RLG00000029313

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014793
Physical Location & Seq
Reverse (-)
36404633 .. 36406527
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029313

Sequence Viewer

Length: 1551 bp
ATGAACTCCCAAGAGTTATGGGTGCATGCTTATAGCAGACTCAGATCATGCAAATCAATAAGCATAACTCATCTCAAACAAACCCACACATTTCTCATCAAAACAAGGCCTCTTCCTCTTCCTCTCCCAACCCAACACCTCATCTACCCTAAACTCATTTCTTCTACTCATCACAACAACAACCTCACCTACATTCTCTCCTTCTTAAACCACTTGGACAAGCCTGACCTCTGCCTCAGCCTCTACAATGCCATCATCCAAGGCCTCCCTTCCAATCCCACAAACAAAACCACCTCGCTTCTTCAAGTGCTTGAACTACTTCGGCATATGCTCCTCAATGGCCTCCTTCCTGACCACTACACTGTTCCCTCTGTGCTCAAAGCGTGTGCACAGTGCCGTGCGCTGAGAGAAGGCCAGCAAATCCACGCCTATGCAATCAAATCCGGACTCGTTTTGTCCAATGTGTACGTCAACAACACAATCATGAGGCTCTACGCAGTTTGTGGGATTGTAAATTACGTCCGGAAGGTGTTCGACGAAAGTCCCCAGAGGGACTTGGTATCTTGGACTACTCTTATTCAGGGCTATGTCAAAATGGGTCTGGCCAGGGAAGGCGTGGAGGCCTTCTTTGAGATGTGTGATGCGAAAATGAGGCCGGATGAGATGACATTGGTAATTGTGCTCTCTGCTTGCTCTAAATTGGGAGACTTGAGCTTGGGTAGGAAGATAAGTAGGTACATTGATGATAATGGGGTTTACCCTGATGTTTTTATTGGCAACGCGTTGGTTAATATGTACTTGGAGTGCGGCGATGCTGAGCTTGCACGTGGAGTGTTTGATGGGATGCCTGTGAGAAATGTGGTTTCTTGGAATTCCATGATATCTGGCTTGGCGCATCAAGGGAAGTATAAGGAGGCGTTGGATGTGTTCCAGGAGATGCAAAGAATCGGTCTTGAGCCGGATGATGTTACTTTAGTTGGTGTTTTGAATTCGTGCGCGAATCTTGGAGTGCTTGAGTTGGGGAAGTGGGTACATGCTTATGTTGATCGGAATGAGATTGAGGCTGATGGGTATATAGGGAATGCGCTTGTGGATATGTATGCTAAGTGTGGAAGCATAGACCGGGCATTCAGGGTGTTTCAAGGCATGAAACGGAGAGATGTGTATTCGTATACTGCGATGATTGTTGGATTAGCTATGCATGGGGAAGTGGAGGTGGCATTGGATATATTTTCTGAGATGCCTAGAATGGGCATTCAACCTGATGAGGTTACATTTGTAGGTGTCCTTGCAGCTTGTAGTCATGGAGGACTAGTGGCAGGGGGTCAGAAGTATTTCAGGGATATGTCAACTGTGTACAATCTTAGACCTCAGACAGAGCATTACGGATGCATGGTTGACCTTTTAGGTCGTGCTGGGTTAATAAATGAGGCAGAGGAGTTTGTTAATAACATGCCAATTGAGCCTGATGCCTTTAAGTACATTCTTTTGATAGTTGGAGGCATATCTTTTGATAGTTGGAGGCATATCAACAGACAATTGTTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

517

Amino Acids

57.91

Weight (kDa)

