Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g07071 |
| malus_domestica | MD02G1074800.v1.1 MD02G1074900.v1.1 MD15G1204000.v1.1 |
| prunus_persica | Prupe.7G213300_v2.0.a1 |
| pyrus_communis | pycom02g05900 pycom15g18080 |
| rosa_chinensis | RchiOBHm_Chr2g0092971 |
| rosa_laevigata | RLG00000016354 |
| rosa_multiflora | Rmu_sc0000965.1_g000018 Rmu_sc0040761.1_g000001 Rmu_sc0040762.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00148660 |
| rosa_rugosa | Rorug02G0030700 |
| rosa_samantha | Rh2AG076800 Rh2BG078200 Rh2CG080400 Rh2DG075400 |
| rosa_wichuraiana | Rw2G006940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2795 |
| AarI | CACCTGC | 1 cut(s) | 43 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2594 |
| Acc36I | ACCTGC | 2 cut(s) | 43, 400 |
| AccB1I | GGYRCC | 1 cut(s) | 2138 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1195, 1924, 2364 |
| AccBSI | CCGCTC | 1 cut(s) | 758 |
| AccI | GTMKAC | 1 cut(s) | 953 |
| AccIII | TCCGGA | 1 cut(s) | 42 |
| AciI | CCGC | 5 cut(s) | 756, 1103, 1513, 1909, 2920 |
| AclWI | GGATC | 2 cut(s) | 425, 2255 |
| AcsI | RAATTY | 7 cut(s) | 638, 985, 1046, 1453, 2306, 2408, 2680 |
| AcuI | CTGAAG | 2 cut(s) | 732, 1798 |
| AfaI | GTAC | 7 cut(s) | 361, 494, 625, 1076, 1550, 1614, 2800 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1195, 1692, 1924, 2088, 2364 |
| AflIII | ACRYGT | 2 cut(s) | 1545, 1677 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 535 |
| AjnI | CCWGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1679, 1711 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 876, 908 |
| Alw21I | GWGCWC | 2 cut(s) | 1411, 1972 |
| Alw26I | GTCTC | 9 cut(s) | 53, 113, 221, 1067, 2056, 2327, 2363, 2614, 2844 |
| Alw44I | GTGCAC | 1 cut(s) | 1968 |
| AlwI | GGATC | 2 cut(s) | 425, 2255 |
| Ama87I | CYCGRG | 1 cut(s) | 824 |
| Aor13HI | TCCGGA | 1 cut(s) | 42 |
| AoxI | GGCC | 3 cut(s) | 305, 1143, 1597 |
| ApaLI | GTGCAC | 1 cut(s) | 1968 |
| ApeKI | GCWGC | 5 cut(s) | 161, 1271, 1912, 2184, 2423 |
| ApoI | RAATTY | 7 cut(s) | 638, 985, 1046, 1453, 2306, 2408, 2680 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1637, 1669 |
| AseI | ATTAAT | 1 cut(s) | 2534 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 902 |
| AspA2I | CCTAGG | 1 cut(s) | 1495 |
| AspS9I | GGNCC | 2 cut(s) | 1499, 1741 |
| AsuHPI | GGTGA | 7 cut(s) | 24, 797, 890, 937, 1313, 2018, 2426 |
| AvaI | CYCGRG | 1 cut(s) | 824 |
| AvaII | GGWCC | 2 cut(s) | 1499, 1741 |
| AvrII | CCTAGG | 1 cut(s) | 1495 |
| BaeGI | GKGCMC | 1 cut(s) | 1972 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 484, 517 |
| BanI | GGYRCC | 1 cut(s) | 2138 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2127, 2159 |
| Bbv12I | GWGCWC | 2 cut(s) | 1411, 1972 |
| BbvCI | CCTCAGC | 1 cut(s) | 2013 |
| BbvI | GCAGC | 5 cut(s) | 148, 1258, 1924, 2196, 2410 |
