Rh1AG150700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014793
Physical Location & Seq
Forward (+)
28313986 .. 28316699
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG150700.1

Sequence Viewer

Length: 1836 bp
ATGAACTCCCAAGAGTTATGGGTGCATGCTTATAGCAGACTCAGATCATGCAAATCAATAAGCATAACTCATCTCAAACAAACCCACACATTTCTCATCAAAACAAGGCCTCTTCCTCTTCCTCTCCCAACCCAACACCTCATCTACCCTAAACTCATTTCTTCTACTCATCACAACAACAACCTCACCTACATTCTCTCCTTCTTAAACCACTTGGACAAGCCAGACCTCTGCCTCAGCCTCTACAATGCCATCATCCAAGGCCTCCCTTCCAATCCCACAAACAAAACCACGTCCCTTCTTCAAGTGCTTGAACTACTTCGGCATATGCTCCTCAATGGCCTCCTTCCTGACCACTACACTGTCCCCTCTGTGCTCAAAGCGTGTGCACAGTGCCGTGCGCTGAGAGAAGGCCAGCAAATCCACGCCTATGCAATCAAATCCGGACTCGTTTTGTCCAATGTGTACGTCAACAACACAATCATGAGGCTCTACGCAGTTTGTGGGATTGTAAATTACGTCCGGAAGGTGTTCGACGAAAGTCCCCAGAGGGACTTGGTATCTTGGACTACTCTTATTCAGGGATATGTTAAAATGGGCCTGGCCAGGGAAGGCGTGGAGGCCTTCTTTGATATGTGTGATGCGAAAATGAGGCCCGATGAGATGACATTGGTCATTGTGCTCTCTGCTTGCTCTAAATTGGGAGACTTGAGCTTGGGTAGGAAGATAAGTAGGTACATTGATGATAACAGGGTTTACCCAGATGTTTATATAGGCAATGCATTGGTTAATATGTACTTGGAGTGTGGCGATGCTGAGCTTGCACGTGGAGTGTTTGATGGGATGGCTGTGAGAAATGTGGTTTCTTGGAATTCCATGATATCTGGCTTGGCGCATCAAGGGAAGTATAAGGAGGCGTTGGATGTGTTCCAGGAGATGCAAAGAATCGGTCTTGAACCGGATGATGTTACTTTAGTTGGTGTTTTGAATTCGTGCGCGAATCTTGGAGTGCTCGAGTTGGGGAAGTGGGTGCATGCTTATGTTGATAGGAATCAGATTGAGGCTGATGGGTATATAGGGAATGCGCTTGTGGATATGTATGCTAAGTGTGGAAGCATAGACCGGGCATTCAGGGTGTTTCAAGGCATGAAACGGAGAGATGTGTATTCGTATACTGCGATGATTGTTGGATTAGCTATGCATGGGGAAGTGGAGGTGGCATTGGATATATTTTGTGAGATGCCTAGAATGGGCATTCAACCAGATGAGGTTACATTTGTAGGTGTCCTTGCAGCTTGTAGTCATGGAGGACTAGTGGCAGAGGGTCAGAAGTATTTCAGGGATATGTCAACTGTGTACAATCTTAGACCTCAGACAGAGCATTACGGATGCATGGTTGACCTTTTAGGTCGTGCTGGGTTAATAAATGAGGCAGAGGAGTTTGTTAATAACATGCCAATTGAGCCTGATGCCTTTGTCTGGGGGGCACTATTGGGAGCTTGCAGGATACATGGGAAAGTAGAGCTTGCTGAAACTGTGATGAAGAAGCTATTGAAGATAGAGCCAGAGAGAGATGGTGCATTCGTACTCATGTCCAATATATATTCTTCTGCAAATAAATGGAGGAATGCAGTGCAGTTGAGAAGGGAAATGAAAGAAAAGAACATGACGAAAACTCCTGGCTGTAGTTCAATTGAACTTGAAGGTGTTGTTCATGAATTCAGAAAGGGTGACAAATCACATAAAAGAAGTAAACACATATACAAATTGCTAGACGAGATCATGAGCCACGTAAAGGATTATGGGGTTTTGGCTCACAGATGTACATTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

611

Amino Acids

68.84

Weight (kDa)

7.84

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 185 - 233 1.2e-07 PPR repeat family
PPR_2 PF13041 285 - 334 1e-13 PPR repeat family
PPR_1 PF12854 285 - 314 8.6e-06 PPR repeat
PPR PF01535 288 - 318 7e-10 PPR repeat
PPR_2 PF13041 386 - 434 5.6e-11 PPR repeat family
PPR PF01535 389 - 419 2.7e-06 PPR repeat
E_motif PF20431 504 - 566 8.6e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1172
AccII CGCG 1 cut(s) 998
AccIII TCCGGA 2 cut(s) 443, 522
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 3 cut(s) 871, 988, 1718
AcvI CACGTG 1 cut(s) 827
AfaI GTAC 6 cut(s) 467, 737, 797, 1358, 1587, 1825
AfiI CCNNNNNNNGG 4 cut(s) 607, 1250, 1479, 1795
