MD02G1240700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014793
Physical Location & Seq
Reverse (-)
28915696 .. 28916529
834 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1240700.v1.1.491

Sequence Viewer

Length: 777 bp
ATGCGCTCAGTCGCGTGCACTGAGAGAGGGGTAGCAGATTCACACCTGCGCTATCAAGACCGGGCTAGTTTTGTGCAATGCGTACGTGATAACACTCTTATGAGGGGTTATGATGTTTGTGGGGTTATGAAATGGGTCCGCATGGTGTTTGATGAAAGTCCTCAGAGAGACTTGGTTTCGTGGACTACGCTTGCTCAAGGTTATGTTAAAATGGGGTTTCCAAGAGAAGACGTTGAAGTGTTTTTCGATATGTGTGATGCTGAAACAAGGGCAGATGAGACGATGTCAGTCATCGTTCTCTCTGCTTGCTCTAAACTGGGAGACTTGAGCTTAAGCAATGCGTTGGTCGATAGGTACTTGAAGTGTGGGGATGCCGACTTTGCAAGTAAAGTTTTCAATGCGATGCCTGTGAGAAATGTGGTTTTGTGGAATTCGATGATATCGGGTTTGGCACATCAAGGGAAATTTAAGGAGGCGTTGGACGTGTTCCGAGAGATGCAAAAAAGGTGTCTTGAACCAGATGAGGTGACATATATTGGAGTCCTTGCAGCATGTAGTCATGGAGGACTTGTCGCAGAGGAGCAGAGGTATTTTAGGGAGATGTCAAGTGTGTACAAGCTCAGACCTCAGACGGAGCATTATGGCTGCACAGTTGACCTATTAGGCCGTGCCGGGTTAATGAACGAGGCAGAGGAGTTTGTTGAAAACATGCCAACTGAGCCTGATGCCTTTGTTTGGGGCGCCCTTTTGGGGCCTGTAGGATCCATGGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

259

Amino Acids

29.04

Weight (kDa)