| BccI | CCATC | 7 cut(s) | 614, 784, 875, 1084, 1397, 2449, 2612 |
| BceAI | ACGGC | 1 cut(s) | 274 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1664, 1698 |
| BciT130I | CCWGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| BciVI | GTATCC | 1 cut(s) | 2364 |
| BclI | TGATCA | 2 cut(s) | 1171, 1786 |
| BcoDI | GTCTC | 9 cut(s) | 53, 113, 221, 1067, 2056, 2327, 2363, 2614, 2844 |
| BfaI | CTAG | 9 cut(s) | 309, 1016, 1257, 1400, 1496, 1581, 1635, 2378, 2666 |
| BfmI | CTRYAG | 1 cut(s) | 907 |
| BfuAI | ACCTGC | 2 cut(s) | 43, 400 |
| BfuI | GTATCC | 1 cut(s) | 2364 |
| BglII | AGATCT | 1 cut(s) | 1288 |
| BisI | GCNGC | 6 cut(s) | 162, 1272, 1910, 1913, 2185, 2424 |
| BlnI | CCTAGG | 1 cut(s) | 1495 |
| BlpI | GCTNAGC | 1 cut(s) | 1200 |
| BlsI | GCNGC | 6 cut(s) | 163, 1273, 1911, 1914, 2186, 2425 |
| Bme1390I | CCNGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| Bme18I | GGWCC | 2 cut(s) | 1499, 1741 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 535 |
| BmeT110I | CYCGRG | 1 cut(s) | 824 |
| BmgT120I | GGNCC | 2 cut(s) | 1499, 1741 |
| BmiI | GGNNCC | 3 cut(s) | 754, 1742, 2140 |
| BmrFI | CCNGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| BmrI | ACTGGG | 1 cut(s) | 734 |
| BmuI | ACTGGG | 1 cut(s) | 734 |
| BpmI | CTGGAG | 1 cut(s) | 1168 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2013 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1200 |
| BpuEI | CTTGAG | 3 cut(s) | 855, 1395, 2598 |
| Bsa29I | ATCGAT | 1 cut(s) | 1098 |
| BsaAI | YACGTR | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1094 |
| BsaJI | CCNNGG | 4 cut(s) | 1051, 1495, 1600, 2191 |
| BsaWI | WCCGGW | 2 cut(s) | 42, 2698 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2791, 2821 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1195, 1692, 1924, 2088, 2364 |
| Bse1I | ACTGG | 3 cut(s) | 658, 729, 2541 |
| Bse3DI | GCAATG | 6 cut(s) | 217, 298, 851, 1190, 1366, 1431 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1094 |
| BseAI | TCCGGA | 1 cut(s) | 42 |
| BseBI | CCWGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| BseCI | ATCGAT | 1 cut(s) | 1098 |
| BseDI | CCNNGG | 4 cut(s) | 1051, 1495, 1600, 2191 |
| BseGI | GGATG | 8 cut(s) | 357, 745, 1095, 1597, 2003, 2169, 2515, 2626 |
| BseJI | GATNNNNATC | 1 cut(s) | 1094 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1195, 1692, 1924, 2088, 2364 |
| BseMI | GCAATG | 6 cut(s) | 217, 298, 851, 1190, 1366, 1431 |
| BseMII | CTCAG | 8 cut(s) | 124, 216, 220, 245, 1191, 2004, 2222, 2442 |
| BseNI | ACTGG | 3 cut(s) | 658, 729, 2541 |
| BseRI | GAGGAG | 2 cut(s) | 1008, 2109 |
| BseSI | GKGCMC | 1 cut(s) | 1972 |
| BseXI | GCAGC | 5 cut(s) | 148, 1258, 1924, 2196, 2410 |
| BseYI | CCCAGC | 1 cut(s) | 2574 |
| BshFI | GGCC | 3 cut(s) | 307, 1145, 1599 |
| BshNI | GGYRCC | 1 cut(s) | 2138 |