6.47

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 185 - 233 6.3e-08 PPR repeat family
PPR_2 PF13041 285 - 334 8.2e-14 PPR repeat family
PPR_1 PF12854 285 - 314 7e-06 PPR repeat
PPR PF01535 288 - 318 5.7e-10 PPR repeat
PPR_2 PF13041 386 - 434 3.5e-11 PPR repeat family
PPR PF01535 389 - 419 2.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1172
AccII CGCG 2 cut(s) 782, 998
AccIII TCCGGA 2 cut(s) 443, 522
AciI CCGC 2 cut(s) 807, 1546
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 2 cut(s) 871, 988
AcvI CACGTG 1 cut(s) 827
AfaI GTAC 6 cut(s) 467, 737, 797, 1032, 1358, 1481
AfiI CCNNNNNNNGG 1 cut(s) 1250
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 5 cut(s) 305, 314, 988, 1142, 1259
AhlI ACTAGT 1 cut(s) 1312
AjnI CCWGG 2 cut(s) 605, 930
AluBI AGCT 4 cut(s) 714, 820, 1196, 1295
AluI AGCT 4 cut(s) 714, 820, 1196, 1295
Alw21I GWGCWC 3 cut(s) 378, 391, 684
Alw26I GTCTC 1 cut(s) 699
Alw44I GTGCAC 1 cut(s) 387
Aor13HI TCCGGA 2 cut(s) 443, 522
AoxI GGCC 7 cut(s) 107, 262, 340, 412, 603, 621, 653
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 1292
ApoI RAATTY 2 cut(s) 871, 988
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
Asp700I GAANNNNTTC 3 cut(s) 318, 530, 1334
AspLEI GCGC 4 cut(s) 403, 895, 998, 1087
AsuC2I CCSGG 1 cut(s) 1124
AsuHPI GGTGA 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 605
BbrPI CACGTG 1 cut(s) 827
Bbv12I GWGCWC 3 cut(s) 378, 391, 684
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 1304
BccI CCATC 3 cut(s) 260, 833, 1061
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 2 cut(s) 607, 932
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 1 cut(s) 699
BcuI ACTAGT 1 cut(s) 1312
BfaI CTAG 3 cut(s) 1245, 1313, 1549
BisI GCNGC 2 cut(s) 808, 1293
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 2 cut(s) 809, 1294
Bme1390I CCNGG 3 cut(s) 607, 932, 1124
BmrFI CCNGG 3 cut(s) 607, 932, 1124
BmsI GCATC 8 cut(s) 631, 802, 834, 904, 927, 1230, 1379, 1459
BoxI GACNNNNGTC 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 3 cut(s) 730, 974, 1034
BpuMI CCSGG 1 cut(s) 1124
BsaAI YACGTR 1 cut(s) 827
BsaJI CCNNGG 2 cut(s) 259, 606
BsaWI WCCGGW 2 cut(s) 443, 522
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 1299, 1329
Bsc4I CCNNNNNNNGG 1 cut(s) 1250
BseAI TCCGGA 2 cut(s) 443, 522
BseBI CCWGG 2 cut(s) 607, 932
BseDI CCNNGG 2 cut(s) 259, 606
BseGI GGATG 6 cut(s) 255, 664, 849, 928, 967, 1394
BseLI CCNNNNNNNGG 1 cut(s) 1250
BseMII CTCAG 6 cut(s) 55, 250, 395, 807, 1227, 1385
BseRI GAGGAG 2 cut(s) 323, 1451
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 1304
BseYI CCCAGC 1 cut(s) 1415
Bsh1236I CGCG 2 cut(s) 782, 998
BshFI GGCC 7 cut(s) 109, 264, 342, 414, 605, 623, 655
BsiHKAI GWGCWC 3 cut(s) 378, 391, 684
BsiSI CCGG 5 cut(s) 444, 523, 656, 959, 1123
BslFI GGGAC 2 cut(s) 528, 566
BslI CCNNNNNNNGG 1 cut(s) 1250
BsmAI GTCTC 1 cut(s) 699
BsmFI GGGAC 2 cut(s) 528, 566
BsmI GAATGC 3 cut(s) 1087, 1127, 1254
BsnI GGCC 7 cut(s) 109, 264, 342, 414, 605, 623, 655
Bsp1286I GDGCHC 3 cut(s) 378, 391, 684
Bsp13I TCCGGA 2 cut(s) 443, 522
Bsp1407I TGTACA 1 cut(s) 1356
Bsp143I GATC 2 cut(s) 44, 1045
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 2 cut(s) 807, 1546
BspANI GGCC 7 cut(s) 109, 264, 342, 414, 605, 623, 655
BspCNI CTCAG 6 cut(s) 54, 249, 396, 808, 1228, 1384
BspEI TCCGGA 2 cut(s) 443, 522
BspFNI CGCG 2 cut(s) 782, 998
BspHI TCATGA 1 cut(s) 483
BsrGI TGTACA 1 cut(s) 1356
BssECI CCNNGG 2 cut(s) 259, 606
BssMI GATC 2 cut(s) 44, 1045
BssNAI GTATAC 1 cut(s) 1173
