RchiOBHm_Chr2g0092971

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012559
Physical Location & Seq
Reverse (-)
6366278 .. 6370476
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46804

Sequence Viewer

Length: 2919 bp
ATGTCACCGGGGTTTCGAGGCCTGTTACTGCCAATTTGCCAAAGACCCACTACTTATTCGGTTCGATTGCATGGCAAGATTAGTCCCAGTGTCAGGTCATTGTTGCTGTCTAGATTGAAGTCTTGTTCTTGTGCTGCTGTGAATGTTGTTGAGTCGAGTCCAATCAGTGATTTGGCTCAAAACCATACCCGAAAATTGGAGACTCAAGTAGGATTAGATAATGGGAATGTGGGTGATCAGGAAATAGTAGGAGATGATGTGAAAGCCAGGCCTTTCGTTTGGAATGGGAAGAAGAGGCTTATACGGTATTCTGGGATGCTTCGTGCCTGTGCTTCACAAGGGTCTTTGAATGAGGGGAAGGCTATTCATGGGCAGGTGATAAAGAATGGGATACACCCTGATTCGCATTTGTGGGTTTCGTTGGTTAATGTTTACTCGAAATGTGGGGATTCTGCGTATGCCCGCAAAGTGCTTGGTGAGATGCCTGAACGAGATGTTGTGTCGTGGACTACTTTAATTCATGGGTTTGTGGTCAAAGGTTCTGGTGTTGATGCTGTTAATTTGTTCTGTGAGATGAAGAAAGATGGTACAAGAGCAAATGACTTTTCGTTGGCTACTGGTTTGAAAGCGTGTTCTTTGTGCTTAGATTTAAGCTTTGGAAAGCAGTTGCATGCTGAAGCAGTGAAAGCGGGGTTCTTTTCCGATGGTTTTGTTGGATCTGCTCTCGTTGATCTTTATGCAAAATGTGGTGAGATGGAACTCGCCAATAGAGTGTTATTTTGTATGCCTGAGCAGAATGTTGTATCATGGAATGCCCTGCTAAATGGGTATGCTCAGGAAGGTGATGGAAATCAAGTTCTGAAATTGTTTTGCAAAATGACGGAATCAGATATGAGGTTAAGTAAGTTCACCTTGTCTACTGTCCTTAAAGGTTGTGCAAACATAGAAAATTTGAGAGTAGGTCGGATTGTGCATTCTTTGGTTGTCAAAGTTGGGTTTGAGGTTGATGAATTCCTGGGTTGCAGTCTTGTTGATATGTATTCTAAGTGTCGAATGGCAATTGATGCAGTAAAAGTATTCAGGACGATTAAAGATCCTGATGTAGTGGCCTGGAGTGCTATTATCACTTGCCTTGATCAACAAAGGCAATACCAGGAAATGGCTAGACTATTTCGTTCAATGATAAGCACAGGCATCTCACCGAACCAATTTACCCTTTCTAGTATTATTAGTGCTGCCACTGATCTTGGAGACCTCCATTTTGGTGAGAGCATCCATGCTCTTATATGGAAATATGGCTATGAATCTGATCTTCCAGTCAGCAATGCTCTGATCACAATGTATATGAAAATTGGATGTGTGAGAAATGGTGCTCAGGTTTTTGAGGCAATGACAGAACATGATCTGATTTCATGGAATGCCCTTCTATCTGGAGCACACGACCTAGGTCCAAGAGTATTCCACCAAATGCTTGCTGAAGGTTGCAAGCCCAACATGTATTCCTTCATCAGTATTTTAAGATCCTGTTCTAGCCTCTTGGATGCAGACCTCGGGAAACAAGTGCATGCCCATATTGTCAAAACAAGCCTCCATGATAATGACTTTGTTGGGACGGCTCTCATTGACATGTATGCCAAAAGTAGGTTCTTAGATGATGCTGTTATAGCTTTCAGTAGATTGAGTAATCGAGATCTTTTCACTTGGACAGTCATCATTACTGGTTATGTACAAACTGATCAAGCAGAGAAAGCTGTTGCTTGTTTCAGTCAGATGCAACAAGAAGGAGTGAAGCCAAACGAGTTCACTCTTGCTGGCTGTTTGAGTGCTTGCTCCCGTATAGCTATGCTGGAAAATGGGCGGCAGCTCCATTCGATGGCAATTAAGGCTGGGCATTTAGAAGATTTGTTTGTTGGTAGTGCCCTCGTTGATATGTATGCAAAATGCGGATGCATTGCTGATGCTGAGGGTACCTTTGAGGGTTTGGCTTCCAGGGATACAGTCTCATGGAACATCATGATTTGTGGATTCTCTCAATATGGTCAAGGAGAGAAGGCTCTGGAAGCCTTTTCGACAATGTTAGATGAAGGCGTCATGCCAGATGAGATCACTTTCATAGGTGTTCTTTCAGCTTGCAGTCACCTGGGTTTGGTTGAAGAAGGGAAAAAGCACTTTGACTCGCTGAGCAAAGTTTTCCAGATCACTCCTACCATTGAGCATTATGCTTGTATGGTTGATATTCTTGGTAGTGCTGGGAAATTTGATGAGGTTGAAAGCTTTATTGTGACAATGAAACTGACACCGTATGCCATTATTTGGGAGACTGTTCTTGGAGCTTGTAAGAAGTATGGAAATGTGGATTTTGGTGAAAGTGCTGCAGGAAAGCTTTTTGAGCTTGAACCTGAGATGGATTCGACTTATATATTGCTGTCAAATATCTATGCAAATAAAGGTAGATGGGATGATGTTAGAAAAGTCAGGACATTAATGTCCAGCCAGGGTATTAAAAAGGAGCCTGGTTGTAGCTGGGTTGAAGTTGATGGACAAGTCCACACTTTTGTCTCTCATGATGGTTCGCATCCAAGAACCAAGGAAATCCATCTGAAATTGGAGGAACTAGGTCAAAAGCTGACTTCAGTTGGTTATATACCAGAAACTGAGAATGTTCTTCACAATATCACTGAACAAGAAAAAGAGGAACATCTCCAATATCATAGTGAAAGGTTGGCTCTTGCGTATGCCCTTCTAAGCACCGATCCTGTAAAAACTATTCGTATTTTCAAAAATCTTCGCATATGTGGGGACTGCCATGATGTTATGAAGCTCATCTCAGATGTCATGAATAGAGAGATAATTGTTCGTGACATCAAGCGATTTCATCATTTTAAGAATGGCACTTGCTCCTGTCAGGACTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

972

Amino Acids

107.66

Weight (kDa)

6.1

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 164 - 211 1.5e-08 PPR repeat family
PPR PF01535 167 - 196 6.2e-06 PPR repeat
PPR_2 PF13041 266 - 314 2e-11 PPR repeat family
PPR PF01535 268 - 296 3.8e-06 PPR repeat
PPR_2 PF13041 366 - 412 4.2e-08 PPR repeat family
PPR_2 PF13041 564 - 611 2.1e-10 PPR repeat family
PPR_2 PF13041 664 - 712 3.9e-11 PPR repeat family
PPR PF01535 667 - 697 6.9e-06 PPR repeat
E_motif PF20431 782 - 844 3.9e-25 E motif
DYW_deaminase PF14432 880 - 972 3.7e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
AasI GACNNNNNNGTC 1 cut(s) 2485
Acc36I ACCTGC 1 cut(s) 364
Acc65I GGTACC 1 cut(s) 1967
AccB1I GGYRCC 1 cut(s) 1967
AccB7I CCANNNNNTGG 3 cut(s) 1159, 1873, 2313
AccI GTMKAC 1 cut(s) 917
AciI CCGC 4 cut(s) 463, 689, 1858, 1944
AclWI GGATC 4 cut(s) 724, 1088, 1515, 2747
AcsI RAATTY 3 cut(s) 949, 1010, 2255
AcuI CTGAAG 3 cut(s) 696, 1497, 2616
AcyI GRCGYC 1 cut(s) 2088
AfaI GTAC 3 cut(s) 589, 1728, 1969
AfiI CCNNNNNNNGG 7 cut(s) 93, 196, 1159, 1641, 1873, 2146, 2313
AflIII ACRYGT 2 cut(s) 1494, 1626
AgsI TTSAA 9 cut(s) 118, 349, 625, 1179, 2153, 2270, 2396, 2531, 2779
AjnI CCWGG 8 cut(s) 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
AjuI GAANNNNNNNTTGG 2 cut(s) 1628, 1660
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
Alw21I GWGCWC 2 cut(s) 1375, 1438
Alw26I GTCTC 5 cut(s) 194, 1245, 2005, 2312, 2563
AlwI GGATC 4 cut(s) 724, 1088, 1515, 2747
AlwNI CAGNNNCTG 1 cut(s) 2654
Ama87I CYCGRG 1 cut(s) 1550
AoxI GGCC 3 cut(s) 19, 269, 1107
ApeKI GCWGC 4 cut(s) 134, 1235, 1861, 2372
ApoI RAATTY 3 cut(s) 949, 1010, 2255
ArsI GACNNNNNNTTYG 2 cut(s) 1244, 1276
AseI ATTAAT 1 cut(s) 2483
Asp718I GGTACC 1 cut(s) 1967
AspA2I CCTAGG 1 cut(s) 1444