AhlI ACTAGT 1 cut(s) 1312
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 4 cut(s) 600, 605, 930, 1678
AluBI AGCT 7 cut(s) 714, 820, 1196, 1295, 1499, 1525, 1549
AluI AGCT 7 cut(s) 714, 820, 1196, 1295, 1499, 1525, 1549
Alw21I GWGCWC 4 cut(s) 378, 391, 684, 1014
Alw26I GTCTC 1 cut(s) 699
Alw44I GTGCAC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 1013
Aor13HI TCCGGA 2 cut(s) 443, 522
AoxI GGCC 8 cut(s) 107, 262, 340, 412, 598, 603, 621, 653
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 1292
ApoI RAATTY 3 cut(s) 871, 988, 1718
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
Asp700I GAANNNNTTC 3 cut(s) 318, 530, 1334
AspLEI GCGC 4 cut(s) 403, 895, 998, 1087
AspS9I GGNCC 2 cut(s) 598, 654
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 2 cut(s) 178, 1742
AvaI CYCGRG 1 cut(s) 1013
BaeGI GKGCMC 2 cut(s) 391, 1489
BalI TGGCCA 1 cut(s) 605
BbrPI CACGTG 1 cut(s) 827
Bbv12I GWGCWC 4 cut(s) 378, 391, 684, 1014
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 1304
BccI CCATC 5 cut(s) 260, 833, 838, 1061, 1568
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 4 cut(s) 602, 607, 932, 1680
BciVI GTATCC 1 cut(s) 1500
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 1 cut(s) 699
BcuI ACTAGT 1 cut(s) 1312
BfaI CTAG 3 cut(s) 1245, 1313, 1772
BfmI CTRYAG 1 cut(s) 1684
BfuI GTATCC 1 cut(s) 1500
BisI GCNGC 1 cut(s) 1293
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 1 cut(s) 1294
Bme1390I CCNGG 5 cut(s) 602, 607, 932, 1124, 1680
BmeT110I CYCGRG 1 cut(s) 1013
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 598, 654
BmrFI CCNGG 5 cut(s) 602, 607, 932, 1124, 1680
BmsI GCATC 7 cut(s) 631, 802, 904, 927, 1230, 1379, 1459
BoxI GACNNNNGTC 2 cut(s) 540, 671
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 2 cut(s) 827, 1792
BsaBI GATNNNNATC 1 cut(s) 1050
BsaJI CCNNGG 2 cut(s) 259, 606
BsaWI WCCGGW 3 cut(s) 443, 522, 958
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 1299, 1329, 1660, 1690
Bsc4I CCNNNNNNNGG 4 cut(s) 607, 1250, 1479, 1795
Bse3DI GCAATG 1 cut(s) 784
Bse8I GATNNNNATC 1 cut(s) 1050
BseAI TCCGGA 2 cut(s) 443, 522
BseBI CCWGG 4 cut(s) 602, 607, 932, 1680
BseDI CCNNGG 2 cut(s) 259, 606
BseGI GGATG 5 cut(s) 255, 849, 928, 967, 1394
BseJI GATNNNNATC 1 cut(s) 1050
BseLI CCNNNNNNNGG 4 cut(s) 607, 1250, 1479, 1795
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 5 cut(s) 55, 250, 395, 807, 1385
BseRI GAGGAG 2 cut(s) 323, 1451
BseSI GKGCMC 2 cut(s) 391, 1489
BseXI GCAGC 1 cut(s) 1304
BseYI CCCAGC 1 cut(s) 1415
BsgI GTGCAG 1 cut(s) 1655
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 8 cut(s) 109, 264, 342, 414, 600, 605, 623, 655
BsiHKAI GWGCWC 4 cut(s) 378, 391, 684, 1014
BsiHKCI CYCGRG 1 cut(s) 1013
BsiSI CCGG 4 cut(s) 444, 523, 959, 1123
BslFI GGGAC 4 cut(s) 280, 350, 528, 566