| BshVI | ATCGAT | 1 cut(s) | 1098 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1411, 1972 |
| BsiHKCI | CYCGRG | 1 cut(s) | 824 |
| BsiSI | CCGG | 2 cut(s) | 43, 2699 |
| BslFI | GGGAC | 3 cut(s) | 200, 1675, 1754 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1195, 1692, 1924, 2088, 2364 |
| BsmAI | GTCTC | 9 cut(s) | 53, 113, 221, 1067, 2056, 2327, 2363, 2614, 2844 |
| BsmFI | GGGAC | 3 cut(s) | 200, 1675, 1754 |
| BsmI | GAATGC | 3 cut(s) | 853, 1009, 1476 |
| BsnI | GGCC | 3 cut(s) | 307, 1145, 1599 |
| BsoBI | CYCGRG | 1 cut(s) | 824 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1411, 1972 |
| Bsp13I | TCCGGA | 1 cut(s) | 42 |
| Bsp143I | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1200 |
| BspACI | CCGC | 5 cut(s) | 756, 1103, 1513, 1909, 2920 |
| BspANI | GGCC | 3 cut(s) | 307, 1145, 1599 |
| BspCNI | CTCAG | 8 cut(s) | 123, 217, 219, 244, 1192, 2005, 2223, 2443 |
| BspDI | ATCGAT | 1 cut(s) | 1098 |
| BspEI | TCCGGA | 1 cut(s) | 42 |
| BspHI | TCATGA | 3 cut(s) | 238, 1480, 2064 |
| BspLI | GGNNCC | 3 cut(s) | 754, 1742, 2140 |
| BspMAI | CTGCAG | 1 cut(s) | 911 |
| BspMI | ACCTGC | 2 cut(s) | 43, 400 |
| BspPI | GGATC | 2 cut(s) | 425, 2255 |
| BspT107I | GGYRCC | 1 cut(s) | 2138 |
| BsrBI | CCGCTC | 1 cut(s) | 758 |
| BsrDI | GCAATG | 6 cut(s) | 217, 298, 851, 1190, 1366, 1431 |
| BsrI | ACTGG | 3 cut(s) | 658, 729, 2541 |
| BssECI | CCNNGG | 4 cut(s) | 1051, 1495, 1600, 2191 |
| BssMI | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| BssT1I | CCWWGG | 2 cut(s) | 1495, 1600 |
| Bst2UI | CCWGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| Bst4CI | ACNGT | 7 cut(s) | 702, 808, 958, 1334, 1759, 2050, 2374 |
| Bst6I | CTCTTC | 1 cut(s) | 1751 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1100 |
| BstBAI | YACGTR | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 5 cut(s) | 708, 1810, 1864, 1879, 2182 |
| BstF5I | GGATG | 8 cut(s) | 357, 745, 1095, 1597, 2003, 2169, 2515, 2626 |
| BstKTI | GATC | 7 cut(s) | 433, 1174, 1282, 1291, 1435, 1789, 2250 |
| BstMAI | GTCTC | 9 cut(s) | 53, 113, 221, 1067, 2056, 2327, 2363, 2614, 2844 |
| BstMBI | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 170, 1100, 1151, 1715, 1799, 2111, 2440 |
| BstNI | CCWGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| BstNSI | RCATGY | 6 cut(s) | 669, 710, 1549, 1619, 1681, 2184 |
| BstSCI | CCNGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| BstSFI | CTRYAG | 1 cut(s) | 907 |
| BstSLI | GKGCMC | 1 cut(s) | 1972 |
| BstV1I | GCAGC | 5 cut(s) | 148, 1258, 1924, 2196, 2410 |
| BstX2I | RGATCY | 1 cut(s) | 1288 |
| BstYI | RGATCY | 1 cut(s) | 1288 |
| Bsu15I | ATCGAT | 1 cut(s) | 1098 |
| BsuI | GTATCC | 1 cut(s) | 2364 |
| BsuRI | GGCC | 3 cut(s) | 307, 1145, 1599 |
| BsuTUI | ATCGAT | 1 cut(s) | 1098 |
| BtsCI | GGATG | 8 cut(s) | 357, 745, 1095, 1597, 2003, 2169, 2515, 2626 |
| BtsI | GCAGTG | 1 cut(s) | 723 |