AspS9I GGNCC 1 cut(s) 1448
AsuC2I CCSGG 1 cut(s) 9
AvaI CYCGRG 1 cut(s) 1550
AvaII GGWCC 1 cut(s) 1448
AvrII CCTAGG 1 cut(s) 1444
BaeGI GKGCMC 1 cut(s) 1921
BanI GGYRCC 1 cut(s) 1967
Bbv12I GWGCWC 2 cut(s) 1375, 1438
BbvCI CCTCAGC 1 cut(s) 1962
BbvI GCAGC 4 cut(s) 121, 1222, 1873, 2359
BceAI ACGGC 1 cut(s) 1629
BciT130I CCWGG 8 cut(s) 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
BciVI GTATCC 2 cut(s) 384, 1987
BclI TGATCA 4 cut(s) 235, 1135, 1332, 1735
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 5 cut(s) 194, 1245, 2005, 2312, 2563
BfaI CTAG 6 cut(s) 111, 1164, 1221, 1445, 1530, 2615
BfmI CTRYAG 1 cut(s) 2373
BfuAI ACCTGC 1 cut(s) 364
BfuI GTATCC 2 cut(s) 384, 1987
BglII AGATCT 1 cut(s) 1690
BisI GCNGC 5 cut(s) 135, 1236, 1859, 1862, 2373
BlnI CCTAGG 1 cut(s) 1444
BlpI GCTNAGC 1 cut(s) 2180
BlsI GCNGC 5 cut(s) 136, 1237, 1860, 1863, 2374
Bme1390I CCNGG 9 cut(s) 9, 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
Bme18I GGWCC 1 cut(s) 1448
BmeT110I CYCGRG 1 cut(s) 1550
BmgT120I GGNCC 1 cut(s) 1448
BmiI GGNNCC 2 cut(s) 1969, 2511
BmrFI CCNGG 9 cut(s) 9, 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 1446
BpmI CTGGAG 2 cut(s) 1132, 1452
Bpu10I CCTNAGC 4 cut(s) 789, 834, 1374, 1962
Bpu1102I GCTNAGC 1 cut(s) 2180
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 2088
BsaI GGTCTC 1 cut(s) 1245
BsaJI CCNNGG 8 cut(s) 8, 1015, 1444, 1549, 1989, 2140, 2494, 2586
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 7 cut(s) 93, 196, 1159, 1641, 1873, 2146, 2313
Bse1I ACTGG 4 cut(s) 87, 622, 1316, 1723
Bse3DI GCAATG 3 cut(s) 1330, 1395, 1950
Bse8I GATNNNNATC 1 cut(s) 849
BseBI CCWGG 8 cut(s) 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
BseDI CCNNGG 8 cut(s) 8, 1015, 1444, 1549, 1989, 2140, 2494, 2586
BseGI GGATG 7 cut(s) 321, 1272, 1361, 1546, 1952, 2464, 2575
BseJI GATNNNNATC 1 cut(s) 849
BseLI CCNNNNNNNGG 7 cut(s) 93, 196, 1159, 1641, 1873, 2146, 2313
BseMI GCAATG 3 cut(s) 1330, 1395, 1950
BseMII CTCAG 8 cut(s) 780, 848, 1388, 1953, 2171, 2391, 2646, 2841
BseNI ACTGG 4 cut(s) 87, 622, 1316, 1723
BseSI GKGCMC 1 cut(s) 1921
BseXI GCAGC 4 cut(s) 121, 1222, 1873, 2359
BseYI CCCAGC 3 cut(s) 1886, 2249, 2523
BshFI GGCC 3 cut(s) 21, 271, 1109
BshNI GGYRCC 1 cut(s) 1967
BsiHKAI GWGCWC 2 cut(s) 1375, 1438
BsiHKCI CYCGRG 1 cut(s) 1550
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 3 cut(s) 69, 1624, 2813
BslI CCNNNNNNNGG 7 cut(s) 93, 196, 1159, 1641, 1873, 2146, 2313
BsmAI GTCTC 5 cut(s) 194, 1245, 2005, 2312, 2563