BslI CCNNNNNNNGG 4 cut(s) 607, 1250, 1479, 1795
BsmAI GTCTC 1 cut(s) 699
BsmFI GGGAC 4 cut(s) 280, 350, 528, 566
BsmI GAATGC 5 cut(s) 1087, 1127, 1254, 1580, 1633
BsnI GGCC 8 cut(s) 109, 264, 342, 414, 600, 605, 623, 655
BsoBI CYCGRG 1 cut(s) 1013
Bsp1286I GDGCHC 5 cut(s) 378, 391, 684, 1014, 1489
Bsp13I TCCGGA 2 cut(s) 443, 522
Bsp1407I TGTACA 2 cut(s) 1356, 1823
Bsp143I GATC 2 cut(s) 44, 1779
Bsp1720I GCTNAGC 1 cut(s) 816
BspANI GGCC 8 cut(s) 109, 264, 342, 414, 600, 605, 623, 655
BspCNI CTCAG 5 cut(s) 54, 249, 396, 808, 1384
BspEI TCCGGA 2 cut(s) 443, 522
BspFNI CGCG 1 cut(s) 998
BspHI TCATGA 3 cut(s) 483, 1714, 1782
BsrDI GCAATG 1 cut(s) 784
BsrGI TGTACA 2 cut(s) 1356, 1823
BssECI CCNNGG 2 cut(s) 259, 606
BssMI GATC 2 cut(s) 44, 1779
BssNAI GTATAC 1 cut(s) 1173
BssT1I CCWWGG 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 1173
Bst2UI CCWGG 4 cut(s) 602, 607, 932, 1680
Bst4CI ACNGT 4 cut(s) 364, 393, 1354, 1537
Bst6I CTCTTC 2 cut(s) 117, 123
BstAUI TGTACA 2 cut(s) 1356, 1823
BstBAI YACGTR 2 cut(s) 827, 1792
BstC8I GCNNGC 7 cut(s) 27, 416, 691, 822, 1035, 1501, 1527
BstDEI CTNAG 7 cut(s) 41, 236, 404, 816, 1104, 1364, 1371
BstF5I GGATG 5 cut(s) 255, 849, 928, 967, 1394
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 4 cut(s) 403, 895, 998, 1087
BstKTI GATC 2 cut(s) 47, 1782
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 2 cut(s) 44, 1779
BstMWI GCNNNNNNNGC 2 cut(s) 821, 1462
BstNI CCWGG 4 cut(s) 602, 607, 932, 1680
BstNSI RCATGY 3 cut(s) 29, 1037, 1456
BstPAI GACNNNNGTC 2 cut(s) 540, 671
BstSCI CCNGG 5 cut(s) 600, 605, 930, 1122, 1678
BstSFI CTRYAG 1 cut(s) 1684
BstSLI GKGCMC 2 cut(s) 391, 1489
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 1 cut(s) 1304
BstZ17I GTATAC 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 1500
BsuRI GGCC 8 cut(s) 109, 264, 342, 414, 600, 605, 623, 655
BtgZI GCGATG 2 cut(s) 825, 1193
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 5 cut(s) 255, 849, 928, 967, 1394
BtsI GCAGTG 1 cut(s) 1638
BtsIMutI CAGTG 3 cut(s) 360, 398, 1638
Cac8I GCNNGC 7 cut(s) 27, 416, 691, 822, 1035, 1501, 1527
CciI TCATGA 3 cut(s) 483, 1714, 1782
CfoI GCGC 4 cut(s) 403, 895, 998, 1087
Cfr13I GGNCC 2 cut(s) 598, 654
Csp6I GTAC 6 cut(s) 466, 736, 796, 1357, 1586, 1824
CviQI GTAC 6 cut(s) 466, 736, 796, 1357, 1586, 1824
DdeI CTNAG 7 cut(s) 41, 236, 404, 816, 1104, 1364, 1371
DpnI GATC 2 cut(s) 46, 1781
DpnII GATC 2 cut(s) 44, 1779
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 117, 123
EarI CTCTTC 2 cut(s) 117, 123
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 3 cut(s) 109, 264, 623
Eco32I GATATC 1 cut(s) 882
Eco72I CACGTG 1 cut(s) 827
Eco88I CYCGRG 1 cut(s) 1013
EcoRI GAATTC 3 cut(s) 871, 988, 1718
EcoRII CCWGG 4 cut(s) 600, 605, 930, 1678