4.99

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 138 - 186 1e-14 PPR repeat family
PPR_1 PF12854 138 - 167 2.1e-06 PPR repeat
PPR PF01535 141 - 169 2e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 54
Acc36I ACCTGC 1 cut(s) 54
AccB1I GGYRCC 1 cut(s) 740
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 139
AclWI GGATC 2 cut(s) 756, 769
AcsI RAATTY 2 cut(s) 430, 464
AcyI GRCGYC 1 cut(s) 741
AfaI GTAC 3 cut(s) 84, 356, 614
AfiI CCNNNNNNNGG 2 cut(s) 735, 750
AflII CTTAAG 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 5 cut(s) 236, 361, 397, 515, 704
AjiI CACGTC 1 cut(s) 484
AluBI AGCT 2 cut(s) 330, 619
AluI AGCT 2 cut(s) 330, 619
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 3 cut(s) 162, 272, 315
Alw44I GTGCAC 1 cut(s) 16
AlwI GGATC 2 cut(s) 756, 769
AoxI GGCC 2 cut(s) 664, 752
ApaLI GTGCAC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 548, 645
ApoI RAATTY 2 cut(s) 430, 464
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AspLEI GCGC 3 cut(s) 6, 51, 743
AspS9I GGNCC 2 cut(s) 136, 752
AsuC2I CCSGG 2 cut(s) 62, 673
AsuHPI GGTGA 1 cut(s) 538
AvaII GGWCC 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 20
BamHI GGATCC 1 cut(s) 761
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 560, 632
BceAI ACGGC 1 cut(s) 651
BcnI CCSGG 2 cut(s) 62, 673
BcoDI GTCTC 3 cut(s) 162, 272, 315
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 1 cut(s) 744
BfrI CTTAAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 549, 646
BlsI GCNGC 2 cut(s) 550, 647
Bme1390I CCNGG 2 cut(s) 62, 673
Bme18I GGWCC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 136, 752
BmiI GGNNCC 4 cut(s) 137, 742, 753, 763
BmrFI CCNGG 2 cut(s) 62, 673
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 5 cut(s) 247, 361, 393, 486, 715
BmuI ACTGGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 234
BpuEI CTTGAG 2 cut(s) 180, 346
BpuMI CCSGG 2 cut(s) 62, 673
BsaAI YACGTR 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 765
BsaXI ACNNNNNCTCC 4 cut(s) 555, 572, 585, 602
Bsc4I CCNNNNNNNGG 2 cut(s) 735, 750
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 2 cut(s) 83, 343
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 2 cut(s) 735, 750
BseMI GCAATG 2 cut(s) 83, 343
BseMII CTCAG 6 cut(s) 12, 21, 176, 634, 641, 708
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 593, 707
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 2 cut(s) 560, 632
BsgI GTGCAG 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 666, 754
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 2 cut(s) 61, 672
BsiWI CGTACG 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 735, 750
BsmAI GTCTC 3 cut(s) 162, 272, 315
BsmBI CGTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 666, 754
Bsp1286I GDGCHC 1 cut(s) 20
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 1 cut(s) 761
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 1 cut(s) 139
BspANI GGCC 2 cut(s) 666, 754
BspCNI CTCAG 6 cut(s) 13, 20, 175, 633, 640, 709
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 4 cut(s) 137, 742, 753, 763
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 2 cut(s) 756, 769
BspT107I GGYRCC 1 cut(s) 740
BspTI CTTAAG 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 83, 343
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 1 cut(s) 761
BssNI GRCGYC 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 652
BstACI GRCGYC 1 cut(s) 741
BstAFI CTTAAG 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 16, 192, 307
BstDEI CTNAG 6 cut(s) 7, 21, 162, 620, 627, 717
BstDSI CCRYGG 1 cut(s) 765
BstF5I GGATG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 3 cut(s) 6, 51, 743
BstKTI GATC 1 cut(s) 764
BstMAI GTCTC 3 cut(s) 162, 272, 315
BstMBI GATC 1 cut(s) 761
BstMWI GCNNNNNNNGC 2 cut(s) 380, 718
BstNSI RCATGY 2 cut(s) 555, 712
BstSCI CCNGG 2 cut(s) 60, 671
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 20
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 560, 632
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
BsuRI GGCC 2 cut(s) 666, 754
BtgI CCRYGG 1 cut(s) 765
BtgZI GCGATG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 16, 192, 307
CfoI GCGC 3 cut(s) 6, 51, 743
Cfr13I GGNCC 2 cut(s) 136, 752
Csp6I GTAC 3 cut(s) 83, 355, 613
CviAII CATG 5 cut(s) 142, 552, 560, 709, 766
CviJI RGCY 7 cut(s) 65, 330, 619, 645, 666, 721, 754
CviKI_1 RGCY 7 cut(s) 65, 330, 619, 645, 666, 721, 754