BsmFI GGGAC 3 cut(s) 69, 1624, 2813
BsmI GAATGC 3 cut(s) 817, 973, 1423
BsnI GGCC 3 cut(s) 21, 271, 1109
Bso31I GGTCTC 1 cut(s) 1245
BsoBI CYCGRG 1 cut(s) 1550
Bsp1286I GDGCHC 3 cut(s) 1375, 1438, 1921
Bsp1407I TGTACA 1 cut(s) 1726
Bsp1720I GCTNAGC 1 cut(s) 2180
BspACI CCGC 4 cut(s) 463, 689, 1858, 1944
BspANI GGCC 3 cut(s) 21, 271, 1109
BspCNI CTCAG 8 cut(s) 781, 847, 1387, 1954, 2172, 2392, 2647, 2840
BspHI TCATGA 3 cut(s) 2013, 2563, 2835
BspLI GGNNCC 2 cut(s) 1969, 2511
BspMAI CTGCAG 1 cut(s) 2377
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 4 cut(s) 724, 1088, 1515, 2747
BspT107I GGYRCC 1 cut(s) 1967
BspTNI GGTCTC 1 cut(s) 1245
BsrDI GCAATG 3 cut(s) 1330, 1395, 1950
BsrGI TGTACA 1 cut(s) 1726
BsrI ACTGG 4 cut(s) 87, 622, 1316, 1723
BssECI CCNNGG 8 cut(s) 8, 1015, 1444, 1549, 1989, 2140, 2494, 2586
BssNI GRCGYC 1 cut(s) 2088
BssT1I CCWWGG 2 cut(s) 1444, 2586
Bst2UI CCWGG 8 cut(s) 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
Bst4CI ACNGT 6 cut(s) 306, 922, 1708, 1999, 2301, 2323
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 2088
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstAUI TGTACA 1 cut(s) 1726
BstC8I GCNNGC 8 cut(s) 463, 672, 1473, 1487, 1566, 1813, 1828, 2131
BstF5I GGATG 7 cut(s) 321, 1272, 1361, 1546, 1952, 2464, 2575
BstMAI GTCTC 5 cut(s) 194, 1245, 2005, 2312, 2563
BstMWI GCNNNNNNNGC 8 cut(s) 686, 1064, 1115, 1664, 1748, 1883, 2060, 2389
BstNI CCWGG 8 cut(s) 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
BstNSI RCATGY 4 cut(s) 674, 1498, 1568, 1630
BstPAI GACNNNNGTC 1 cut(s) 1446
BstSCI CCNGG 9 cut(s) 7, 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
BstSFI CTRYAG 1 cut(s) 2373
BstSLI GKGCMC 1 cut(s) 1921
BstV1I GCAGC 4 cut(s) 121, 1222, 1873, 2359
BstX2I RGATCY 4 cut(s) 716, 1093, 1520, 1690
BstYI RGATCY 4 cut(s) 716, 1093, 1520, 1690
BsuI GTATCC 2 cut(s) 384, 1987
BsuRI GGCC 3 cut(s) 21, 271, 1109
BtsCI GGATG 7 cut(s) 321, 1272, 1361, 1546, 1952, 2464, 2575
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 5 cut(s) 94, 172, 687, 1239, 2676
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 8 cut(s) 463, 672, 1473, 1487, 1566, 1813, 1828, 2131
CaiI CAGNNNCTG 1 cut(s) 2654
CciI TCATGA 3 cut(s) 2013, 2563, 2835
Cfr13I GGNCC 1 cut(s) 1448
CseI GACGC 1 cut(s) 2077
Csp6I GTAC 3 cut(s) 588, 1727, 1968
CspCI CAANNNNNGTGG 2 cut(s) 1228, 1263
CviQI GTAC 3 cut(s) 588, 1727, 1968
DrdI GACNNNNNNGTC 1 cut(s) 2485
DseDI GACNNNNNNGTC 1 cut(s) 2485
