Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012559

Physical Location & Seq

Genomic Coordinates Reverse (-)

3978870 .. 3979819

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCTCAAACTCTGAGACTCAGCTTCGTCAATGTGAAAACTGCCGGGCTTCTAATTTTCGATAATGGCAATTCATCTAATCATGAAATAGCAGGGAACAATGTGAAAACTGCCGGGCTTCTAATTTTCGATACCAAAAAGAGGCTTATGCGTTATTCTGGGATGCTTCGTACCTGTGTTTCGCTAAGGTCTTTGAATGAGGGGAAGGCTGTTCATGGGCAGGTGATAAAAGAAGGGATTGATCCGGATTTGCATTTGTGGGTTTCTTTGGTTAATGATTATGCAAAATGTGGGGACGCTGGGTACGTACGTAAAGTTCTTGATGTGATGCCTGAAAGGGACGTTGTGTCGTGGACTTCTTTAATTCAAGGGTTTGTAGTTGAAGGTTCTGGTGTTGATGCTGTTAAATTGTTCTGTGAGATGAAGAAAGATGGTACAAAAGCAAATGACTTTGCATTGGCGACTGGATTGAAAGCATGTTCTTTGTGCTCCGATTTAGGTTTTGGGAAACAGTTGCATACTGAAGCAGTGAAACTAGGAGTGTTATTTTGTATGCCTGAGCAGGATGTGGTATCATGGAATGCACTGCTGAATGGGCATGCTCAGGAAGGTGACAGAAATAAAGTTTTGGAATTGTTTTGCAGAATGACGGAATCAAAAATCAGGTTGAGCAAGTCCACCTTGTCCACTGTCCTCAAAGGTTGTGCGAACTCGGGAAATTTGAGAGGAGGTCAGTTTTTGCATTCTCTAGTAGTCAAAATTGGGTTTCAGATGGATGAATTCTTGGGTTGCAGTCTCGTTGAATTGTATTTAAAGTGTGGGATGGCTGTCGATGCTGTAAAAGCATTCAGGATGATTGAAAAACCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

291

Amino Acids

31.77

Weight (kDa)

8.62

Isoelectric Point (pI)

