Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040761.1

Orthogroup ID

OG0012559

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1311

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1310 bp

atggaatgtgacctaattgctctgggaatgtcaccgggttttcgaggcttgttactgccaatttgccaaagacccactacttattcagttcgattgcatagcaagattagtcccagtgtcaggtcattgttgctgtctagattgaagtcttattcttgtgctgctgtgaatgttgttgagtcgagcccaatcagtgatttggctcaaaaccatacccgaaaattggagactcaagtaggattagataatgggaatgtgggtgatcaggaaatagtcggagatgatgtgaaagccaggcctttcgtttggaatgggaagaagaggcttgtacggtattctgggatgcttcgtacctgtgcttcacaagggtctttgaatgaggggaaggctattcatgggcaggtgataaagaatgggatacaccctgattcgcatttgtgggtttcgttggttaatgtttactcgaaatgtggggattctgcgtatgcccgcaaagtgcttggtgagatgcctgaacgagatgttgtgtcgtggactactttaattcatgggtttgtggtcaaaggttctggtgttgatgctgttaatttgttctgtgagatgaagaaagatggtacaagagcaaatgacttttcgttggctactggtttgaaagcgtgttctttgtgcttagatttaagctttggaaagcagttgcatgctgaagcagtgaaagcggggttcttttccgatggttttgttggatctgctctcgttgatctttatgcaaaatgtggtgagatggaacttgccaatagagtgttattttgtatgcctgagcagaatgttgtatcatggaatgccctgctaaatgggtatgctaaggaaggtgatggaaatcaagttctgaaattgttttgcaaaatgactgaatcagatatgaggttaagtaagttcaccttgtctactgtccttaaaggttgtgcaaacatagaaaatttgagagtaggtcggattgtgcattctttggttgtcaaagttgggtttgaggttgatgaattcctgggttgcagtcttgttgatatgtattctaagtgtcgaatggcaattgatgcattaaaagtattcaggacgattaaagatcctgatgtagtggcctggagtgctattatcacttgccttgatcaacaaaggcaataccaggaaatggctcgactatttcattcaatgataagcacaggcatctcaccgaaccaatttaccctttctagtattattagtgctgccactgatcttggagacctccattttggtgagagcatccatgctct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 map00190 map01100 map04714

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

437

Amino Acids

47.88

Weight (kDa)

