Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004085

Physical Location & Seq

Genomic Coordinates Reverse (-)

27957636 .. 27958876

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1180000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAACATCTACATGCTCATCCTCGGCCGCTTATTGCTTGGAGTTGGTATTGGTTTTGGAAATCAGGCTGTTCCATTGTACCTTTCGGAAATGGCACCACCAAAATACAGAGGAGCAATTAACAATGGCTTCCAATTTAGCGTCGGCATTGGCGTATTATCAGCTAACCTCATCAACTACGGCTCTGAGAAGATCAAAGGCGGTTGGGGGTGGCGAATCTCCCTAGCCATGGCTGCAGTCCCTGCCTCAATGCTAACACTGGGAGCATTTTTCCTTCCCAAAACACCTAACAGCCTAATCCAGCATAGCGCGGATCACCATACAGCCAAGCAAATGCTACAACGTATCAGAGGTGTCAATGATGTCCAAGCAGAACTCGATGATCTGATCAAGGCAAACAACATATGGAAAAACATTAAACACCCTTTTAAGAAAATCCTGGAGAGAAAGTATAGGCCTCAGCTTGTGATGGCAATAGCCATACCATTTTTTCAGCAAGTGACAGGGATCAATGTCATATCCTTTTATTCTGCCGTACTTTTTCGAACAATTGGGTTGGGAGAAAGCGCTTCGCTCTTGTCCGTTGTCCTGACGACTGGAGTGGTTGGTACAATCTCAACATTCGTATCTATGCTTATCGTAGACAAATTTGGGCGAAGAGCGTTGTTTTTAGCTGGTGGGATTCAAATGTTGGTGTCACAAATCGTGGTGGGAGGTGTAATGGCAGCTCAGCTTGGTGATCGCGGTGGAGTGAGCAAGGGGTATGCCTATTTGGTGCTGGTTTTGATATGCATTTATGTAGCGGGATTCGGGTGGTCATGGGGGCCGCTCGGATGGTTGGTTCCGAGTGAGATTTTCCCGTTGGAAATTCGATCAGCGGGAGAAAGTATCAATGTGGTGGTGAACTTTTTGTTCACTTTCATTGTTGCTCAAACTTTTCTAGCAATGCTGTGCCACTTCAAGGCTGGGATTTTCTTCTTTTTCGGGGGTTGGGTGGCGGTGATGACGGTGTTTGTGTACTTGTTTTTGCCGGAGACGAAGAATGTGCCGATTGAGAAGATGGAGATAGTGTGGCAGGAGCACTGGTTTTGGAGGAGGATTGTGGGGGACTCTAGCAAGGACACCAAGATGGAAGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

381

Amino Acids

42.0

Weight (kDa)

