Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004085

Physical Location & Seq

Genomic Coordinates Forward (+)

13296198 .. 13298024

Gene Structure 1827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGCAGCCGGGTTAGCGATAACAAGTGAATACAGGCATTACAATGGCAAGTTGACCCTGATTGTGGTAATATCTTGCATGGTTGCTGCCATGGGAGGTATCATTTTCGGCTATGATATTGGAATTTCAGGTGGAGTGACTTCAATGGAACCATTTCTGAAGAAATTTTTCCCAGAGGTTTACAGAAAGATGAAAGAAGACACGAAAGTCAGCAACTACTGCAAATTTGATAGCCATCTTTTAACCACGTTTACATCCTCTCTCTACATAGCTGGCCTTGTAGCTTCCTTCTTTGCCTCTTCTGTAACCAGAGCATTTGGCCGCAAGCCTTCGATCCTGGTAGCTGGTGTCTCATTCCTTGCTGGTTCGGCTCTAGGTGGTGCAGCTGTTAACTTGTTCATGCTAATATCTGGTCGCATCTTGCTTGGTATTGGAGTTGGCTTTGGAAACCAGGCAGTCCCACTTTATCTCTCAGAAATGGCACCACCAACATTCAGAGGAGCAATCAACATAGGCTTCCAATTATGTGTTGGCATTGGAGTACTATCAGCTAACCTCATCAACTTTGGCACTGAAAAGATCAGAAGCGGCTGGGGTTGGAGAATCTCCCTAGCCATGGCAGCAGTTCCAGCTGCATTACTGACACTAGGTGCTCTTTTCCTACCAGAAACACCAAACAGCTTAATCCAACGCACAAATGACCACGAAAGGGCCAAGCTGATGCTACAACGTACACGAGGAATGGTGGATGTGCAAGCGGAACTGGATGATCTCATCGAAGCAAGTAACAAATCAAAAACAATCGATCACCCTTTCAGGAAAATTGTACAAAGAAAGTATAGGCCTCAACTTGTTATGGCATTAGCTATACCATTCTTTCAACAGCTGACTGGAATAAACGTCATCTCTTTCTATGCTCCAATCCTCTTTCGGACACTCGGTTTAAGTGAAAGCATGTCACTTTTGTCTGCAGTCATTAGCACAGGAGTGGTGGGTACTGCAGCAACCTTCCTATCAATGCTTATGGTGGACAAACTAGGACGAAGAGCTTTGTTCCAAATAGGGGGTATTCAGATGTTTTTGTCCCAAATCATAGTAGGCAGCATTATGGCAGCTAAGCTTGGTGACGTTGGTGGCTTGAGCAAAGTATATGCATATTTGGTGCTGCTCTTCGTATGTATATATGTAGCTGGGTTTGCGTGGTCATGGGGGCCCTTAGGATGGTTGATTCCGAGTGAAATTTTTCCGTTGGAGATTCGATCAGCTGGACAAAGTATTACAGTGGCAGTGAACTTTCTGTTCACTTTTGGTATTGCTCAGACATTTCTTTCTATGCTTTGCTGCTTCAAGTCTGGTATCTTCTTTTTCTTTGGAGGATGGGTGATGGTAATGACTGCATTTGTGTACTTATTGTTGCCTGAGACTACAAATATTCCTATTGAGAAAATGGATGAAGTGTGGGGAGAGCATTGGTTTTGGAAGAGGATTGTGGGTGAAGTGAGGGAGGACATTAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

507

Amino Acids

55.36

Weight (kDa)