CviQI GTAC 3 cut(s) 83, 355, 613
DdeI CTNAG 6 cut(s) 7, 21, 162, 620, 627, 717
DinI GGCGCC 1 cut(s) 742
DpnI GATC 1 cut(s) 763
DpnII GATC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 765
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 430
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 765
EgeI GGCGCC 1 cut(s) 742
EheI GGCGCC 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 5 cut(s) 145, 555, 563, 712, 769
FatI CATG 5 cut(s) 141, 551, 559, 708, 765
Fnu4HI GCNGC 2 cut(s) 549, 646
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 549, 646
FspBI CTAG 1 cut(s) 66
GlaI GCGC 3 cut(s) 5, 50, 742
GluI GCNGC 2 cut(s) 549, 646
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 2 cut(s) 666, 754
HapII CCGG 2 cut(s) 61, 672
HhaI GCGC 3 cut(s) 6, 51, 743
Hin1I GRCGYC 1 cut(s) 741
Hin1II CATG 5 cut(s) 145, 555, 563, 712, 769
Hin6I GCGC 3 cut(s) 4, 49, 741
HinP1I GCGC 3 cut(s) 4, 49, 741
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 2 cut(s) 38, 540
HpaII CCGG 2 cut(s) 61, 672
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 4 cut(s) 18, 183, 613, 655
Hpy188I TCNGA 4 cut(s) 165, 491, 623, 630
Hpy188III TCNNGA 2 cut(s) 56, 512
Hpy8I GTNNAC 4 cut(s) 18, 183, 613, 655
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 3 cut(s) 85, 231, 483
HpyCH4V TGCA 6 cut(s) 18, 76, 383, 499, 548, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 718
HpyF3I CTNAG 6 cut(s) 7, 21, 162, 620, 627, 717
HpySE526I ACGT 3 cut(s) 85, 231, 483
Hsp92I GRCGYC 1 cut(s) 741
Hsp92II CATG 5 cut(s) 145, 555, 563, 712, 769
HspAI GCGC 3 cut(s) 4, 49, 741
KasI GGCGCC 1 cut(s) 740
Kzo9I GATC 1 cut(s) 761
LmnI GCTCC 2 cut(s) 580, 634
LpnPI CCDG 8 cut(s) 59, 74, 302, 420, 531, 685, 735, 768
Lsp1109I GCAGC 2 cut(s) 560, 632
LweI GCATC 5 cut(s) 247, 361, 393, 486, 715
MaeI CTAG 1 cut(s) 66
MaeII ACGT 3 cut(s) 85, 231, 483
MaeIII GTNAC 1 cut(s) 526
MalI GATC 1 cut(s) 763
MboI GATC 1 cut(s) 761
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 430, 464
Mly113I GGCGCC 1 cut(s) 741
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 1 cut(s) 459
MseI TTAA 4 cut(s) 207, 332, 468, 677
MslI CAYNNNNRTG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 331
MspI CCGG 2 cut(s) 61, 672
MspR9I CCNGG 2 cut(s) 62, 673
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 380, 718
NarI GGCGCC 1 cut(s) 741
NciI CCSGG 2 cut(s) 62, 673
NcoI CCATGG 1 cut(s) 765
NdeII GATC 1 cut(s) 761
NlaIII CATG 5 cut(s) 145, 555, 563, 712, 769
NlaIV GGNNCC 4 cut(s) 137, 742, 753, 763
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 2 cut(s) 555, 712
PaqCI CACCTGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 38
Pfl23II CGTACG 1 cut(s) 82
PflFI GACNNNGTC 1 cut(s) 283
PkrI GCNGC 2 cut(s) 550, 647
PleI GAGTC 1 cut(s) 548
PluTI GGCGCC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 86
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 4 cut(s) 137, 742, 753, 763
PspPI GGNCC 2 cut(s) 136, 752
PsuI RGATCY 1 cut(s) 761
PsyI GACNNNGTC 1 cut(s) 283
RsaI GTAC 3 cut(s) 84, 356, 614
RsaNI GTAC 3 cut(s) 83, 355, 613
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 4 cut(s) 207, 332, 468, 677
SatI GCNGC 2 cut(s) 549, 646
Sau3AI GATC 1 cut(s) 761
Sau96I GGNCC 2 cut(s) 136, 752
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 2 cut(s) 62, 673
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 5 cut(s) 247, 361, 393, 486, 715
SfcI CTRYAG 1 cut(s) 756
SfoI GGCGCC 1 cut(s) 742
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 195, 325, 331
SmoI CTYRAG 3 cut(s) 195, 325, 331
Sse9I AATT 2 cut(s) 430, 464
SsiI CCGC 1 cut(s) 139
SspDI GGCGCC 1 cut(s) 740
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 60, 671
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 3 cut(s) 88, 234, 486
TaqI TCGA 3 cut(s) 246, 348, 434
TasI AATT 2 cut(s) 430, 464
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 4 cut(s) 207, 332, 468, 677
Tru9I TTAA 4 cut(s) 207, 332, 468, 677
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 2 cut(s) 548, 645
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 143, 168, 695
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 1 cut(s) 25
Tth111I GACNNNGTC 1 cut(s) 283
Vha464I CTTAAG 1 cut(s) 331
VneI GTGCAC 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 2 cut(s) 430, 464
XceI RCATGY 2 cut(s) 555, 712
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.