8.11

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07071
malus_domestica	MD02G1074800.v1.1 MD02G1074900.v1.1 MD15G1204000.v1.1
prunus_persica	Prupe.7G213300_v2.0.a1
pyrus_communis	pycom02g05900 pycom15g18080
rosa_chinensis	RchiOBHm_Chr2g0092971
rosa_laevigata	RLG00000016354
rosa_multiflora	Rmu_sc0000965.1_g000018 Rmu_sc0040761.1_g000001 Rmu_sc0040762.1_g000001
rosa_roxburghii	Rroxscaffold_2G00148660
rosa_rugosa	Rorug02G0030700
rosa_samantha	Rh2AG076800 Rh2BG078200 Rh2CG080400 Rh2DG075400
rosa_wichuraiana	Rw2G006940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	1 cut(s)	391
AccB7I	CCANNNNNTGG	1 cut(s)	1186
AccI	GTMKAC	1 cut(s)	944
AciI	CCGC	2 cut(s)	490, 716
AclWI	GGATC	2 cut(s)	751, 1115
AcsI	RAATTY	2 cut(s)	976, 1037
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	3 cut(s)	330, 352, 616
AfiI	CCNNNNNNNGG	3 cut(s)	120, 223, 1186
AgsI	TTSAA	4 cut(s)	145, 376, 652, 1206
AjnI	CCWGG	4 cut(s)	293, 1041, 1136, 1179
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
AluBI	AGCT	1 cut(s)	681
AluI	AGCT	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	221, 1272
AlwI	GGATC	2 cut(s)	751, 1115
AoxI	GGCC	2 cut(s)	296, 1134
ApeKI	GCWGC	2 cut(s)	161, 1262
ApoI	RAATTY	2 cut(s)	976, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	9 cut(s)	24, 272, 415, 515, 788, 881, 928, 1218, 1304
BanII	GRGCYC	1 cut(s)	188
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbvI	GCAGC	2 cut(s)	148, 1249
BccI	CCATC	4 cut(s)	605, 725, 775, 866
BciT130I	CCWGG	4 cut(s)	295, 1043, 1138, 1181
BciVI	GTATCC	1 cut(s)	411
BclI	TGATCA	2 cut(s)	262, 1162
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	221, 1272
BfaI	CTAG	2 cut(s)	138, 1248
BfuAI	ACCTGC	1 cut(s)	391
BfuI	GTATCC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	162, 1263
BlsI	GCNGC	2 cut(s)	163, 1264
Bme1390I	CCNGG	5 cut(s)	36, 295, 1043, 1138, 1181
BmrFI	CCNGG	5 cut(s)	36, 295, 1043, 1138, 1181
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	5 cut(s)	333, 498, 568, 1081, 1230
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	1159
Bpu10I	CCTNAGC	2 cut(s)	816, 861
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	876
BsaI	GGTCTC	1 cut(s)	1272
BsaJI	CCNNGG	1 cut(s)	1042
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 223, 1186
Bse1I	ACTGG	2 cut(s)	114, 649
Bse8I	GATNNNNATC	1 cut(s)	876
BseBI	CCWGG	4 cut(s)	295, 1043, 1138, 1181
BseDI	CCNNGG	1 cut(s)	1042
BseGI	GGATG	2 cut(s)	348, 1299
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	3 cut(s)	120, 223, 1186
BseMII	CTCAG	1 cut(s)	807
BseNI	ACTGG	2 cut(s)	114, 649
BseXI	GCAGC	2 cut(s)	148, 1249
BshFI	GGCC	2 cut(s)	298, 1136
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	120, 223, 1186
BsmAI	GTCTC	2 cut(s)	221, 1272
BsmFI	GGGAC	1 cut(s)	96
BsmI	GAATGC	2 cut(s)	844, 1000
BsnI	GGCC	2 cut(s)	298, 1136
Bso31I	GGTCTC	1 cut(s)	1272
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
BspACI	CCGC	2 cut(s)	490, 716
BspANI	GGCC	2 cut(s)	298, 1136
BspCNI	CTCAG	1 cut(s)	808
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	2 cut(s)	751, 1115
BspTNI	GGTCTC	1 cut(s)	1272
BsrI	ACTGG	2 cut(s)	114, 649
BssECI	CCNNGG	1 cut(s)	1042
BssMI	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
Bst2UI	CCWGG	4 cut(s)	295, 1043, 1138, 1181
Bst4CI	ACNGT	2 cut(s)	333, 949
Bst6I	CTCTTC	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	1091
BstC8I	GCNNGC	2 cut(s)	490, 699
BstDEI	CTNAG	4 cut(s)	670, 816, 861, 1071
BstF5I	GGATG	2 cut(s)	348, 1299
BstKTI	GATC	6 cut(s)	265, 746, 760, 1123, 1165, 1273
BstMAI	GTCTC	2 cut(s)	221, 1272
BstMBI	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
BstMWI	GCNNNNNNNGC	3 cut(s)	713, 1091, 1142
BstNI	CCWGG	4 cut(s)	295, 1043, 1138, 1181
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	5 cut(s)	34, 293, 1041, 1136, 1179
BstV1I	GCAGC	2 cut(s)	148, 1249
BstX2I	RGATCY	2 cut(s)	743, 1120
BstYI	RGATCY	2 cut(s)	743, 1120
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	298, 1136
BtsCI	GGATG	2 cut(s)	348, 1299
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	4 cut(s)	121, 199, 714, 1266
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	490, 699
Csp6I	GTAC	3 cut(s)	329, 351, 615
CspCI	CAANNNNNGTGG	2 cut(s)	1255, 1290
CviAII	CATG	5 cut(s)	395, 548, 698, 834, 1304
CviQI	GTAC	3 cut(s)	329, 351, 615
DdeI	CTNAG	4 cut(s)	670, 816, 861, 1071
