Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g07400 |
| malus_domestica | MD02G1240700.v1.1 MD07G1076300.v1.1 |
| prunus_persica | Prupe.2G097100_v2.0.a1 |
| pyrus_communis | pycom02g20580 pycom07g06010 |
| rosa_chinensis | RchiOBHm_Chr1g0337001 |
| rosa_laevigata | RLG00000029313 |
| rosa_multiflora | Rmu_sc0009742.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00315060 |
| rosa_rugosa | Rorug01G0129900 Rorug01G0130000 Rorug01G0130200 |
| rosa_samantha | Rh1AG150700 Rh1BG119100 Rh1CG141900 |
| rosa_wichuraiana | Rw1G012320 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 657 |
| AccI | GTMKAC | 1 cut(s) | 140 |
| AclWI | GGATC | 1 cut(s) | 767 |
| AcoI | YGGCCR | 1 cut(s) | 847 |
| AcsI | RAATTY | 2 cut(s) | 109, 127 |
| AcuI | CTGAAG | 1 cut(s) | 884 |
| AdeI | CACNNNGTG | 1 cut(s) | 421 |
| AfaI | GTAC | 1 cut(s) | 472 |
| AgsI | TTSAA | 6 cut(s) | 109, 117, 127, 258, 298, 878 |
| AjiI | CACGTC | 1 cut(s) | 830 |
| AleI | CACNNNNGTG | 1 cut(s) | 351 |
| AluBI | AGCT | 3 cut(s) | 163, 822, 888 |
| AluI | AGCT | 3 cut(s) | 163, 822, 888 |
| Alw21I | GWGCWC | 1 cut(s) | 835 |
| AlwI | GGATC | 1 cut(s) | 767 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 89, 343 |
| AoxI | GGCC | 2 cut(s) | 695, 847 |
| ApoI | RAATTY | 2 cut(s) | 109, 127 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 243, 869 |
| AsuHPI | GGTGA | 1 cut(s) | 334 |
| BbsI | GAAGAC | 1 cut(s) | 655 |
| Bbv12I | GWGCWC | 1 cut(s) | 835 |
| BccI | CCATC | 3 cut(s) | 313, 319, 916 |
| BclI | TGATCA | 2 cut(s) | 702, 763 |
| BmgBI | CACGTC | 1 cut(s) | 830 |
| BmsI | GCATC | 2 cut(s) | 529, 843 |
| BpiI | GAAGAC | 1 cut(s) | 655 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 889, 921 |
| Bpu10I | CCTNAGC | 2 cut(s) | 164, 857 |
| BpuEI | CTTGAG | 1 cut(s) | 819 |
| BsaAI | YACGTR | 1 cut(s) | 374 |
| Bse118I | RCCGGY | 1 cut(s) | 845 |
| Bse1I | ACTGG | 1 cut(s) | 124 |
| Bse3DI | GCAATG | 1 cut(s) | 739 |
| BseMI | GCAATG | 1 cut(s) | 739 |
| BseMII | CTCAG | 2 cut(s) | 471, 871 |
| BseNI | ACTGG | 1 cut(s) | 124 |
| BseRI | GAGGAG | 1 cut(s) | 532 |
| BseYI | CCCAGC | 1 cut(s) | 557 |
| BsgI | GTGCAG | 1 cut(s) | 329 |
| BshFI | GGCC | 2 cut(s) | 697, 849 |
| BsiHKAI | GWGCWC | 1 cut(s) | 835 |
| BsiSI | CCGG | 1 cut(s) | 846 |
| BsmI | GAATGC | 1 cut(s) | 559 |
| BsnI | GGCC | 2 cut(s) | 697, 849 |
| Bsp1286I | GDGCHC | 1 cut(s) | 835 |
| Bsp143I | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| BspANI | GGCC | 2 cut(s) | 697, 849 |
| BspCNI | CTCAG | 2 cut(s) | 470, 870 |
| BspPI | GGATC | 1 cut(s) | 767 |
| BsrDI | GCAATG | 1 cut(s) | 739 |
| BsrFI | RCCGGY | 1 cut(s) | 845 |
| BsrI | ACTGG | 1 cut(s) | 124 |
| BssAI | RCCGGY | 1 cut(s) | 845 |
| BssMI | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| Bst4CI | ACNGT | 8 cut(s) | 19, 36, 74, 98, 228, 253, 353, 601 |