9.32

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	26 - 487	4.7e-114	Sugar (and other) transporter
MFS_1	PF07690	76 - 433	9.6e-20	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61520 AT5G61520
fragaria_vesca	FvH4_5g33980 FvH4_7g27100 FvH4_7g27120
malus_domestica	MD01G1178300.v1.1 MD01G1180000.v1.1 MD07G1250500.v1.1
prunus_persica	Prupe.2G274100_v2.0.a1 Prupe.2G274200_v2.0.a1 Prupe.2G274300_v2.0.a1
pyrus_communis	pycom01g18910 pycom07g22350
rosa_chinensis	RchiOBHm_Chr1g0373911 RchiOBHm_Chr7g0233361
rosa_laevigata	RLG00000001275 RLG00000026796
rosa_multiflora	Rmu_sc0002022.1_g000003
rosa_roxburghii	Rroxscaffold_3G00227340 Rroxscaffold_4G00283910
rosa_rugosa	Rorug01G0379700 Rorug07G0280300 Rorug07G0280400
rosa_samantha	Rh1AG389900 Rh1BG354200 Rh1CG367300 Rh1DG384900 Rh7BG409000 Rh7CG455400
rosa_wichuraiana	Rw0G022460 Rw1G034530 Rw7G035880 Rw7G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	481
AciI	CCGC	3 cut(s)	322, 588, 758
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	4 cut(s)	123, 164, 224, 1239
AcuI	CTGAAG	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	5 cut(s)	543, 733, 828, 997, 1406
AfiI	CCNNNNNNNGG	5 cut(s)	64, 616, 709, 1063, 1221
AgsI	TTSAA	3 cut(s)	144, 881, 1348
AjnI	CCWGG	2 cut(s)	336, 450
AleI	CACNNNNGTG	1 cut(s)	986
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	355, 1415
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	5 cut(s)	274, 319, 711, 842, 1211
ApaI	GGGCCC	1 cut(s)	1215
ApoI	RAATTY	4 cut(s)	123, 164, 224, 1239
Asp700I	GAANNNNTTC	3 cut(s)	153, 167, 1242
AspS9I	GGNCC	3 cut(s)	711, 1211, 1212
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	4 cut(s)	800, 1136, 1393, 1505
AxyI	CCTNAGG	1 cut(s)	1216
BaeGI	GKGCMC	1 cut(s)	1215
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	1215
BauI	CACGAG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	655
BccI	CCATC	4 cut(s)	243, 1215, 1371, 1378
BciT130I	CCWGG	2 cut(s)	338, 452
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	355, 1415
BfaI	CTAG	4 cut(s)	374, 611, 647, 1037
BfmI	CTRYAG	2 cut(s)	969, 999
BlpI	GCTNAGC	1 cut(s)	1116
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	3 cut(s)	10, 338, 452
BmgT120I	GGNCC	3 cut(s)	711, 1211, 1212
BmiI	GGNNCC	4 cut(s)	150, 483, 1212, 1213
BmrFI	CCNGG	3 cut(s)	10, 338, 452
BmsI	GCATC	2 cut(s)	426, 711
BpiI	GAAGAC	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	1116
BpuEI	CTTGAG	1 cut(s)	1159
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	90, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	1365, 1395
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 616, 709, 1063, 1221
Bse1I	ACTGG	2 cut(s)	768, 895
Bse21I	CCTNAGG	1 cut(s)	1216
