Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012559

Physical Location & Seq

Genomic Coordinates Reverse (-)

5976620 .. 5977161

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1074900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGGGAAGGCTGTTCATGAATCATGGGCAGGTGATAAAAGAAGGGATTGATCCGGATTTGCATTTGTGGGTTTCGTTGGTTAATGTTTATGCAAAATGTGGGGACGCTGGGTACGCACGTAAAGTTCTTGACGTGATGCCTGAAAGGGACGTTGTGTCGTGGACTTCTTTAATTCAAGGATGGTACCAAAGCAAATACTTTGCATTGGCGACTGGATTGAAAGCATGTTCTTTGTGCTCCGATTTAGGTTTTGGGAAACAGTTGCATGCTGAAGCGGTAAAACTGAGGTTGTTTTCAGATGCTTTTGTTGGTTCTGGTTTAGTCGGTCTTTATGCAAAATGTGGTGATATGGAACTTGCAGATAGAGTGTTAGTTTGTATGCCTGAGCAGGATGTGGTATCATGGAATGCACTGCTGAATGGGCATGCTCAGGAAGGTGACGGAAATAAAGGTTTGGGACAGAATCAGAAATCAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

161

Amino Acids

17.47

Weight (kDa)

6.4

Isoelectric Point (pI)

26.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07071
malus_domestica	MD02G1074800.v1.1 MD02G1074900.v1.1 MD15G1204000.v1.1
prunus_persica	Prupe.7G213300_v2.0.a1
pyrus_communis	pycom02g05900 pycom15g18080
rosa_chinensis	RchiOBHm_Chr2g0092971
rosa_laevigata	RLG00000016354
rosa_multiflora	Rmu_sc0000965.1_g000018 Rmu_sc0040761.1_g000001 Rmu_sc0040762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148660
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh2AG076800 Rh2BG078200 Rh2CG080400 Rh2DG075400
rosa_wichuraiana	Rw2G006940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	116, 188
AgsI	TTSAA	2 cut(s)	179, 223
AhdI	GACNNNNNGTC	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	47
Aor13HI	TCCGGA	1 cut(s)	55
Asp718I	GGTACC	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	46, 359, 452
BaeI	ACNNNNGTAYC	2 cut(s)	106, 139
BanI	GGYRCC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	242
BccI	CCATC	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	22
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	188
BmsI	GCATC	2 cut(s)	129, 292
Bpu10I	CCTNAGC	2 cut(s)	387, 432
BsaAI	YACGTR	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	55
BseGI	GGATG	2 cut(s)	188, 400
BseMII	CTCAG	3 cut(s)	278, 378, 446
BseNI	ACTGG	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	3 cut(s)	119, 164, 474
BsmFI	GGGAC	3 cut(s)	119, 164, 474
BsmI	GAATGC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	3 cut(s)	279, 379, 445
BspEI	TCCGGA	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	188
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	270, 429
BstDEI	CTNAG	3 cut(s)	287, 387, 432
BstF5I	GGATG	2 cut(s)	188, 400
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 424
BstNSI	RCATGY	3 cut(s)	231, 272, 431
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	188, 400
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	270, 429
CciI	TCATGA	1 cut(s)	18
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	115, 187
CviAII	CATG	6 cut(s)	19, 26, 228, 269, 405, 428
CviJI	RGCY	1 cut(s)	13
CviKI_1	RGCY	1 cut(s)	13
CviQI	GTAC	2 cut(s)	115, 187
DdeI	CTNAG	3 cut(s)	287, 387, 432
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	294
FaeI	CATG	6 cut(s)	22, 29, 231, 272, 408, 431
FaqI	GGGAC	3 cut(s)	119, 164, 474
FatI	CATG	6 cut(s)	18, 25, 227, 268, 404, 427
FokI	GGATG	2 cut(s)	195, 407
GsaI	CCCAGC	1 cut(s)	114
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	6 cut(s)	22, 29, 231, 272, 408, 431
HinfI	GANTC	2 cut(s)	22, 466
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	46, 359, 452
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	244, 301, 471
Hpy188III	TCNNGA	4 cut(s)	19, 56, 131, 434
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	3, 38, 431
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	3 cut(s)	121, 135, 153
HpyCH4V	TGCA	7 cut(s)	64, 95, 206, 268, 338, 362, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 424
HpyF3I	CTNAG	3 cut(s)	287, 387, 432
HpySE526I	ACGT	3 cut(s)	121, 135, 153
Hsp92II	CATG	6 cut(s)	22, 29, 231, 272, 408, 431
Kpn2I	TCCGGA	1 cut(s)	55
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	245
LweI	GCATC	2 cut(s)	129, 292
MaeII	ACGT	3 cut(s)	121, 135, 153
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	55
MseI	TTAA	2 cut(s)	84, 173
MspI	CCGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	116, 424
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	6 cut(s)	22, 29, 231, 272, 408, 431
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	3 cut(s)	231, 272, 431
PaeI	GCATGC	2 cut(s)	272, 431
PagI	TCATGA	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	22
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	22, 466
Ppu21I	YACGTR	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	188
RsaI	GTAC	2 cut(s)	116, 188
RsaNI	GTAC	2 cut(s)	115, 187
SaqAI	TTAA	2 cut(s)	84, 173
Sau3AI	GATC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	9 cut(s)	36, 124, 138, 156, 253, 293, 442, 457, 481
SfaNI	GCATC	2 cut(s)	129, 292
SphI	GCATGC	2 cut(s)	272, 431
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	3 cut(s)	124, 138, 156
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	22, 466
Tru1I	TTAA	2 cut(s)	84, 173
Tru9I	TTAA	2 cut(s)	84, 173
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	7, 35
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	420
XceI	RCATGY	3 cut(s)	231, 272, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.