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 3 cut(s) 784, 1203, 1394
ErhI CCWWGG 1 cut(s) 259
FalI AAGNNNNNCTT 2 cut(s) 1509, 1541
FaqI GGGAC 4 cut(s) 280, 350, 528, 566
FauNDI CATATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 1172
Fnu4HI GCNGC 1 cut(s) 1293
FokI GGATG 5 cut(s) 242, 856, 935, 974, 1401
Fsp4HI GCNGC 1 cut(s) 1293
FspBI CTAG 3 cut(s) 1245, 1313, 1772
GlaI GCGC 4 cut(s) 402, 894, 997, 1086
GluI GCNGC 1 cut(s) 1293
GsaI CCCAGC 1 cut(s) 1419
HaeIII GGCC 8 cut(s) 109, 264, 342, 414, 600, 605, 623, 655
HapII CCGG 4 cut(s) 444, 523, 959, 1123
HhaI GCGC 4 cut(s) 403, 895, 998, 1087
Hin6I GCGC 4 cut(s) 401, 893, 996, 1085
HinP1I GCGC 4 cut(s) 401, 893, 996, 1085
HincII GTYRAC 3 cut(s) 472, 1350, 1399
HindII GTYRAC 3 cut(s) 472, 1350, 1399
HinfI GANTC 5 cut(s) 39, 447, 945, 1000, 1051
HpaII CCGG 4 cut(s) 444, 523, 959, 1123
HphI GGTGA 2 cut(s) 178, 1742
Hpy166II GTNNAC 9 cut(s) 389, 466, 472, 757, 1173, 1350, 1357, 1399, 1754
Hpy188I TCNGA 5 cut(s) 44, 1056, 1329, 1374, 1724
Hpy188III TCNNGA 7 cut(s) 350, 444, 484, 523, 953, 1715, 1783
Hpy8I GTNNAC 9 cut(s) 389, 466, 472, 757, 1173, 1350, 1357, 1399, 1754
Hpy99I CGWCG 1 cut(s) 539
HpyCH4III ACNGT 4 cut(s) 364, 393, 1354, 1537
HpyCH4IV ACGT 5 cut(s) 293, 468, 519, 826, 1791
HpyF10VI GCNNNNNNNGC 2 cut(s) 821, 1462
HpyF3I CTNAG 7 cut(s) 41, 236, 404, 816, 1104, 1364, 1371
HpySE526I ACGT 5 cut(s) 293, 468, 519, 826, 1791
HspAI GCGC 4 cut(s) 401, 893, 996, 1085
Kpn2I TCCGGA 2 cut(s) 443, 522
Kzo9I GATC 2 cut(s) 44, 1779
LmnI GCTCC 2 cut(s) 336, 1496
Lsp1109I GCAGC 1 cut(s) 1304
LweI GCATC 7 cut(s) 631, 802, 904, 927, 1230, 1379, 1459
MaeI CTAG 3 cut(s) 1245, 1313, 1772
MaeII ACGT 5 cut(s) 293, 468, 519, 826, 1791
MaeIII GTNAC 3 cut(s) 967, 1270, 1730
MalI GATC 2 cut(s) 46, 1781
MboI GATC 2 cut(s) 44, 1779
MboII GAAGA 8 cut(s) 104, 110, 153, 293, 736, 1555, 1567, 1599
MfeI CAATTG 2 cut(s) 1458, 1692
MhlI GDGCHC 5 cut(s) 378, 391, 684, 1014, 1489
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 8 cut(s) 514, 698, 871, 988, 1458, 1692, 1718, 1766
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 2 cut(s) 33, 441
MmeI TCCRAC 2 cut(s) 900, 1168
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 3 cut(s) 784, 1203, 1394
MroI TCCGGA 2 cut(s) 443, 522
MroXI GAANNNNTTC 3 cut(s) 318, 530, 1334
MscI TGGCCA 1 cut(s) 605
MseI TTAA 5 cut(s) 206, 591, 789, 1421, 1446
MslI CAYNNNNRTG 3 cut(s) 429, 482, 1038
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 4 cut(s) 444, 523, 959, 1123
MspR9I CCNGG 5 cut(s) 602, 607, 932, 1124, 1680
MunI CAATTG 2 cut(s) 1458, 1692
Mva1269I GAATGC 5 cut(s) 1087, 1127, 1254, 1580, 1633
MvaI CCWGG 4 cut(s) 602, 607, 932, 1680
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 2 cut(s) 821, 1462
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 1 cut(s) 327
NdeII GATC 2 cut(s) 44, 1779