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	338, 452
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	90, 615
BseGI	GGATG	6 cut(s)	254, 754, 772, 1226, 1382, 1456
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	5 cut(s)	64, 616, 709, 1063, 1221
BseMII	CTCAG	3 cut(s)	486, 1331, 1410
BseNI	ACTGG	2 cut(s)	768, 895
BseRI	GAGGAG	1 cut(s)	513
BseSI	GKGCMC	1 cut(s)	1215
BseYI	CCCAGC	2 cut(s)	591, 1190
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	5 cut(s)	276, 321, 713, 844, 1213
BshNI	GGYRCC	1 cut(s)	481
BshVI	ATCGAT	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	443, 1069
BslI	CCNNNNNNNGG	5 cut(s)	64, 616, 709, 1063, 1221
BsmAI	GTCTC	2 cut(s)	355, 1415
BsmFI	GGGAC	2 cut(s)	443, 1069
BsnI	GGCC	5 cut(s)	276, 321, 713, 844, 1213
Bsp120I	GGGCCC	1 cut(s)	1211
Bsp1286I	GDGCHC	2 cut(s)	655, 1215
Bsp1407I	TGTACA	1 cut(s)	826
Bsp143I	GATC	5 cut(s)	333, 579, 769, 805, 1259
Bsp1720I	GCTNAGC	1 cut(s)	1116
Bsp19I	CCATGG	2 cut(s)	90, 615
BspACI	CCGC	3 cut(s)	322, 588, 758
BspANI	GGCC	5 cut(s)	276, 321, 713, 844, 1213
BspCNI	CTCAG	3 cut(s)	485, 1330, 1411
BspDI	ATCGAT	1 cut(s)	804
BspLI	GGNNCC	4 cut(s)	150, 483, 1212, 1213
BspMAI	CTGCAG	2 cut(s)	973, 1003
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	2 cut(s)	1039, 1175
BspT107I	GGYRCC	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	768, 895
BssECI	CCNNGG	2 cut(s)	90, 615
BssMI	GATC	5 cut(s)	333, 579, 769, 805, 1259
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	90, 615
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	338, 452
Bst4CI	ACNGT	1 cut(s)	1282
Bst6I	CTCTTC	4 cut(s)	304, 1039, 1175, 1475
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	826
BstC8I	GCNNGC	3 cut(s)	274, 326, 756
BstDEI	CTNAG	5 cut(s)	472, 1116, 1216, 1317, 1419
BstDSI	CCRYGG	2 cut(s)	90, 615
BstF5I	GGATG	6 cut(s)	254, 754, 772, 1226, 1382, 1456
BstKTI	GATC	5 cut(s)	336, 582, 772, 808, 1262
BstMAI	GTCTC	2 cut(s)	355, 1415
BstMBI	GATC	5 cut(s)	333, 579, 769, 805, 1259
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 219, 368, 620, 629, 1196
BstNI	CCWGG	2 cut(s)	338, 452
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	8, 336, 450
BstSFI	CTRYAG	2 cut(s)	969, 999
BstSLI	GKGCMC	1 cut(s)	1215
BstV2I	GAAGAC	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	804
Bsu36I	CCTNAGG	1 cut(s)	1216
BsuRI	GGCC	5 cut(s)	276, 321, 713, 844, 1213
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	2 cut(s)	90, 615
BtsCI	GGATG	6 cut(s)	254, 754, 772, 1226, 1382, 1456
BtsI	GCAGTG	1 cut(s)	1293
BtsIMutI	CAGTG	3 cut(s)	570, 1287, 1293
Cac8I	GCNNGC	3 cut(s)	274, 326, 756
Cfr13I	GGNCC	3 cut(s)	711, 1211, 1212