9.63

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 358	1.4e-95	Sugar (and other) transporter
MFS_1	PF07690	2 - 308	1.9e-14	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61520 AT5G61520
fragaria_vesca	FvH4_5g33980 FvH4_7g27100 FvH4_7g27120
malus_domestica	MD01G1178300.v1.1 MD01G1180000.v1.1 MD07G1250500.v1.1
prunus_persica	Prupe.2G274100_v2.0.a1 Prupe.2G274200_v2.0.a1 Prupe.2G274300_v2.0.a1
pyrus_communis	pycom01g18910 pycom07g22350
rosa_chinensis	RchiOBHm_Chr1g0373911 RchiOBHm_Chr7g0233361
rosa_laevigata	RLG00000001275 RLG00000026796
rosa_multiflora	Rmu_sc0002022.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227340 Rroxscaffold_4G00283910
rosa_rugosa	Rorug01G0379700 Rorug07G0280300 Rorug07G0280400
rosa_samantha	Rh1AG389900 Rh1BG354200 Rh1CG367300 Rh1DG384900 Rh7BG409000 Rh7CG455400
rosa_wichuraiana	Rw0G022460 Rw1G034530 Rw7G035880 Rw7G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	2 cut(s)	311, 744
AciI	CCGC	8 cut(s)	28, 201, 311, 744, 803, 827, 878, 998
AclWI	GGATC	2 cut(s)	321, 515
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	647, 867
AfaI	GTAC	4 cut(s)	80, 537, 610, 1019
AfeI	AGCGCT	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	229, 961
AgsI	TTSAA	2 cut(s)	686, 961
AjnI	CCWGG	1 cut(s)	438
AloI	GAACNNNNNNTCC	2 cut(s)	825, 857
AluBI	AGCT	6 cut(s)	164, 463, 674, 728, 733, 1136
AluI	AGCT	6 cut(s)	164, 463, 674, 728, 733, 1136
Alw21I	GWGCWC	1 cut(s)	1083
Alw26I	GTCTC	1 cut(s)	1028
AlwI	GGATC	2 cut(s)	321, 515
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor51HI	AGCGCT	1 cut(s)	568
AoxI	GGCC	3 cut(s)	25, 455, 824
ApeKI	GCWGC	2 cut(s)	233, 725
ApoI	RAATTY	2 cut(s)	647, 867
AspLEI	GCGC	2 cut(s)	311, 569
AspS9I	GGNCC	1 cut(s)	824
AsuHPI	GGTGA	4 cut(s)	308, 749, 913, 1012
AsuII	TTCGAA	1 cut(s)	544
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BanI	GGYRCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	1083
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	220, 737
BccI	CCATC	4 cut(s)	463, 828, 1054, 1123
BceAI	ACGGC	2 cut(s)	196, 518
BcgI	CGANNNNNNTGC	2 cut(s)	1027, 1061
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	1 cut(s)	1028
BfaI	CTAG	3 cut(s)	224, 941, 1113
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	570
BisI	GCNGC	4 cut(s)	28, 234, 726, 827
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	4 cut(s)	29, 235, 727, 828
Bme1390I	CCNGG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	3 cut(s)	96, 825, 843
BmrFI	CCNGG	1 cut(s)	440
BmrI	ACTGGG	1 cut(s)	269
BmuI	ACTGGG	1 cut(s)	269
BpmI	CTGGAG	2 cut(s)	461, 618
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	729
Bpu14I	TTCGAA	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	22, 228
BsaXI	ACNNNNNCTCC	6 cut(s)	434, 464, 1055, 1070, 1085, 1100
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 961
Bse1I	ACTGG	3 cut(s)	264, 601, 1088
Bse3DI	GCAATG	1 cut(s)	951
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	22, 228
BseGI	GGATG	2 cut(s)	18, 839
BseLI	CCNNNNNNNGG	2 cut(s)	229, 961
BseMI	GCAATG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	177, 473, 743
BseNI	ACTGG	3 cut(s)	264, 601, 1088
BseRI	GAGGAG	2 cut(s)	126, 1108
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	220, 737
BseYI	CCCAGC	1 cut(s)	965
Bsh1236I	CGCG	2 cut(s)	311, 744
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	27, 457, 826
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	1083
BsiSI	CCGG	1 cut(s)	1031
BslFI	GGGAC	2 cut(s)	224, 1121
BslI	CCNNNNNNNGG	2 cut(s)	229, 961
BsmAI	GTCTC	1 cut(s)	1028
BsmBI	CGTCTC	1 cut(s)	1028
BsmFI	GGGAC	2 cut(s)	224, 1121
BsnI	GGCC	3 cut(s)	27, 457, 826
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	1083
Bsp143I	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
Bsp1720I	GCTNAGC	1 cut(s)	729
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	8 cut(s)	28, 201, 311, 744, 803, 827, 878, 998
BspANI	GGCC	3 cut(s)	27, 457, 826
BspCNI	CTCAG	3 cut(s)	178, 472, 742
BspFNI	CGCG	2 cut(s)	311, 744
BspLI	GGNNCC	3 cut(s)	96, 825, 843
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	321, 515
BspQI	GCTCTTC	1 cut(s)	652
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	951
BsrI	ACTGG	3 cut(s)	264, 601, 1088
BssECI	CCNNGG	2 cut(s)	22, 228
BssMI	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	1009
Bst6I	CTCTTC	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	544
BstDEI	CTNAG	3 cut(s)	186, 459, 729
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	18, 839
BstFNI	CGCG	2 cut(s)	311, 744
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	311, 569
BstKTI	GATC	7 cut(s)	195, 316, 385, 390, 510, 742, 875
BstMAI	GTCTC	1 cut(s)	1028
BstMBI	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 242
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	2 cut(s)	311, 744
BstV1I	GCAGC	2 cut(s)	220, 737