| BtsIMutI | CAGTG | 6 cut(s) | 723, 813, 1273, 1275, 2228, 2727 |
| BveI | ACCTGC | 2 cut(s) | 43, 400 |
| Cac8I | GCNNGC | 5 cut(s) | 708, 1810, 1864, 1879, 2182 |
| CciI | TCATGA | 3 cut(s) | 238, 1480, 2064 |
| Cfr13I | GGNCC | 2 cut(s) | 1499, 1741 |
| ClaI | ATCGAT | 1 cut(s) | 1098 |
| CseI | GACGC | 1 cut(s) | 1297 |
| CsiI | ACCWGGT | 1 cut(s) | 2563 |
| Csp6I | GTAC | 7 cut(s) | 360, 493, 624, 1075, 1549, 1613, 2799 |
| CviQI | GTAC | 7 cut(s) | 360, 493, 624, 1075, 1549, 1613, 2799 |
| DpnI | GATC | 7 cut(s) | 432, 1173, 1281, 1290, 1434, 1788, 2249 |
| DpnII | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| DraI | TTTAAA | 1 cut(s) | 2830 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2594 |
| DriI | GACNNNNNGTC | 1 cut(s) | 535 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2594 |
| Eam1104I | CTCTTC | 1 cut(s) | 1751 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 535 |
| EarI | CTCTTC | 1 cut(s) | 1751 |
| EciI | GGCGGA | 1 cut(s) | 1502 |
| Eco130I | CCWWGG | 2 cut(s) | 1495, 1600 |
| Eco147I | AGGCCT | 2 cut(s) | 307, 1599 |
| Eco32I | GATATC | 2 cut(s) | 2020, 2644 |
| Eco47I | GGWCC | 2 cut(s) | 1499, 1741 |
| Eco57I | CTGAAG | 2 cut(s) | 732, 1798 |
| Eco88I | CYCGRG | 1 cut(s) | 824 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1741 |
| EcoRI | GAATTC | 3 cut(s) | 1046, 1453, 2680 |
| EcoRII | CCWGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| EcoRV | GATATC | 2 cut(s) | 2020, 2644 |
| EcoT14I | CCWWGG | 2 cut(s) | 1495, 1600 |
| EcoT22I | ATGCAT | 2 cut(s) | 853, 2003 |
| ErhI | CCWWGG | 2 cut(s) | 1495, 1600 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 61, 93, 932, 964, 2700, 2732 |
| FaqI | GGGAC | 3 cut(s) | 200, 1675, 1754 |
| FbaI | TGATCA | 2 cut(s) | 1171, 1786 |
| FblI | GTMKAC | 1 cut(s) | 953 |
| Fnu4HI | GCNGC | 6 cut(s) | 162, 1272, 1910, 1913, 2185, 2424 |
| FokI | GGATG | 8 cut(s) | 364, 752, 1102, 1604, 2010, 2156, 2522, 2613 |
| Fsp4HI | GCNGC | 6 cut(s) | 162, 1272, 1910, 1913, 2185, 2424 |
| FspBI | CTAG | 9 cut(s) | 309, 1016, 1257, 1400, 1496, 1581, 1635, 2378, 2666 |
| GluI | GCNGC | 6 cut(s) | 162, 1272, 1910, 1913, 2185, 2424 |
| GsaI | CCCAGC | 1 cut(s) | 2578 |
| GsuI | CTGGAG | 1 cut(s) | 1168 |
| HaeIII | GGCC | 3 cut(s) | 307, 1145, 1599 |
| HapII | CCGG | 2 cut(s) | 43, 2699 |
| HgaI | GACGC | 1 cut(s) | 1297 |
| HincII | GTYRAC | 2 cut(s) | 2587, 2599 |
| HindII | GTYRAC | 2 cut(s) | 2587, 2599 |
| HindIII | AAGCTT | 3 cut(s) | 101, 2323, 2432 |
| HpaII | CCGG | 2 cut(s) | 43, 2699 |
| HphI | GGTGA | 7 cut(s) | 24, 797, 890, 937, 1313, 2018, 2426 |
| Hpy166II | GTNNAC | 6 cut(s) | 945, 954, 1970, 2587, 2599, 2624 |
| Hpy188I | TCNGA | 9 cut(s) | 226, 739, 897, 925, 982, 1345, 1821, 2823, 2881 |
| Hpy8I | GTNNAC | 6 cut(s) | 945, 954, 1970, 2587, 2599, 2624 |