NmuCI GTSAC 1 cut(s) 1730
NsiI ATGCAT 3 cut(s) 784, 1203, 1394
NspI RCATGY 3 cut(s) 29, 1037, 1456
PaeI GCATGC 2 cut(s) 29, 1037
PaeR7I CTCGAG 1 cut(s) 1013
PagI TCATGA 3 cut(s) 483, 1714, 1782
PceI AGGCCT 3 cut(s) 109, 264, 623
PcsI WCGNNNNNNNCGW 1 cut(s) 1175
PctI GAATGC 5 cut(s) 1087, 1127, 1254, 1580, 1633
PdmI GAANNNNTTC 3 cut(s) 318, 530, 1334
PfeI GAWTC 3 cut(s) 945, 1000, 1051
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 1 cut(s) 1294
PleI GAGTC 2 cut(s) 33, 441
PmaCI CACGTG 1 cut(s) 827
PmlI CACGTG 1 cut(s) 827
PpsI GAGTC 2 cut(s) 33, 441
Ppu21I YACGTR 2 cut(s) 827, 1792
PshAI GACNNNNGTC 2 cut(s) 540, 671
Psp6I CCWGG 4 cut(s) 600, 605, 930, 1678
PspCI CACGTG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 1415
PspGI CCWGG 4 cut(s) 600, 605, 930, 1678
PspPI GGNCC 2 cut(s) 598, 654
PspXI VCTCGAGB 1 cut(s) 1013
RsaI GTAC 6 cut(s) 467, 737, 797, 1358, 1587, 1825
RsaNI GTAC 6 cut(s) 466, 736, 796, 1357, 1586, 1824
RseI CAYNNNNRTG 3 cut(s) 429, 482, 1038
SaqAI TTAA 5 cut(s) 206, 591, 789, 1421, 1446
SatI GCNGC 1 cut(s) 1293
Sau3AI GATC 2 cut(s) 44, 1779
Sau96I GGNCC 2 cut(s) 598, 654
SchI GAGTC 2 cut(s) 33, 441
ScrFI CCNGG 5 cut(s) 602, 607, 932, 1124, 1680
SduI GDGCHC 5 cut(s) 378, 391, 684, 1014, 1489
SfaNI GCATC 7 cut(s) 631, 802, 904, 927, 1230, 1379, 1459
SfcI CTRYAG 1 cut(s) 1684
Sfr274I CTCGAG 1 cut(s) 1013
SlaI CTCGAG 1 cut(s) 1013
SmiMI CAYNNNNRTG 3 cut(s) 429, 482, 1038
SmlI CTYRAG 2 cut(s) 709, 1013
SmoI CTYRAG 2 cut(s) 709, 1013
SpeI ACTAGT 1 cut(s) 1312
SphI GCATGC 2 cut(s) 29, 1037
Sse9I AATT 8 cut(s) 514, 698, 871, 988, 1458, 1692, 1718, 1766
SseBI AGGCCT 3 cut(s) 109, 264, 623
SspMI CTAG 3 cut(s) 1245, 1313, 1772
StuI AGGCCT 3 cut(s) 109, 264, 623
StyD4I CCNGG 5 cut(s) 600, 605, 930, 1122, 1678
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 4 cut(s) 364, 393, 1354, 1537
TaiI ACGT 5 cut(s) 296, 471, 522, 829, 1794
TaqI TCGA 2 cut(s) 534, 1014
TaqII GACCGA 1 cut(s) 938
TasI AATT 8 cut(s) 514, 698, 871, 988, 1458, 1692, 1718, 1766
TatI WGTACW 3 cut(s) 795, 1356, 1823
TfiI GAWTC 3 cut(s) 945, 1000, 1051
Tru1I TTAA 5 cut(s) 206, 591, 789, 1421, 1446
Tru9I TTAA 5 cut(s) 206, 591, 789, 1421, 1446
TscAI CASTG 3 cut(s) 367, 398, 1638
TseFI GTSAC 1 cut(s) 1730
TseI GCWGC 1 cut(s) 1292
Tsp45I GTSAC 1 cut(s) 1730
TspDTI ATGAA 6 cut(s) 17, 1163, 1556, 1667, 1703, 1731
TspGWI ACGGA 2 cut(s) 1168, 1401
TspRI CASTG 3 cut(s) 367, 398, 1638
VneI GTGCAC 1 cut(s) 387
XapI RAATTY 3 cut(s) 871, 988, 1718
XceI RCATGY 3 cut(s) 29, 1037, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XhoI CTCGAG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 1172
XmnI GAANNNNTTC 3 cut(s) 318, 530, 1334
XspI CTAG 3 cut(s) 1245, 1313, 1772
Zsp2I ATGCAT 3 cut(s) 784, 1203, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.