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	27, 457, 826
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	18, 839
BtsIMutI	CAGTG	2 cut(s)	257, 1081
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	2 cut(s)	311, 569
Cfr13I	GGNCC	1 cut(s)	824
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	4 cut(s)	79, 536, 609, 1018
CviAII	CATG	3 cut(s)	13, 229, 819
CviQI	GTAC	4 cut(s)	79, 536, 609, 1018
DdeI	CTNAG	3 cut(s)	186, 459, 729
DpnI	GATC	7 cut(s)	194, 315, 384, 389, 509, 741, 874
DpnII	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
EaeI	YGGCCR	1 cut(s)	25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	457
Eco47III	AGCGCT	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	794
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	1028
FaeI	CATG	3 cut(s)	16, 232, 822
FaqI	GGGAC	2 cut(s)	224, 1121
FatI	CATG	3 cut(s)	12, 228, 818
FauI	CCCGC	2 cut(s)	796, 871
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	4 cut(s)	28, 234, 726, 827
FokI	GGATG	2 cut(s)	5, 846
Fsp4HI	GCNGC	4 cut(s)	28, 234, 726, 827
FspBI	CTAG	3 cut(s)	224, 941, 1113
GlaI	GCGC	2 cut(s)	310, 568
GluI	GCNGC	4 cut(s)	28, 234, 726, 827
GsaI	CCCAGC	1 cut(s)	969
GsuI	CTGGAG	2 cut(s)	461, 618
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	3 cut(s)	27, 457, 826
HapII	CCGG	1 cut(s)	1031
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	311, 569
Hin1II	CATG	3 cut(s)	16, 232, 822
Hin6I	GCGC	2 cut(s)	309, 567
HinP1I	GCGC	2 cut(s)	309, 567
HinfI	GANTC	4 cut(s)	216, 682, 807, 1109
HpaII	CCGG	1 cut(s)	1031
HphI	GGTGA	4 cut(s)	308, 749, 913, 1012
Hpy166II	GTNNAC	4 cut(s)	643, 904, 915, 1018
Hpy188I	TCNGA	6 cut(s)	88, 187, 350, 387, 833, 846
Hpy188III	TCNNGA	1 cut(s)	589
Hpy8I	GTNNAC	4 cut(s)	643, 904, 915, 1018
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	1009
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	236, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 242
HpyF3I	CTNAG	3 cut(s)	186, 459, 729
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	16, 232, 822
HspAI	GCGC	2 cut(s)	309, 567
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	113, 263, 1078
Lsp1109I	GCAGC	2 cut(s)	220, 737
MaeI	CTAG	3 cut(s)	224, 941, 1113
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	499, 696
MalI	GATC	7 cut(s)	194, 315, 384, 389, 509, 741, 874
MbiI	CCGCTC	1 cut(s)	829
MboI	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
MboII	GAAGA	5 cut(s)	202, 669, 967, 1051, 1069
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	1083
MluCI	AATT	5 cut(s)	117, 134, 549, 647, 867
MlyI	GAGTC	1 cut(s)	1103
MmeI	TCCRAC	1 cut(s)	843
MnlI	CCTC	9 cut(s)	32, 104, 179, 256, 344, 468, 707, 1086, 1089
Mph1103I	ATGCAT	1 cut(s)	794
MseI	TTAA	3 cut(s)	120, 417, 429
MslI	CAYNNNNRTG	2 cut(s)	11, 1127
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	1 cut(s)	1031
MspR9I	CCNGG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	2 cut(s)	311, 744
MwoI	GCNNNNNNNGC	2 cut(s)	233, 242
NcoI	CCATGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
NlaIII	CATG	3 cut(s)	16, 232, 822
NlaIV	GGNNCC	3 cut(s)	96, 825, 843
NmuCI	GTSAC	2 cut(s)	499, 696
NsiI	ATGCAT	1 cut(s)	794
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	216, 682, 807
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	29, 235, 727, 828
PleI	GAGTC	1 cut(s)	1103
PpsI	GAGTC	1 cut(s)	1103
Psp6I	CCWGG	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	965
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	96, 825, 843
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	80, 537, 610, 1019
RsaNI	GTAC	4 cut(s)	79, 536, 609, 1018
RseI	CAYNNNNRTG	2 cut(s)	11, 1127
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	3 cut(s)	120, 417, 429
SatI	GCNGC	4 cut(s)	28, 234, 726, 827
Sau3AI	GATC	7 cut(s)	192, 313, 382, 387, 507, 739, 872
Sau96I	GGNCC	1 cut(s)	824
SchI	GAGTC	1 cut(s)	1103
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	1083
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	11, 1127
Sse9I	AATT	5 cut(s)	117, 134, 549, 647, 867
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	8 cut(s)	28, 201, 311, 744, 803, 827, 878, 998
SspMI	CTAG	3 cut(s)	224, 941, 1113
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	1009
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	378, 544, 871
TasI	AATT	5 cut(s)	117, 134, 549, 647, 867
TatI	WGTACW	1 cut(s)	1017
TauI	GCSGC	2 cut(s)	30, 829
TfiI	GAWTC	3 cut(s)	216, 682, 807
Tru1I	TTAA	3 cut(s)	120, 417, 429
Tru9I	TTAA	3 cut(s)	120, 417, 429
TscAI	CASTG	2 cut(s)	264, 1088
TseFI	GTSAC	2 cut(s)	499, 696
TseI	GCWGC	2 cut(s)	233, 725
Tsp45I	GTSAC	2 cut(s)	499, 696
TspDTI	ATGAA	2 cut(s)	17, 910
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	264, 1088
XapI	RAATTY	2 cut(s)	647, 867
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	3 cut(s)	224, 941, 1113
Zsp2I	ATGCAT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.