	GGNCC	2 cut(s)	711, 1181
BmiI	GGNNCC	5 cut(s)	150, 349, 483, 571, 1182
BmrFI	CCNGG	2 cut(s)	338, 452
BmsI	GCATC	2 cut(s)	426, 711
BpiI	GAAGAC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	1129
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	90, 615
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 616, 709, 1033
Bse1I	ACTGG	2 cut(s)	768, 895
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	338, 452
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	90, 615
BseGI	GGATG	6 cut(s)	254, 754, 772, 1196, 1286, 1360
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	4 cut(s)	64, 616, 709, 1033
BseMII	CTCAG	2 cut(s)	486, 1314
BseNI	ACTGG	2 cut(s)	768, 895
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	8 cut(s)	17, 73, 395, 619, 632, 984, 1083, 1094
BseYI	CCCAGC	3 cut(s)	8, 591, 1160
BshFI	GGCC	5 cut(s)	276, 321, 713, 844, 1183
BshNI	GGYRCC	3 cut(s)	347, 481, 569
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	2 cut(s)	443, 1039
BslI	CCNNNNNNNGG	4 cut(s)	64, 616, 709, 1033
BsmAI	GTCTC	1 cut(s)	1319
BsmFI	GGGAC	2 cut(s)	443, 1039
BsnI	GGCC	5 cut(s)	276, 321, 713, 844, 1183
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp1407I	TGTACA	1 cut(s)	826
Bsp143I	GATC	5 cut(s)	333, 579, 769, 805, 1229
Bsp1720I	GCTNAGC	1 cut(s)	1086
Bsp19I	CCATGG	2 cut(s)	90, 615
BspACI	CCGC	3 cut(s)	322, 588, 758
BspANI	GGCC	5 cut(s)	276, 321, 713, 844, 1183
BspCNI	CTCAG	2 cut(s)	485, 1315
BspDI	ATCGAT	1 cut(s)	804
BspLI	GGNNCC	5 cut(s)	150, 349, 483, 571, 1182
BspMAI	CTGCAG	1 cut(s)	974
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	1009
BspT107I	GGYRCC	3 cut(s)	347, 481, 569
BsrGI	TGTACA	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	768, 895
BssECI	CCNNGG	2 cut(s)	90, 615
BssMI	GATC	5 cut(s)	333, 579, 769, 805, 1229
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	90, 615
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	338, 452
Bst4CI	ACNGT	1 cut(s)	1252
Bst6I	CTCTTC	3 cut(s)	304, 1009, 1379
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	826
BstC8I	GCNNGC	3 cut(s)	274, 326, 756
BstDEI	CTNAG	3 cut(s)	472, 1086, 1323
BstDSI	CCRYGG	2 cut(s)	90, 615
BstF5I	GGATG	6 cut(s)	254, 754, 772, 1196, 1286, 1360
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	5 cut(s)	336, 582, 772, 808, 1232
BstMAI	GTCTC	1 cut(s)	1319
BstMBI	GATC	5 cut(s)	333, 579, 769, 805, 1229
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 368, 620, 629, 1166
BstNI	CCWGG	2 cut(s)	338, 452
BstSCI	CCNGG	2 cut(s)	336, 450
BstSFI	CTRYAG	1 cut(s)	970
BstV1I	GCAGC	8 cut(s)	17, 73, 395, 619, 632, 984, 1083, 1094
BstV2I	GAAGAC	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	804
BsuRI	GGCC	5 cut(s)	276, 321, 713, 844, 1183