DpnI	GATC	6 cut(s)	264, 745, 759, 1122, 1164, 1272
DpnII	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	1272
Eco57I	CTGAAG	1 cut(s)	723
EcoRI	GAATTC	1 cut(s)	1037
EcoRII	CCWGG	4 cut(s)	293, 1041, 1136, 1179
EcoT22I	ATGCAT	1 cut(s)	1096
EcoT38I	GRGCYC	1 cut(s)	188
FaeI	CATG	5 cut(s)	398, 551, 701, 837, 1307
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	394, 547, 697, 833, 1303
FauI	CCCGC	2 cut(s)	497, 709
FbaI	TGATCA	2 cut(s)	262, 1162
FblI	GTMKAC	1 cut(s)	944
Fnu4HI	GCNGC	2 cut(s)	162, 1263
FokI	GGATG	2 cut(s)	355, 1286
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	162, 1263
FspBI	CTAG	2 cut(s)	138, 1248
GluI	GCNGC	2 cut(s)	162, 1263
GsuI	CTGGAG	1 cut(s)	1159
HaeIII	GGCC	2 cut(s)	298, 1136
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	5 cut(s)	398, 551, 701, 837, 1307
HindIII	AAGCTT	1 cut(s)	679
HinfI	GANTC	5 cut(s)	179, 229, 428, 476, 911
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	9 cut(s)	24, 272, 415, 515, 788, 881, 928, 1218, 1304
Hpy166II	GTNNAC	4 cut(s)	460, 534, 936, 945
Hpy188I	TCNGA	5 cut(s)	278, 730, 888, 916, 993
Hpy188III	TCNNGA	4 cut(s)	138, 266, 1108, 1124
Hpy8I	GTNNAC	4 cut(s)	460, 534, 936, 945
HpyAV	CCTTC	2 cut(s)	379, 860
HpyCH4III	ACNGT	2 cut(s)	333, 949
HpyCH4V	TGCA	8 cut(s)	97, 697, 767, 900, 965, 1000, 1050, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	713, 1091, 1142
HpyF3I	CTNAG	4 cut(s)	670, 816, 861, 1071
Hsp92II	CATG	5 cut(s)	398, 551, 701, 837, 1307
Ksp22I	TGATCA	2 cut(s)	262, 1162
Kzo9I	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
Lsp1109I	GCAGC	2 cut(s)	148, 1249
LweI	GCATC	5 cut(s)	333, 498, 568, 1081, 1230
MaeI	CTAG	2 cut(s)	138, 1248
MaeIII	GTNAC	3 cut(s)	8, 30, 51
MalI	GATC	6 cut(s)	264, 745, 759, 1122, 1164, 1272
MboI	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
MboII	GAAGA	3 cut(s)	328, 331, 616
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	2 cut(s)	743, 1120
MhlI	GDGCHC	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	188, 223
MmeI	TCCRAC	3 cut(s)	256, 721, 971
MnlI	CCTC	6 cut(s)	38, 315, 373, 915, 1021, 1292
Mph1103I	ATGCAT	1 cut(s)	1096
MseI	TTAA	8 cut(s)	453, 542, 585, 677, 926, 954, 1097, 1116
MslI	CAYNNNNRTG	1 cut(s)	1290
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	5 cut(s)	36, 295, 1043, 1138, 1181
MunI	CAATTG	1 cut(s)	1086
Mva1269I	GAATGC	2 cut(s)	844, 1000
MvaI	CCWGG	4 cut(s)	295, 1043, 1138, 1181
MwoI	GCNNNNNNNGC	3 cut(s)	713, 1091, 1142
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
NlaIII	CATG	5 cut(s)	398, 551, 701, 837, 1307
NmuCI	GTSAC	2 cut(s)	8, 30
NsiI	ATGCAT	1 cut(s)	1096
NspI	RCATGY	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	298
PctI	GAATGC	2 cut(s)	844, 1000
PfeI	GAWTC	3 cut(s)	428, 476, 911
PflMI	CCANNNNNTGG	1 cut(s)	1186
PkrI	GCNGC	2 cut(s)	163, 1264
PleI	GAGTC	2 cut(s)	187, 223
PpsI	GAGTC	2 cut(s)	187, 223
Psp6I	CCWGG	4 cut(s)	293, 1041, 1136, 1179
PspGI	CCWGG	4 cut(s)	293, 1041, 1136, 1179
PsuI	RGATCY	2 cut(s)	743, 1120
RsaI	GTAC	3 cut(s)	330, 352, 616
RsaNI	GTAC	3 cut(s)	329, 351, 615
RseI	CAYNNNNRTG	1 cut(s)	1290
SaqAI	TTAA	8 cut(s)	453, 542, 585, 677, 926, 954, 1097, 1116
SatI	GCNGC	2 cut(s)	162, 1263
Sau3AI	GATC	6 cut(s)	262, 743, 757, 1120, 1162, 1270
SchI	GAGTC	2 cut(s)	188, 223
ScrFI	CCNGG	5 cut(s)	36, 295, 1043, 1138, 1181
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	5 cut(s)	333, 498, 568, 1081, 1230
SmiMI	CAYNNNNRTG	1 cut(s)	1290
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	701
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	490, 716
SspMI	CTAG	2 cut(s)	138, 1248
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	5 cut(s)	34, 293, 1041, 1136, 1179
TaaI	ACNGT	2 cut(s)	333, 949
TaqI	TCGA	6 cut(s)	43, 91, 182, 464, 1078, 1192
TfiI	GAWTC	3 cut(s)	428, 476, 911
Tru1I	TTAA	8 cut(s)	453, 542, 585, 677, 926, 954, 1097, 1116
Tru9I	TTAA	8 cut(s)	453, 542, 585, 677, 926, 954, 1097, 1116
TscAI	CASTG	4 cut(s)	121, 199, 714, 1273
TseFI	GTSAC	2 cut(s)	8, 30
TseI	GCWGC	2 cut(s)	161, 1262
Tsp45I	GTSAC	2 cut(s)	8, 30
TspDTI	ATGAA	5 cut(s)	383, 536, 617, 1050, 1190
TspRI	CASTG	4 cut(s)	121, 199, 714, 1273
Van91I	CCANNNNNTGG	1 cut(s)	1186
XapI	RAATTY	2 cut(s)	976, 1037
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	944
XspI	CTAG	2 cut(s)	138, 1248
Zsp2I	ATGCAT	1 cut(s)	1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.