pycom02g20580

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014793
Physical Location & Seq
Reverse (-)
18657402 .. 18658126
725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20580.2

Sequence Viewer

Length: 678 bp
ATGTACTTGAAGTGTGGGGATGCCGACTTTGCAAGTAAAGTTTTCAATGAGATGCCTGTGAGAAATGTGGTTTTCTGGAATTCGATGATATCGGGTTTGGCACATCAAGGGAAATTTAAGGAGGCGTTGTACATGTTCCGAGGGATGCAAAAAAGGGGTCTTGAACCAGATGAGGTGACATATATTGGAGTCCTTGCAGCATGTAGTCATGGAGGACTTGTCGCAGAGGATCAGAGGTATTTTAGGGAGATGTCAAGCGTGTACAAGCTCAGACCTCAGACGGAGCATTATGGCTGCACAGTTGACCTATTAGGCCGTGCCGGGTTAATAAACGAGGCCGAGGAGTTTGTTGAAAACATGCCAACTGAGCCTGATGTAGAGCTTGCTGAAAGTGTGATGAAGGAACTAGTGAAGGTAGAGCTCGAGAGAGATGGCGCATATGTGCTGATGTCAAATATTCATTCCTCCGCAAATAGATGGAGGGATGCAGTGAAGTTGAGATGGGCGATGAAGGGAAAGAACGTGAAGAAAACTCCCTGGTGTGGTTCAATCGAGCTTGATGGTATTGTTCATGAATTCAAAGAGGGTGGCAAATCACATAAAACAAGCAAAGGCATATACAAATTGCTGGAAGAGATTATGAGCCACGTAAAGAACCACGAGCTTTTGGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

226

Amino Acids

25.59

Weight (kDa)