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	90, 615
BtsCI	GGATG	6 cut(s)	254, 754, 772, 1196, 1286, 1360
BtsI	GCAGTG	1 cut(s)	1263
BtsIMutI	CAGTG	2 cut(s)	1257, 1263
Cac8I	GCNNGC	3 cut(s)	274, 326, 756
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	711, 1181
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	5 cut(s)	542, 732, 827, 967, 1309
CviAII	CATG	6 cut(s)	79, 91, 400, 616, 955, 1176
CviQI	GTAC	5 cut(s)	542, 732, 827, 967, 1309
DdeI	CTNAG	3 cut(s)	472, 1086, 1323
DpnI	GATC	5 cut(s)	335, 581, 771, 807, 1231
DpnII	GATC	5 cut(s)	333, 579, 769, 805, 1229
DraIII	CACNNNGTG	2 cut(s)	377, 650
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	304, 1009, 1379
EarI	CTCTTC	3 cut(s)	304, 1009, 1379
Eco130I	CCWWGG	2 cut(s)	90, 615
Eco147I	AGGCCT	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	1181
EcoRII	CCWGG	2 cut(s)	336, 450
EcoT14I	CCWWGG	2 cut(s)	90, 615
EcoT22I	ATGCAT	1 cut(s)	1126
ErhI	CCWWGG	2 cut(s)	90, 615
FaeI	CATG	6 cut(s)	82, 94, 403, 619, 958, 1179
FaqI	GGGAC	2 cut(s)	443, 1039
FatI	CATG	6 cut(s)	78, 90, 399, 615, 954, 1175
FokI	GGATG	6 cut(s)	241, 761, 779, 1203, 1293, 1367
FspBI	CTAG	4 cut(s)	374, 611, 647, 1007
GlaI	GCGC	1 cut(s)	382
GsaI	CCCAGC	3 cut(s)	12, 595, 1164
HaeIII	GGCC	5 cut(s)	276, 321, 713, 844, 1183
HapII	CCGG	1 cut(s)	309
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	6 cut(s)	82, 94, 403, 619, 958, 1179
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	2 cut(s)	54, 391
HindII	GTYRAC	2 cut(s)	54, 391
HindIII	AAGCTT	1 cut(s)	1088
HinfI	GANTC	3 cut(s)	603, 1198, 1225
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	4 cut(s)	800, 1106, 1297, 1409
Hpy166II	GTNNAC	8 cut(s)	54, 181, 252, 391, 734, 1000, 1261, 1309
Hpy188I	TCNGA	8 cut(s)	159, 475, 497, 584, 818, 933, 1044, 1203
Hpy8I	GTNNAC	8 cut(s)	54, 181, 252, 391, 734, 1000, 1261, 1309
HpyAV	CCTTC	3 cut(s)	298, 339, 988
HpyCH4III	ACNGT	1 cut(s)	1252
HpyCH4IV	ACGT	4 cut(s)	248, 730, 900, 1098
HpyCH4V	TGCA	7 cut(s)	78, 222, 635, 754, 972, 1124, 1301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 368, 620, 629, 1166
HpyF3I	CTNAG	3 cut(s)	472, 1086, 1323
HpySE526I	ACGT	4 cut(s)	248, 730, 900, 1098
Hsp92II	CATG	6 cut(s)	82, 94, 403, 619, 958, 1179
HspAI	GCGC	1 cut(s)	381
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	333, 579, 769, 805, 1229
LguI	GCTCTTC	1 cut(s)	1009
LmnI	GCTCC	3 cut(s)	311, 500, 922
Lsp1109I	GCAGC	8 cut(s)	17, 73, 395, 619, 632, 984, 1083, 1094
LweI	GCATC	2 cut(s)	426, 711
MaeI	CTAG	4 cut(s)	374, 611, 647, 1007
MaeII	ACGT	4 cut(s)	248, 730, 900, 1098
MaeIII	GTNAC	3 cut(s)	136, 785, 1094
MalI	GATC	5 cut(s)	335, 581, 771, 807, 1231
MboI	GATC	5 cut(s)	333, 579, 769, 805, 1229
MboII	GAAGA	6 cut(s)	172, 209, 291, 1026, 1132, 1396
