Rorug01G0130200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014793
Physical Location & Seq
Reverse (-)
22105546 .. 22106780
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0130200.1

Sequence Viewer

Length: 279 bp
ATGGTTCGATCTTATGTTGAGAAGCCTAATAGCATCATACTAGCAATATCTCCAGCCAACCAATCGCTACATCTGATGCTACCGAACTTGCATGGGAAGTGGATGCAGCAGGAATTGAGACGGTTTCCGACTCTGCAAGCTGAAATAGCTGCTGCAGCTAATGAAGCATTGGAAAGGTTCCGTGATGAGAGTAAGAAGGCAGCTCTGCGCTTAGTGGACATGGAATCCTCATACTTGACTGTGCATCTCTTTCGAAGACTTCCACAGGAAGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

92

Amino Acids

10.64

Weight (kDa)

8.16

Isoelectric Point (pI)

68.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_M PF01031 24 - 80 5.1e-06 Dynamin central region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 4 cut(s) 140, 149, 158, 203
AluI AGCT 4 cut(s) 140, 149, 158, 203
Alw26I GTCTC 1 cut(s) 112
ApeKI GCWGC 5 cut(s) 106, 149, 152, 155, 200
AspLEI GCGC 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 5 cut(s) 118, 136, 139, 167, 212
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 5 cut(s) 107, 150, 153, 156, 201
BlsI GCNGC 5 cut(s) 108, 151, 154, 157, 202
BmiI GGNNCC 1 cut(s) 179
BmsI GCATC 4 cut(s) 42, 66, 93, 253
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 253
BseGI GGATG 1 cut(s) 108
BseXI GCAGC 5 cut(s) 118, 136, 139, 167, 212
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 253
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 2 cut(s) 123, 241
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 146, 155, 164
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 5 cut(s) 118, 136, 139, 167, 212
BstV2I GAAGAC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 210
CviAII CATG 2 cut(s) 92, 220
CviJI RGCY 6 cut(s) 25, 56, 140, 149, 158, 203
CviKI_1 RGCY 6 cut(s) 25, 56, 140, 149, 158, 203
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 2 cut(s) 95, 223
FaiI YATR 5 cut(s) 15, 38, 93, 221, 232
FatI CATG 2 cut(s) 91, 219
Fnu4HI GCNGC 5 cut(s) 107, 150, 153, 156, 201
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 5 cut(s) 107, 150, 153, 156, 201
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 209
GluI GCNGC 5 cut(s) 107, 150, 153, 156, 201
GsuI CTGGAG 1 cut(s) 36
HhaI GCGC 1 cut(s) 210
Hin1II CATG 2 cut(s) 95, 223
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 130, 224
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 75, 129
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 123, 241
HpyCH4V TGCA 5 cut(s) 91, 106, 136, 155, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 155, 164
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 2 cut(s) 95, 223
HspAI GCGC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 3 cut(s) 66, 95, 251
Lsp1109I GCAGC 5 cut(s) 118, 136, 139, 167, 212
LweI GCATC 4 cut(s) 42, 66, 93, 253
MaeI CTAG 1 cut(s) 41
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 267
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 146, 155, 164
NdeII GATC 1 cut(s) 8
NlaIII CATG 2 cut(s) 95, 223
NlaIV GGNNCC 1 cut(s) 179
NspV TTCGAA 1 cut(s) 253
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 5 cut(s) 108, 151, 154, 157, 202
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 157
SatI GCNGC 5 cut(s) 107, 150, 153, 156, 201
Sau3AI GATC 1 cut(s) 8
SchI GAGTC 1 cut(s) 124
SetI ASST 5 cut(s) 142, 151, 160, 179, 205
SfaNI GCATC 4 cut(s) 42, 66, 93, 253
SfcI CTRYAG 1 cut(s) 153
SfuI TTCGAA 1 cut(s) 253
SgeI CNNG 9 cut(s) 53, 65, 100, 104, 122, 149, 194, 232, 247
Sse9I AATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 123, 241
TaqI TCGA 2 cut(s) 7, 253
TasI AATT 1 cut(s) 113
TfiI GAWTC 1 cut(s) 224
TseI GCWGC 5 cut(s) 106, 149, 152, 155, 200
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 1 cut(s) 170
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.