| HpyAV | CCTTC | 9 cut(s) | 388, 869, 1523, 1826, 2095, 2129, 2170, 2201, 2794 |
| HpyCH4III | ACNGT | 7 cut(s) | 702, 808, 958, 1334, 1759, 2050, 2374 |
| HpyCH4IV | ACGT | 3 cut(s) | 340, 499, 531 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 170, 1100, 1151, 1715, 1799, 2111, 2440 |
| HpySE526I | ACGT | 3 cut(s) | 340, 499, 531 |
| Kpn2I | TCCGGA | 1 cut(s) | 42 |
| Ksp22I | TGATCA | 2 cut(s) | 1171, 1786 |
| Kzo9I | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| LmnI | GCTCC | 3 cut(s) | 1886, 1920, 2954 |
| Lsp1109I | GCAGC | 5 cut(s) | 148, 1258, 1924, 2196, 2410 |
| MabI | ACCWGGT | 1 cut(s) | 2563 |
| MaeI | CTAG | 9 cut(s) | 309, 1016, 1257, 1400, 1496, 1581, 1635, 2378, 2666 |
| MaeII | ACGT | 3 cut(s) | 340, 499, 531 |
| MaeIII | GTNAC | 7 cut(s) | 8, 30, 120, 1490, 2155, 2884, 2909 |
| MalI | GATC | 7 cut(s) | 432, 1173, 1281, 1290, 1434, 1788, 2249 |
| MbiI | CCGCTC | 1 cut(s) | 758 |
| MboI | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| MboII | GAAGA | 7 cut(s) | 72, 625, 1501, 1715, 1738, 2216, 2720 |
| MfeI | CAATTG | 1 cut(s) | 2259 |
| MflI | RGATCY | 1 cut(s) | 1288 |
| MhlI | GDGCHC | 2 cut(s) | 1411, 1972 |
| MlyI | GAGTC | 3 cut(s) | 55, 223, 2219 |
| Mph1103I | ATGCAT | 2 cut(s) | 853, 2003 |
| MroI | TCCGGA | 1 cut(s) | 42 |
| MroXI | GAANNNNTTC | 1 cut(s) | 902 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1299, 1479, 1676 |
| MspA1I | CMGCKG | 1 cut(s) | 2423 |
| MspI | CCGG | 2 cut(s) | 43, 2699 |
| MspR9I | CCNGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| MunI | CAATTG | 1 cut(s) | 2259 |
| Mva1269I | GAATGC | 3 cut(s) | 853, 1009, 1476 |
| MvaI | CCWGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 170, 1100, 1151, 1715, 1799, 2111, 2440 |
| NdeII | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| NlaIV | GGNNCC | 3 cut(s) | 754, 1742, 2140 |
| NmuCI | GTSAC | 6 cut(s) | 8, 30, 120, 1490, 2884, 2909 |
| NsiI | ATGCAT | 2 cut(s) | 853, 2003 |
| NspI | RCATGY | 6 cut(s) | 669, 710, 1549, 1619, 1681, 2184 |
| PaeI | GCATGC | 2 cut(s) | 710, 2184 |
| PagI | TCATGA | 3 cut(s) | 238, 1480, 2064 |
| PaqCI | CACCTGC | 1 cut(s) | 43 |
| PceI | AGGCCT | 2 cut(s) | 307, 1599 |
| PciI | ACATGT | 2 cut(s) | 1545, 1677 |
| PctI | GAATGC | 3 cut(s) | 853, 1009, 1476 |
| PdmI | GAANNNNTTC | 1 cut(s) | 902 |
| PfeI | GAWTC | 8 cut(s) | 184, 920, 1230, 1340, 1506, 2036, 2459, 2634 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1195, 1924, 2364 |
| PkrI | GCNGC | 6 cut(s) | 163, 1273, 1911, 1914, 2186, 2425 |
| PleI | GAGTC | 3 cut(s) | 54, 223, 2219 |
| PpsI | GAGTC | 3 cut(s) | 54, 223, 2219 |
| Ppu21I | YACGTR | 1 cut(s) | 500 |
| PpuMI | RGGWCCY | 1 cut(s) | 1741 |
| PscI | ACATGT | 2 cut(s) | 1545, 1677 |
| PshBI | ATTAAT | 1 cut(s) | 2534 |
| PsiI | TTATAA | 1 cut(s) | 2795 |
| Psp5II | RGGWCCY | 1 cut(s) | 1741 |
| Psp6I | CCWGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| PspFI | CCCAGC | 1 cut(s) | 2574 |