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 1444, 2586
Eco147I AGGCCT 2 cut(s) 21, 271
Eco31I GGTCTC 1 cut(s) 1245
Eco47I GGWCC 1 cut(s) 1448
Eco57I CTGAAG 3 cut(s) 696, 1497, 2616
Eco88I CYCGRG 1 cut(s) 1550
EcoRI GAATTC 1 cut(s) 1010
EcoRII CCWGG 8 cut(s) 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
EcoT14I CCWWGG 2 cut(s) 1444, 2586
EcoT22I ATGCAT 1 cut(s) 1952
ErhI CCWWGG 2 cut(s) 1444, 2586
FalI AAGNNNNNCTT 2 cut(s) 896, 928
FaqI GGGAC 3 cut(s) 69, 1624, 2813
FauI CCCGC 2 cut(s) 470, 682
FauNDI CATATG 1 cut(s) 2792
FbaI TGATCA 4 cut(s) 235, 1135, 1332, 1735
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 5 cut(s) 135, 1236, 1859, 1862, 2373
FokI GGATG 7 cut(s) 328, 1259, 1368, 1553, 1959, 2471, 2562
Fsp4HI GCNGC 5 cut(s) 135, 1236, 1859, 1862, 2373
FspBI CTAG 6 cut(s) 111, 1164, 1221, 1445, 1530, 2615
GluI GCNGC 5 cut(s) 135, 1236, 1859, 1862, 2373
GsaI CCCAGC 3 cut(s) 1890, 2253, 2527
GsuI CTGGAG 2 cut(s) 1132, 1452
HaeIII GGCC 3 cut(s) 21, 271, 1109
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 2077
Hin1I GRCGYC 1 cut(s) 2088
HindIII AAGCTT 3 cut(s) 652, 2272, 2381
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 6 cut(s) 433, 507, 909, 918, 1803, 2548
Hpy8I GTNNAC 6 cut(s) 433, 507, 909, 918, 1803, 2548
HpyCH4III ACNGT 6 cut(s) 306, 922, 1708, 1999, 2301, 2323
HpyF10VI GCNNNNNNNGC 8 cut(s) 686, 1064, 1115, 1664, 1748, 1883, 2060, 2389
Hsp92I GRCGYC 1 cut(s) 2088
KpnI GGTACC 1 cut(s) 1971
Ksp22I TGATCA 4 cut(s) 235, 1135, 1332, 1735
LmnI GCTCC 6 cut(s) 1433, 1835, 1869, 2330, 2509, 2903
Lsp1109I GCAGC 4 cut(s) 121, 1222, 1873, 2359
MaeI CTAG 6 cut(s) 111, 1164, 1221, 1445, 1530, 2615
MaeIII GTNAC 5 cut(s) 3, 24, 2135, 2281, 2858
MboII GAAGA 8 cut(s) 301, 304, 589, 1304, 1910, 2165, 2657, 2777
MfeI CAATTG 1 cut(s) 1059
MflI RGATCY 4 cut(s) 716, 1093, 1520, 1690
MhlI GDGCHC 3 cut(s) 1375, 1438, 1921
MlyI GAGTC 4 cut(s) 161, 166, 196, 2168
MmeI TCCRAC 2 cut(s) 694, 944
Mph1103I ATGCAT 1 cut(s) 1952
MslI CAYNNNNRTG 3 cut(s) 1263, 1596, 1625
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 9 cut(s) 9, 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 3 cut(s) 817, 973, 1423
MvaI CCWGG 8 cut(s) 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
MwoI GCNNNNNNNGC 8 cut(s) 686, 1064, 1115, 1664, 1748, 1883, 2060, 2389
NciI CCSGG 1 cut(s) 9
NdeI CATATG 1 cut(s) 2792
NlaIV GGNNCC 2 cut(s) 1969, 2511
NmuCI GTSAC 4 cut(s) 3, 2135, 2281, 2858
NsiI ATGCAT 1 cut(s) 1952
NspI RCATGY 4 cut(s) 674, 1498, 1568, 1630