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	6 cut(s)	123, 164, 224, 521, 822, 1209
MmeI	TCCRAC	2 cut(s)	712, 1200
Mph1103I	ATGCAT	1 cut(s)	1126
MroXI	GAANNNNTTC	3 cut(s)	153, 167, 1212
MseI	TTAA	5 cut(s)	242, 390, 683, 944, 1416
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	5 cut(s)	8, 386, 632, 886, 1235
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	338, 452
MvaI	CCWGG	2 cut(s)	338, 452
MwoI	GCNNNNNNNGC	5 cut(s)	219, 368, 620, 629, 1166
NcoI	CCATGG	2 cut(s)	90, 615
NdeII	GATC	5 cut(s)	333, 579, 769, 805, 1229
NlaIII	CATG	6 cut(s)	82, 94, 403, 619, 958, 1179
NlaIV	GGNNCC	5 cut(s)	150, 349, 483, 571, 1182
NmuCI	GTSAC	2 cut(s)	136, 1094
NsiI	ATGCAT	1 cut(s)	1126
PceI	AGGCCT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	1009
PdmI	GAANNNNTTC	3 cut(s)	153, 167, 1212
PfeI	GAWTC	3 cut(s)	603, 1198, 1225
Psp6I	CCWGG	2 cut(s)	336, 450
PspFI	CCCAGC	3 cut(s)	8, 591, 1160
PspGI	CCWGG	2 cut(s)	336, 450
PspN4I	GGNNCC	5 cut(s)	150, 349, 483, 571, 1182
PspPI	GGNCC	2 cut(s)	711, 1181
PstI	CTGCAG	1 cut(s)	974
PvuII	CAGCTG	5 cut(s)	8, 386, 632, 886, 1235
RsaI	GTAC	5 cut(s)	543, 733, 828, 968, 1310
RsaNI	GTAC	5 cut(s)	542, 732, 827, 967, 1309
RseI	CAYNNNNRTG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	1009
SaqAI	TTAA	5 cut(s)	242, 390, 683, 944, 1416
Sau3AI	GATC	5 cut(s)	333, 579, 769, 805, 1229
Sau96I	GGNCC	2 cut(s)	711, 1181
ScaI	AGTACT	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	338, 452
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	2 cut(s)	426, 711
SfcI	CTRYAG	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	1108
SmoI	CTYRAG	1 cut(s)	1108
Sse9I	AATT	6 cut(s)	123, 164, 224, 521, 822, 1209
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	322, 588, 758
SspI	AATATT	1 cut(s)	1336
SspMI	CTAG	4 cut(s)	374, 611, 647, 1007
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	2 cut(s)	336, 450
StyI	CCWWGG	2 cut(s)	90, 615
TaaI	ACNGT	1 cut(s)	1252
TaiI	ACGT	4 cut(s)	251, 733, 903, 1101
TaqI	TCGA	4 cut(s)	332, 777, 804, 1228
TasI	AATT	6 cut(s)	123, 164, 224, 521, 822, 1209
TatI	WGTACW	3 cut(s)	541, 826, 1308
TauI	GCSGC	2 cut(s)	324, 591
TfiI	GAWTC	3 cut(s)	603, 1198, 1225
Tru1I	TTAA	5 cut(s)	242, 390, 683, 944, 1416
Tru9I	TTAA	5 cut(s)	242, 390, 683, 944, 1416
TscAI	CASTG	2 cut(s)	1257, 1263
TseFI	GTSAC	2 cut(s)	136, 1094
TseI	GCWGC	8 cut(s)	5, 86, 383, 620, 632, 972, 1071, 1082
Tsp45I	GTSAC	2 cut(s)	136, 1094
TspDTI	ATGAA	3 cut(s)	206, 388, 1371
TspGWI	ACGGA	1 cut(s)	1206
TspRI	CASTG	2 cut(s)	1257, 1263
XapI	RAATTY	4 cut(s)	123, 164, 224, 1209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmnI	GAANNNNTTC	3 cut(s)	153, 167, 1212
XspI	CTAG	4 cut(s)	374, 611, 647, 1007
ZrmI	AGTACT	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.