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	5 cut(s)	542, 732, 827, 996, 1405
CviAII	CATG	6 cut(s)	79, 91, 400, 616, 955, 1206
CviQI	GTAC	5 cut(s)	542, 732, 827, 996, 1405
DdeI	CTNAG	5 cut(s)	472, 1116, 1216, 1317, 1419
DpnI	GATC	5 cut(s)	335, 581, 771, 807, 1261
DpnII	GATC	5 cut(s)	333, 579, 769, 805, 1259
DraIII	CACNNNGTG	1 cut(s)	650
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	4 cut(s)	304, 1039, 1175, 1475
EarI	CTCTTC	4 cut(s)	304, 1039, 1175, 1475
Eco130I	CCWWGG	2 cut(s)	90, 615
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	1 cut(s)	1215
Eco57I	CTGAAG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	1216
EcoO109I	RGGNCCY	2 cut(s)	1211, 1212
EcoRII	CCWGG	2 cut(s)	336, 450
EcoT14I	CCWWGG	2 cut(s)	90, 615
EcoT22I	ATGCAT	1 cut(s)	1156
EcoT38I	GRGCYC	1 cut(s)	1215
ErhI	CCWWGG	2 cut(s)	90, 615
FaeI	CATG	6 cut(s)	82, 94, 403, 619, 958, 1209
FaqI	GGGAC	2 cut(s)	443, 1069
FatI	CATG	6 cut(s)	78, 90, 399, 615, 954, 1205
FokI	GGATG	6 cut(s)	241, 761, 779, 1233, 1389, 1463
FriOI	GRGCYC	1 cut(s)	1215
FspBI	CTAG	4 cut(s)	374, 611, 647, 1037
GsaI	CCCAGC	2 cut(s)	595, 1194
HaeIII	GGCC	5 cut(s)	276, 321, 713, 844, 1213
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	6 cut(s)	82, 94, 403, 619, 958, 1209
HincII	GTYRAC	2 cut(s)	54, 391
HindII	GTYRAC	2 cut(s)	54, 391
HindIII	AAGCTT	1 cut(s)	1118
HinfI	GANTC	3 cut(s)	603, 1228, 1255
HpaI	GTTAAC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	4 cut(s)	800, 1136, 1393, 1505
Hpy166II	GTNNAC	9 cut(s)	54, 181, 252, 391, 734, 1030, 1291, 1302, 1405
Hpy188I	TCNGA	8 cut(s)	159, 475, 497, 584, 933, 1074, 1233, 1320
Hpy188III	TCNNGA	1 cut(s)	817
Hpy8I	GTNNAC	9 cut(s)	54, 181, 252, 391, 734, 1030, 1291, 1302, 1405
HpyAV	CCTTC	3 cut(s)	298, 339, 1018
HpyCH4III	ACNGT	1 cut(s)	1282
HpyCH4IV	ACGT	4 cut(s)	248, 730, 900, 1128
HpyCH4V	TGCA	9 cut(s)	78, 222, 383, 635, 754, 971, 1001, 1154, 1397
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 219, 368, 620, 629, 1196
HpyF3I	CTNAG	5 cut(s)	472, 1116, 1216, 1317, 1419
HpySE526I	ACGT	4 cut(s)	248, 730, 900, 1128
Hsp92II	CATG	6 cut(s)	82, 94, 403, 619, 958, 1209
KspAI	GTTAAC	1 cut(s)	391
Kzo9I	GATC	5 cut(s)	333, 579, 769, 805, 1259
LguI	GCTCTTC	2 cut(s)	1039, 1175
LmnI	GCTCC	2 cut(s)	500, 922
LweI	GCATC	2 cut(s)	426, 711
MaeI	CTAG	4 cut(s)	374, 611, 647, 1037
MaeII	ACGT	4 cut(s)	248, 730, 900, 1128
MaeIII	GTNAC	5 cut(s)	136, 304, 785, 957, 1124
MalI	GATC	5 cut(s)	335, 581, 771, 807, 1261
MboI	GATC	5 cut(s)	333, 579, 769, 805, 1259
MboII	GAAGA	7 cut(s)	172, 209, 291, 1056, 1162, 1351, 1492
MhlI	GDGCHC	2 cut(s)	655, 1215
MluCI	AATT	6 cut(s)	123, 164, 224, 521, 822, 1239
MmeI	TCCRAC	3 cut(s)	578, 712, 1230
Mph1103I	ATGCAT	1 cut(s)	1156