| PspGI | CCWGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| PspN4I | GGNNCC | 3 cut(s) | 754, 1742, 2140 |
| PspPI | GGNCC | 2 cut(s) | 1499, 1741 |
| PspPPI | RGGWCCY | 1 cut(s) | 1741 |
| PstI | CTGCAG | 1 cut(s) | 911 |
| PsuI | RGATCY | 1 cut(s) | 1288 |
| PvuII | CAGCTG | 1 cut(s) | 2423 |
| RsaI | GTAC | 7 cut(s) | 361, 494, 625, 1076, 1550, 1614, 2800 |
| RsaNI | GTAC | 7 cut(s) | 360, 493, 624, 1075, 1549, 1613, 2799 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1299, 1479, 1676 |
| SatI | GCNGC | 6 cut(s) | 162, 1272, 1910, 1913, 2185, 2424 |
| Sau3AI | GATC | 7 cut(s) | 430, 1171, 1279, 1288, 1432, 1786, 2247 |
| Sau96I | GGNCC | 2 cut(s) | 1499, 1741 |
| SchI | GAGTC | 3 cut(s) | 55, 223, 2219 |
| ScrFI | CCNGG | 6 cut(s) | 118, 304, 1052, 1147, 2192, 2565 |
| SduI | GDGCHC | 2 cut(s) | 1411, 1972 |
| SexAI | ACCWGGT | 1 cut(s) | 2563 |
| SfcI | CTRYAG | 1 cut(s) | 907 |
| SinI | GGWCC | 2 cut(s) | 1499, 1741 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1299, 1479, 1676 |
| SmlI | CTYRAG | 3 cut(s) | 870, 1410, 2613 |
| SmoI | CTYRAG | 3 cut(s) | 870, 1410, 2613 |
| SphI | GCATGC | 2 cut(s) | 710, 2184 |
| SseBI | AGGCCT | 2 cut(s) | 307, 1599 |
| SsiI | CCGC | 5 cut(s) | 756, 1103, 1513, 1909, 2920 |
| SspMI | CTAG | 9 cut(s) | 309, 1016, 1257, 1400, 1496, 1581, 1635, 2378, 2666 |
| StuI | AGGCCT | 2 cut(s) | 307, 1599 |
| StyD4I | CCNGG | 6 cut(s) | 116, 302, 1050, 1145, 2190, 2563 |
| StyI | CCWWGG | 2 cut(s) | 1495, 1600 |
| TaaI | ACNGT | 7 cut(s) | 702, 808, 958, 1334, 1759, 2050, 2374 |
| TaiI | ACGT | 3 cut(s) | 343, 502, 534 |
| TaqI | TCGA | 5 cut(s) | 681, 1098, 1527, 1641, 1674 |
| TaqII | GACCGA | 1 cut(s) | 755 |
| TatI | WGTACW | 3 cut(s) | 1074, 1548, 1612 |
| TauI | GCSGC | 1 cut(s) | 1912 |
| TfiI | GAWTC | 8 cut(s) | 184, 920, 1230, 1340, 1506, 2036, 2459, 2634 |
| TscAI | CASTG | 6 cut(s) | 723, 813, 1273, 1282, 2235, 2734 |
| TseFI | GTSAC | 6 cut(s) | 8, 30, 120, 1490, 2884, 2909 |
| TseI | GCWGC | 5 cut(s) | 161, 1271, 1912, 2184, 2423 |
| Tsp45I | GTSAC | 6 cut(s) | 8, 30, 120, 1490, 2884, 2909 |
| TspGWI | ACGGA | 2 cut(s) | 932, 2604 |
| TspRI | CASTG | 6 cut(s) | 723, 813, 1273, 1282, 2235, 2734 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1195, 1924, 2364 |
| VneI | GTGCAC | 1 cut(s) | 1968 |
| VpaK11BI | GGWCC | 2 cut(s) | 1499, 1741 |
| VspI | ATTAAT | 1 cut(s) | 2534 |
| XapI | RAATTY | 7 cut(s) | 638, 985, 1046, 1453, 2306, 2408, 2680 |
| XceI | RCATGY | 6 cut(s) | 669, 710, 1549, 1619, 1681, 2184 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 196 |
| XmaJI | CCTAGG | 1 cut(s) | 1495 |
| XmiI | GTMKAC | 1 cut(s) | 953 |
| XmnI | GAANNNNTTC | 1 cut(s) | 902 |
| XspI | CTAG | 9 cut(s) | 309, 1016, 1257, 1400, 1496, 1581, 1635, 2378, 2666 |
| Zsp2I | ATGCAT | 2 cut(s) | 853, 2003 |