PaeI GCATGC 2 cut(s) 674, 1568
PagI TCATGA 3 cut(s) 2013, 2563, 2835
PaqCI CACCTGC 1 cut(s) 364
PceI AGGCCT 2 cut(s) 21, 271
PciI ACATGT 2 cut(s) 1494, 1626
PctI GAATGC 3 cut(s) 817, 973, 1423
PfeI GAWTC 6 cut(s) 401, 449, 884, 1304, 2025, 2408
PflMI CCANNNNNTGG 3 cut(s) 1159, 1873, 2313
PkrI GCNGC 5 cut(s) 136, 1237, 1860, 1863, 2374
PleI GAGTC 4 cut(s) 160, 165, 196, 2168
PpsI GAGTC 4 cut(s) 160, 165, 196, 2168
PscI ACATGT 2 cut(s) 1494, 1626
PshAI GACNNNNGTC 1 cut(s) 1446
PshBI ATTAAT 1 cut(s) 2483
Psp6I CCWGG 8 cut(s) 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
PspFI CCCAGC 3 cut(s) 1886, 2249, 2523
PspGI CCWGG 8 cut(s) 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
PspN4I GGNNCC 2 cut(s) 1969, 2511
PspPI GGNCC 1 cut(s) 1448
PstI CTGCAG 1 cut(s) 2377
PstNI CAGNNNCTG 1 cut(s) 2654
PsuI RGATCY 4 cut(s) 716, 1093, 1520, 1690
RsaI GTAC 3 cut(s) 589, 1728, 1969
RsaNI GTAC 3 cut(s) 588, 1727, 1968
RseI CAYNNNNRTG 3 cut(s) 1263, 1596, 1625
SatI GCNGC 5 cut(s) 135, 1236, 1859, 1862, 2373
Sau96I GGNCC 1 cut(s) 1448
SchI GAGTC 4 cut(s) 161, 166, 196, 2168
ScrFI CCNGG 9 cut(s) 9, 268, 1016, 1111, 1154, 1990, 2141, 2495, 2514
SduI GDGCHC 3 cut(s) 1375, 1438, 1921
SfcI CTRYAG 1 cut(s) 2373
SinI GGWCC 1 cut(s) 1448
SmiMI CAYNNNNRTG 3 cut(s) 1263, 1596, 1625
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 2 cut(s) 674, 1568
SseBI AGGCCT 2 cut(s) 21, 271
SsiI CCGC 4 cut(s) 463, 689, 1858, 1944
SspMI CTAG 6 cut(s) 111, 1164, 1221, 1445, 1530, 2615
StuI AGGCCT 2 cut(s) 21, 271
StyD4I CCNGG 9 cut(s) 7, 266, 1014, 1109, 1152, 1988, 2139, 2493, 2512
StyI CCWWGG 2 cut(s) 1444, 2586
TaaI ACNGT 6 cut(s) 306, 922, 1708, 1999, 2301, 2323
TaqI TCGA 9 cut(s) 16, 64, 155, 437, 1051, 1687, 1871, 2069, 2411
TatI WGTACW 1 cut(s) 1726
TauI GCSGC 1 cut(s) 1861
TfiI GAWTC 6 cut(s) 401, 449, 884, 1304, 2025, 2408
TscAI CASTG 5 cut(s) 94, 172, 687, 1246, 2683
TseFI GTSAC 4 cut(s) 3, 2135, 2281, 2858
TseI GCWGC 4 cut(s) 134, 1235, 1861, 2372
Tsp45I GTSAC 4 cut(s) 3, 2135, 2281, 2858
TspGWI ACGGA 1 cut(s) 896
TspRI CASTG 5 cut(s) 94, 172, 687, 1246, 2683
Van91I CCANNNNNTGG 3 cut(s) 1159, 1873, 2313
VpaK11BI GGWCC 1 cut(s) 1448
VspI ATTAAT 1 cut(s) 2483
XapI RAATTY 3 cut(s) 949, 1010, 2255
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 4 cut(s) 674, 1498, 1568, 1630
XmaJI CCTAGG 1 cut(s) 1444
XmiI GTMKAC 1 cut(s) 917
XspI CTAG 6 cut(s) 111, 1164, 1221, 1445, 1530, 2615
Zsp2I ATGCAT 1 cut(s) 1952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.