MroXI	GAANNNNTTC	3 cut(s)	153, 167, 1242
MseI	TTAA	5 cut(s)	242, 390, 683, 944, 1512
MslI	CAYNNNNRTG	2 cut(s)	42, 986
MspA1I	CMGCKG	4 cut(s)	386, 632, 886, 1265
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 338, 452
MvaI	CCWGG	2 cut(s)	338, 452
MwoI	GCNNNNNNNGC	6 cut(s)	14, 219, 368, 620, 629, 1196
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	2 cut(s)	90, 615
NdeII	GATC	5 cut(s)	333, 579, 769, 805, 1259
NlaIII	CATG	6 cut(s)	82, 94, 403, 619, 958, 1209
NlaIV	GGNNCC	4 cut(s)	150, 483, 1212, 1213
NmuCI	GTSAC	3 cut(s)	136, 957, 1124
NsiI	ATGCAT	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	958
OliI	CACNNNNGTG	1 cut(s)	986
PceI	AGGCCT	1 cut(s)	844
PciSI	GCTCTTC	2 cut(s)	1039, 1175
PdmI	GAANNNNTTC	3 cut(s)	153, 167, 1242
PfeI	GAWTC	3 cut(s)	603, 1228, 1255
Psp6I	CCWGG	2 cut(s)	336, 450
PspFI	CCCAGC	2 cut(s)	591, 1190
PspGI	CCWGG	2 cut(s)	336, 450
PspN4I	GGNNCC	4 cut(s)	150, 483, 1212, 1213
PspOMI	GGGCCC	1 cut(s)	1211
PspPI	GGNCC	3 cut(s)	711, 1211, 1212
PstI	CTGCAG	2 cut(s)	973, 1003
PvuII	CAGCTG	4 cut(s)	386, 632, 886, 1265
RsaI	GTAC	5 cut(s)	543, 733, 828, 997, 1406
RsaNI	GTAC	5 cut(s)	542, 732, 827, 996, 1405
RseI	CAYNNNNRTG	2 cut(s)	42, 986
SapI	GCTCTTC	2 cut(s)	1039, 1175
SaqAI	TTAA	5 cut(s)	242, 390, 683, 944, 1512
Sau3AI	GATC	5 cut(s)	333, 579, 769, 805, 1259
Sau96I	GGNCC	3 cut(s)	711, 1211, 1212
ScaI	AGTACT	1 cut(s)	543
ScrFI	CCNGG	3 cut(s)	10, 338, 452
SduI	GDGCHC	2 cut(s)	655, 1215
SfaNI	GCATC	2 cut(s)	426, 711
SfcI	CTRYAG	2 cut(s)	969, 999
SmiMI	CAYNNNNRTG	2 cut(s)	42, 986
SmlI	CTYRAG	1 cut(s)	1138
SmoI	CTYRAG	1 cut(s)	1138
Sse9I	AATT	6 cut(s)	123, 164, 224, 521, 822, 1239
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	322, 588, 758
SspI	AATATT	1 cut(s)	1432
SspMI	CTAG	4 cut(s)	374, 611, 647, 1037
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	3 cut(s)	8, 336, 450
StyI	CCWWGG	2 cut(s)	90, 615
TaaI	ACNGT	1 cut(s)	1282
TaiI	ACGT	4 cut(s)	251, 733, 903, 1131
TaqI	TCGA	4 cut(s)	332, 777, 804, 1258
TasI	AATT	6 cut(s)	123, 164, 224, 521, 822, 1239
TatI	WGTACW	3 cut(s)	541, 826, 1404
TauI	GCSGC	2 cut(s)	324, 591
TfiI	GAWTC	3 cut(s)	603, 1228, 1255
Tru1I	TTAA	5 cut(s)	242, 390, 683, 944, 1512
Tru9I	TTAA	5 cut(s)	242, 390, 683, 944, 1512
TscAI	CASTG	3 cut(s)	577, 1287, 1293
TseFI	GTSAC	3 cut(s)	136, 957, 1124
Tsp45I	GTSAC	3 cut(s)	136, 957, 1124
TspDTI	ATGAA	3 cut(s)	206, 388, 1467
TspGWI	ACGGA	1 cut(s)	1236
TspRI	CASTG	3 cut(s)	577, 1287, 1293
XapI	RAATTY	4 cut(s)	123, 164, 224, 1239
XceI	RCATGY	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmnI	GAANNNNTTC	3 cut(s)	153, 167, 1242
XspI	CTAG	4 cut(s)	374, 611, 647, 1037
ZrmI	AGTACT	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.