| Bst6I | CTCTTC | 2 cut(s) | 324, 491 |
| BstBAI | YACGTR | 1 cut(s) | 374 |
| BstDEI | CTNAG | 3 cut(s) | 164, 457, 857 |
| BstKTI | GATC | 7 cut(s) | 69, 415, 451, 671, 705, 766, 775 |
| BstMBI | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstV2I | GAAGAC | 1 cut(s) | 655 |
| BstX2I | RGATCY | 1 cut(s) | 772 |
| BstYI | RGATCY | 1 cut(s) | 772 |
| BsuRI | GGCC | 2 cut(s) | 697, 849 |
| BtrI | CACGTC | 1 cut(s) | 830 |
| BtsI | GCAGTG | 1 cut(s) | 747 |
| BtsIMutI | CAGTG | 5 cut(s) | 32, 103, 358, 618, 747 |
| CaiI | CAGNNNCTG | 2 cut(s) | 89, 343 |
| Cfr10I | RCCGGY | 1 cut(s) | 845 |
| CseI | GACGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 1 cut(s) | 471 |
| CviAII | CATG | 3 cut(s) | 136, 306, 781 |
| CviJI | RGCY | 8 cut(s) | 163, 689, 697, 759, 822, 849, 862, 888 |
| CviKI_1 | RGCY | 8 cut(s) | 163, 689, 697, 759, 822, 849, 862, 888 |
| CviQI | GTAC | 1 cut(s) | 471 |
| DdeI | CTNAG | 3 cut(s) | 164, 457, 857 |
| DpnI | GATC | 7 cut(s) | 68, 414, 450, 670, 704, 765, 774 |
| DpnII | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| DraIII | CACNNNGTG | 1 cut(s) | 421 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 657 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 657 |
| EaeI | YGGCCR | 1 cut(s) | 847 |
| Eam1104I | CTCTTC | 2 cut(s) | 324, 491 |
| EarI | CTCTTC | 2 cut(s) | 324, 491 |
| Eco57I | CTGAAG | 1 cut(s) | 884 |
| EcoRI | GAATTC | 1 cut(s) | 127 |
| FaeI | CATG | 3 cut(s) | 139, 309, 784 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 857, 889 |
| FatI | CATG | 3 cut(s) | 135, 305, 780 |
| FauNDI | CATATG | 1 cut(s) | 612 |
| FbaI | TGATCA | 2 cut(s) | 702, 763 |
| FblI | GTMKAC | 1 cut(s) | 140 |
| GsaI | CCCAGC | 1 cut(s) | 561 |
| HaeIII | GGCC | 2 cut(s) | 697, 849 |
| HapII | CCGG | 1 cut(s) | 846 |
| HgaI | GACGC | 1 cut(s) | 275 |
| Hin1II | CATG | 3 cut(s) | 139, 309, 784 |
| HincII | GTYRAC | 2 cut(s) | 141, 311 |
| HindII | GTYRAC | 2 cut(s) | 141, 311 |
| HindIII | AAGCTT | 2 cut(s) | 820, 886 |
| HinfI | GANTC | 4 cut(s) | 80, 86, 340, 547 |
| HpaII | CCGG | 1 cut(s) | 846 |
| HphI | GGTGA | 1 cut(s) | 334 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 141, 311 |
| Hpy188I | TCNGA | 6 cut(s) | 85, 210, 279, 435, 460, 552 |
| Hpy188III | TCNNGA | 4 cut(s) | 64, 200, 416, 836 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 141, 311 |
| HpyCH4III | ACNGT | 8 cut(s) | 19, 36, 74, 98, 228, 253, 353, 601 |
| HpyCH4IV | ACGT | 2 cut(s) | 373, 829 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 346, 371, 542, 752 |
| HpyF3I | CTNAG | 3 cut(s) | 164, 457, 857 |
| HpySE526I | ACGT | 2 cut(s) | 373, 829 |
| Hsp92II | CATG | 3 cut(s) | 139, 309, 784 |
| Ksp22I | TGATCA | 2 cut(s) | 702, 763 |