6.51

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 468
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 3 cut(s) 79, 113, 575
AfaI GTAC 3 cut(s) 5, 131, 263
AfiI CCNNNNNNNGG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 6 cut(s) 10, 46, 164, 353, 549, 580
AhlI ACTAGT 1 cut(s) 406
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 5 cut(s) 268, 382, 421, 556, 664
AluI AGCT 5 cut(s) 268, 382, 421, 556, 664
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 2 cut(s) 313, 336
ApeKI GCWGC 2 cut(s) 197, 294
ApoI RAATTY 3 cut(s) 79, 113, 575
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AspLEI GCGC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 422
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 209, 281
BccI CCATC 4 cut(s) 425, 471, 495, 554
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 538
BcnI CCSGG 1 cut(s) 322
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 1 cut(s) 407
BisI GCNGC 2 cut(s) 198, 295
BlsI GCNGC 2 cut(s) 199, 296
Bme1390I CCNGG 2 cut(s) 322, 538
BmeT110I CYCGRG 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 322, 538
BmsI GCATC 4 cut(s) 10, 42, 135, 475
BpuMI CCSGG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 649
BsaJI CCNNGG 3 cut(s) 139, 339, 536
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 3 cut(s) 139, 339, 536
BseGI GGATG 3 cut(s) 25, 150, 490
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 3 cut(s) 283, 290, 357
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 209, 281
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 315, 338
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 542
BsnI GGCC 2 cut(s) 315, 338
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 423
Bsp1407I TGTACA 2 cut(s) 129, 261
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 468
BspANI GGCC 2 cut(s) 315, 338
BspCNI CTCAG 3 cut(s) 282, 289, 358
BspHI TCATGA 1 cut(s) 571
BspPI GGATC 1 cut(s) 237
BsrGI TGTACA 2 cut(s) 129, 261
BssECI CCNNGG 3 cut(s) 139, 339, 536
BssMI GATC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 659
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 627
BstAUI TGTACA 2 cut(s) 129, 261
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 3 cut(s) 269, 276, 366
BstF5I GGATG 3 cut(s) 25, 150, 490
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 29, 367
BstNI CCWGG 1 cut(s) 538
BstNSI RCATGY 3 cut(s) 136, 204, 361
BstSCI CCNGG 2 cut(s) 320, 536
BstV1I GCAGC 2 cut(s) 209, 281
BsuRI GGCC 2 cut(s) 315, 338
BtgZI GCGATG 1 cut(s) 521
BtsCI GGATG 3 cut(s) 25, 150, 490
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 495, 673
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 437
Csp6I GTAC 3 cut(s) 4, 130, 262
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 5 cut(s) 133, 201, 209, 358, 572
CviQI GTAC 3 cut(s) 4, 130, 262
DdeI CTNAG 3 cut(s) 269, 276, 366
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 421
Eco88I CYCGRG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 421
EcoRI GAATTC 2 cut(s) 79, 575
EcoRII CCWGG 1 cut(s) 536
EcoRV GATATC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 5 cut(s) 136, 204, 212, 361, 575
FatI CATG 5 cut(s) 132, 200, 208, 357, 571
FauNDI CATATG 1 cut(s) 439
Fnu4HI GCNGC 2 cut(s) 198, 295
FokI GGATG 3 cut(s) 32, 157, 497
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 2 cut(s) 198, 295
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 436
GluI GCNGC 2 cut(s) 198, 295
HaeIII GGCC 2 cut(s) 315, 338
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 437
Hin1II CATG 5 cut(s) 136, 204, 212, 361, 575
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 262, 304
Hpy188I TCNGA 4 cut(s) 140, 234, 272, 279
Hpy188III TCNNGA 4 cut(s) 76, 161, 424, 572
Hpy8I GTNNAC 2 cut(s) 262, 304
HpyAV CCTTC 3 cut(s) 394, 406, 505
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 522, 648
HpyCH4V TGCA 5 cut(s) 32, 148, 197, 297, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 367
HpyF3I CTNAG 3 cut(s) 269, 276, 366
HpySE526I ACGT 2 cut(s) 522, 648
Hsp92II CATG 5 cut(s) 136, 204, 212, 361, 575
HspAI GCGC 1 cut(s) 435
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 8 cut(s) 61, 69, 180, 334, 384, 523, 550, 614
Lsp1109I GCAGC 2 cut(s) 209, 281
LweI GCATC 4 cut(s) 10, 42, 135, 475
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 522, 648
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 538, 644
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 4 cut(s) 79, 113, 575, 623
MlyI GAGTC 1 cut(s) 198
MseI TTAA 2 cut(s) 117, 326
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 322, 538
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 2 cut(s) 29, 367
NciI CCSGG 1 cut(s) 322
NdeI CATATG 1 cut(s) 439
NdeII GATC 1 cut(s) 229
NlaIII CATG 5 cut(s) 136, 204, 212, 361, 575
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 3 cut(s) 136, 204, 361
PaeR7I CTCGAG 1 cut(s) 422
PagI TCATGA 1 cut(s) 571
PciI ACATGT 1 cut(s) 132
PkrI GCNGC 2 cut(s) 199, 296
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 649
PscI ACATGT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 536
PspGI CCWGG 1 cut(s) 536
RsaI GTAC 3 cut(s) 5, 131, 263
RsaNI GTAC 3 cut(s) 4, 130, 262
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 117, 326
SatI GCNGC 2 cut(s) 198, 295
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 322, 538
SduI GDGCHC 1 cut(s) 423
SfaNI GCATC 4 cut(s) 10, 42, 135, 475
Sfr274I CTCGAG 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 4 cut(s) 79, 113, 575, 623
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 457
SspMI CTAG 1 cut(s) 407
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 320, 536
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 525, 651
TaqI TCGA 3 cut(s) 83, 423, 552
TasI AATT 4 cut(s) 79, 113, 575, 623
TatI WGTACW 3 cut(s) 3, 129, 261
Tru1I TTAA 2 cut(s) 117, 326
Tru9I TTAA 2 cut(s) 117, 326
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 2 cut(s) 197, 294
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 5 cut(s) 413, 449, 524, 560, 588
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 495
XapI RAATTY 3 cut(s) 79, 113, 575
XceI RCATGY 3 cut(s) 136, 204, 361
XhoI CTCGAG 1 cut(s) 422
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.