23.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	113 - 159	5.4e-09	PPR repeat family
PPR	PF01535	116 - 145	5.5e-07	PPR repeat
PPR_2	PF13041	189 - 237	1.5e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07071
malus_domestica	MD02G1074800.v1.1 MD02G1074900.v1.1 MD15G1204000.v1.1
prunus_persica	Prupe.7G213300_v2.0.a1
pyrus_communis	pycom02g05900 pycom15g18080
rosa_chinensis	RchiOBHm_Chr2g0092971
rosa_laevigata	RLG00000016354
rosa_multiflora	Rmu_sc0000965.1_g000018 Rmu_sc0040761.1_g000001 Rmu_sc0040762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148660
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh2AG076800 Rh2BG078200 Rh2CG080400 Rh2DG075400
rosa_wichuraiana	Rw2G006940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	244
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	718, 779
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	4 cut(s)	172, 305, 309, 436
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	6 cut(s)	196, 368, 383, 472, 803, 860
AhdI	GACNNNNNGTC	1 cut(s)	346
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	2 cut(s)	10, 800
AlwI	GGATC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	712
Aor13HI	TCCGGA	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	718, 779
AsuC2I	CCSGG	2 cut(s)	46, 115
AsuHPI	GGTGA	2 cut(s)	235, 623
AvaI	CYCGRG	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	295, 328
Bbv12I	GWGCWC	1 cut(s)	491
BccI	CCATC	3 cut(s)	425, 766, 817
BcnI	CCSGG	2 cut(s)	46, 115
BcoDI	GTCTC	2 cut(s)	10, 800
BfaI	CTAG	2 cut(s)	536, 749
BfuAI	ACCTGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	46, 115
BmeRI	GACNNNNNGTC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	712
BmrFI	CCNGG	2 cut(s)	46, 115
BmsI	GCATC	4 cut(s)	153, 318, 388, 823
Bpu10I	CCTNAGC	3 cut(s)	185, 558, 603
BpuMI	CCSGG	2 cut(s)	46, 115
BsaAI	YACGTR	2 cut(s)	307, 311
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	469
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	5 cut(s)	168, 571, 781, 828, 858
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	4 cut(s)	5, 34, 549, 617
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	45, 114, 245
BsiWI	CGTACG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	308, 353
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	10, 800
BsmFI	GGGAC	2 cut(s)	308, 353
BsmI	GAATGC	3 cut(s)	586, 742, 845
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	241
BspCNI	CTCAG	4 cut(s)	6, 33, 550, 616
BspEI	TCCGGA	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	469
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	513, 691
BstBAI	YACGTR	2 cut(s)	307, 311
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	5 cut(s)	14, 20, 185, 558, 603
BstF5I	GGATG	5 cut(s)	168, 571, 781, 828, 858
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	10, 800
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	595, 833, 842
BstNSI	RCATGY	2 cut(s)	480, 602
BstSCI	CCNGG	2 cut(s)	44, 113
BstSNI	TACGTA	2 cut(s)	307, 311
BtsCI	GGATG	5 cut(s)	168, 571, 781, 828, 858
BtsI	GCAGTG	2 cut(s)	534, 584
BtsIMutI	CAGTG	3 cut(s)	534, 584, 687
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	82
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	171, 304, 308, 435
CviAII	CATG	6 cut(s)	83, 215, 477, 576, 599, 868
CviJI	RGCY	6 cut(s)	24, 49, 118, 145, 209, 827
CviKI_1	RGCY	6 cut(s)	24, 49, 118, 145, 209, 827
CviQI	GTAC	4 cut(s)	171, 304, 308, 435
DdeI	CTNAG	5 cut(s)	14, 20, 185, 558, 603
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
DraI	TTTAAA	1 cut(s)	813
DriI	GACNNNNNGTC	1 cut(s)	346
Eam1105I	GACNNNNNGTC	1 cut(s)	346
Eco105I	TACGTA	2 cut(s)	307, 311
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	779
FaeI	CATG	6 cut(s)	86, 218, 480, 579, 602, 871
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	2 cut(s)	308, 353
FatI	CATG	6 cut(s)	82, 214, 476, 575, 598, 867
FokI	GGATG	5 cut(s)	175, 578, 788, 835, 865
FspBI	CTAG	2 cut(s)	536, 749
GsaI	CCCAGC	1 cut(s)	303
HapII	CCGG	3 cut(s)	45, 114, 245
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	6 cut(s)	86, 218, 480, 579, 602, 871
HinfI	GANTC	2 cut(s)	18, 653
HpaII	CCGG	3 cut(s)	45, 114, 245
HphI	GGTGA	2 cut(s)	235, 623
Hpy166II	GTNNAC	3 cut(s)	354, 678, 687
Hpy188I	TCNGA	3 cut(s)	15, 493, 771
Hpy188III	TCNNGA	6 cut(s)	83, 245, 320, 605, 714, 850
Hpy8I	GTNNAC	3 cut(s)	354, 678, 687
HpyAV	CCTTC	4 cut(s)	199, 227, 377, 602
HpyCH4III	ACNGT	2 cut(s)	513, 691
HpyCH4IV	ACGT	3 cut(s)	306, 310, 342
HpyCH4V	TGCA	8 cut(s)	253, 284, 455, 517, 584, 642, 742, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	595, 833, 842
HpyF3I	CTNAG	5 cut(s)	14, 20, 185, 558, 603
HpySE526I	ACGT	3 cut(s)	306, 310, 342
Hsp92II	CATG	6 cut(s)	86, 218, 480, 579, 602, 871
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	494
LweI	GCATC	4 cut(s)	153, 318, 388, 823
MaeI	CTAG	2 cut(s)	536, 749
MaeII	ACGT	3 cut(s)	306, 310, 342
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	15, 135, 193, 704, 719, 722
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	4 cut(s)	273, 362, 405, 812
MspI	CCGG	3 cut(s)	45, 114, 245
MspR9I	CCNGG	2 cut(s)	46, 115
Mva1269I	GAATGC	3 cut(s)	586, 742, 845
MwoI	GCNNNNNNNGC	3 cut(s)	595, 833, 842
NciI	CCSGG	2 cut(s)	46, 115
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	6 cut(s)	86, 218, 480, 579, 602, 871
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	2 cut(s)	480, 602
PaeI	GCATGC	1 cut(s)	602
PagI	TCATGA	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	3 cut(s)	586, 742, 845
PfeI	GAWTC	1 cut(s)	653
Pfl23II	CGTACG	1 cut(s)	307
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	307, 311
PspFI	CCCAGC	1 cut(s)	299
PspLI	CGTACG	1 cut(s)	307
PsrI	GAACNNNNNNTAC	2 cut(s)	300, 332
RsaI	GTAC	4 cut(s)	172, 305, 309, 436
RsaNI	GTAC	4 cut(s)	171, 304, 308, 435
SaqAI	TTAA	4 cut(s)	273, 362, 405, 812
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	2 cut(s)	46, 115
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	4 cut(s)	153, 318, 388, 823
SnaBI	TACGTA	2 cut(s)	307, 311
SphI	GCATGC	1 cut(s)	602
SspMI	CTAG	2 cut(s)	536, 749
StyD4I	CCNGG	2 cut(s)	44, 113
TaaI	ACNGT	2 cut(s)	513, 691
TaiI	ACGT	3 cut(s)	309, 313, 345
TaqI	TCGA	3 cut(s)	60, 129, 831
TfiI	GAWTC	1 cut(s)	653
Tru1I	TTAA	4 cut(s)	273, 362, 405, 812
Tru9I	TTAA	4 cut(s)	273, 362, 405, 812
TscAI	CASTG	3 cut(s)	534, 591, 694
TseFI	GTSAC	1 cut(s)	611
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	5 cut(s)	63, 99, 203, 437, 792
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	3 cut(s)	534, 591, 694
XapI	RAATTY	2 cut(s)	718, 779
XceI	RCATGY	2 cut(s)	480, 602
XspI	CTAG	2 cut(s)	536, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.