| Kzo9I | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| LmnI | GCTCC | 1 cut(s) | 729 |
| LpnPI | CCDG | 9 cut(s) | 105, 164, 350, 543, 638, 731, 844, 859, 863 |
| LweI | GCATC | 2 cut(s) | 529, 843 |
| MaeII | ACGT | 2 cut(s) | 373, 829 |
| MaeIII | GTNAC | 1 cut(s) | 745 |
| MalI | GATC | 7 cut(s) | 68, 414, 450, 670, 704, 765, 774 |
| MboI | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| MboII | GAAGA | 6 cut(s) | 341, 508, 660, 678, 851, 877 |
| MfeI | CAATTG | 1 cut(s) | 878 |
| MflI | RGATCY | 1 cut(s) | 772 |
| MhlI | GDGCHC | 1 cut(s) | 835 |
| MluCI | AATT | 4 cut(s) | 109, 127, 393, 878 |
| MlyI | GAGTC | 2 cut(s) | 334, 556 |
| MnlI | CCTC | 3 cut(s) | 510, 679, 891 |
| MroXI | GAANNNNTTC | 2 cut(s) | 243, 869 |
| MslI | CAYNNNNRTG | 1 cut(s) | 351 |
| MspI | CCGG | 1 cut(s) | 846 |
| MunI | CAATTG | 1 cut(s) | 878 |
| Mva1269I | GAATGC | 1 cut(s) | 559 |
| NdeI | CATATG | 1 cut(s) | 612 |
| NdeII | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| NlaIII | CATG | 3 cut(s) | 139, 309, 784 |
| NmeAIII | GCCGAG | 1 cut(s) | 673 |
| NmuCI | GTSAC | 1 cut(s) | 745 |
| NspI | RCATGY | 1 cut(s) | 309 |
| OliI | CACNNNNGTG | 1 cut(s) | 351 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 379, 388 |
| PctI | GAATGC | 1 cut(s) | 559 |
| PdmI | GAANNNNTTC | 2 cut(s) | 243, 869 |
| PfeI | GAWTC | 2 cut(s) | 80, 86 |
| PleI | GAGTC | 2 cut(s) | 334, 555 |
| PpsI | GAGTC | 2 cut(s) | 334, 555 |
| Ppu21I | YACGTR | 1 cut(s) | 374 |
| PspFI | CCCAGC | 1 cut(s) | 557 |
| PstNI | CAGNNNCTG | 2 cut(s) | 89, 343 |
| PsuI | RGATCY | 1 cut(s) | 772 |
| RsaI | GTAC | 1 cut(s) | 472 |
| RsaNI | GTAC | 1 cut(s) | 471 |
| RseI | CAYNNNNRTG | 1 cut(s) | 351 |
| SalI | GTCGAC | 1 cut(s) | 139 |
| Sau3AI | GATC | 7 cut(s) | 66, 412, 448, 668, 702, 763, 772 |
| SchI | GAGTC | 2 cut(s) | 334, 556 |
| SduI | GDGCHC | 1 cut(s) | 835 |
| SetI | ASST | 7 cut(s) | 165, 296, 376, 583, 824, 832, 890 |
| SfaNI | GCATC | 2 cut(s) | 529, 843 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 1 cut(s) | 834 |
| SmoI | CTYRAG | 1 cut(s) | 834 |
| Sse9I | AATT | 4 cut(s) | 109, 127, 393, 878 |
| TaaI | ACNGT | 8 cut(s) | 19, 36, 74, 98, 228, 253, 353, 601 |
| TaiI | ACGT | 2 cut(s) | 376, 832 |
| TaqI | TCGA | 3 cut(s) | 65, 140, 451 |
| TasI | AATT | 4 cut(s) | 109, 127, 393, 878 |
| TatI | WGTACW | 1 cut(s) | 470 |
| TfiI | GAWTC | 2 cut(s) | 80, 86 |
| TscAI | CASTG | 5 cut(s) | 39, 103, 358, 625, 754 |
| TseFI | GTSAC | 1 cut(s) | 745 |
| Tsp45I | GTSAC | 1 cut(s) | 745 |
| TspDTI | ATGAA | 5 cut(s) | 204, 252, 372, 420, 600 |
| TspRI | CASTG | 5 cut(s) | 39, 103, 358, 625, 754 |
| XapI | RAATTY | 2 cut(s) | 109, 127 |
| XceI | RCATGY | 1 cut(s) | 309 |
| XmiI | GTMKAC | 1 cut(s) | 140 |
| XmnI | GAANNNNTTC | 2 cut(s) | 243, 869 |