BssT1I CCWWGG 1 cut(s) 259
Bst1107I GTATAC 1 cut(s) 1173
Bst2UI CCWGG 2 cut(s) 607, 932
Bst4CI ACNGT 3 cut(s) 364, 393, 1354
Bst6I CTCTTC 2 cut(s) 117, 123
BstAUI TGTACA 1 cut(s) 1356
BstBAI YACGTR 1 cut(s) 827
BstC8I GCNNGC 4 cut(s) 27, 416, 691, 822
BstDEI CTNAG 8 cut(s) 41, 236, 404, 816, 1104, 1236, 1364, 1371
BstF5I GGATG 6 cut(s) 255, 664, 849, 928, 967, 1394
BstFNI CGCG 2 cut(s) 782, 998
BstHHI GCGC 4 cut(s) 403, 895, 998, 1087
BstKTI GATC 2 cut(s) 47, 1048
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 2 cut(s) 44, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 821, 1462
BstNI CCWGG 2 cut(s) 607, 932
BstNSI RCATGY 3 cut(s) 29, 1037, 1456
BstPAI GACNNNNGTC 1 cut(s) 540
BstSCI CCNGG 3 cut(s) 605, 930, 1122
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 2 cut(s) 782, 998
BstV1I GCAGC 1 cut(s) 1304
BstZ17I GTATAC 1 cut(s) 1173
BsuRI GGCC 7 cut(s) 109, 264, 342, 414, 605, 623, 655
BtgZI GCGATG 2 cut(s) 825, 1193
BtsCI GGATG 6 cut(s) 255, 664, 849, 928, 967, 1394
BtsIMutI CAGTG 2 cut(s) 360, 398
Cac8I GCNNGC 4 cut(s) 27, 416, 691, 822
CciI TCATGA 1 cut(s) 483
CfoI GCGC 4 cut(s) 403, 895, 998, 1087
Csp6I GTAC 6 cut(s) 466, 736, 796, 1031, 1357, 1480
CviQI GTAC 6 cut(s) 466, 736, 796, 1031, 1357, 1480
DdeI CTNAG 8 cut(s) 41, 236, 404, 816, 1104, 1236, 1364, 1371
DpnI GATC 2 cut(s) 46, 1047
DpnII GATC 2 cut(s) 44, 1045
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 117, 123
EarI CTCTTC 2 cut(s) 117, 123
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 3 cut(s) 109, 264, 623
Eco32I GATATC 1 cut(s) 882
Eco72I CACGTG 1 cut(s) 827
EcoRI GAATTC 2 cut(s) 871, 988
EcoRII CCWGG 2 cut(s) 605, 930
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 2 cut(s) 1203, 1394
ErhI CCWWGG 1 cut(s) 259
FaqI GGGAC 2 cut(s) 528, 566
FauNDI CATATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 1172
Fnu4HI GCNGC 2 cut(s) 808, 1293
FokI GGATG 6 cut(s) 242, 671, 856, 935, 974, 1401
Fsp4HI GCNGC 2 cut(s) 808, 1293
FspBI CTAG 3 cut(s) 1245, 1313, 1549
GlaI GCGC 4 cut(s) 402, 894, 997, 1086
GluI GCNGC 2 cut(s) 808, 1293
GsaI CCCAGC 1 cut(s) 1419
HaeIII GGCC 7 cut(s) 109, 264, 342, 414, 605, 623, 655
HapII CCGG 5 cut(s) 444, 523, 656, 959, 1123
HhaI GCGC 4 cut(s) 403, 895, 998, 1087
Hin6I GCGC 4 cut(s) 401, 893, 996, 1085
HinP1I GCGC 4 cut(s) 401, 893, 996, 1085
HincII GTYRAC 3 cut(s) 472, 1350, 1399
HindII GTYRAC 3 cut(s) 472, 1350, 1399
HinfI GANTC 4 cut(s) 39, 447, 945, 1000
HpaII CCGG 5 cut(s) 444, 523, 656, 959, 1123
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 8 cut(s) 389, 466, 472, 757, 1173, 1350, 1357, 1399
Hpy188I TCNGA 5 cut(s) 44, 1050, 1237, 1329, 1374
Hpy188III TCNNGA 5 cut(s) 350, 444, 484, 523, 953
Hpy8I GTNNAC 8 cut(s) 389, 466, 472, 757, 1173, 1350, 1357, 1399
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 7 cut(s) 211, 279, 356, 404, 520, 605, 634
HpyCH4III ACNGT 3 cut(s) 364, 393, 1354
HpyCH4IV ACGT 3 cut(s) 468, 519, 826
HpyCH4V TGCA 9 cut(s) 25, 51, 389, 434, 824, 940, 1201, 1292, 1392
HpyF10VI GCNNNNNNNGC 2 cut(s) 821, 1462
HpyF3I CTNAG 8 cut(s) 41, 236, 404, 816, 1104, 1236, 1364, 1371
HpySE526I ACGT 3 cut(s) 468, 519, 826
HspAI GCGC 4 cut(s) 401, 893, 996, 1085
Kpn2I TCCGGA 2 cut(s) 443, 522
Kzo9I GATC 2 cut(s) 44, 1045
LmnI GCTCC 1 cut(s) 336
Lsp1109I GCAGC 1 cut(s) 1304
LweI GCATC 8 cut(s) 631, 802, 834, 904, 927, 1230, 1379, 1459
MaeI CTAG 3 cut(s) 1245, 1313, 1549
MaeII ACGT 3 cut(s) 468, 519, 826
MaeIII GTNAC 2 cut(s) 967, 1270
MalI GATC 2 cut(s) 46, 1047
MboI GATC 2 cut(s) 44, 1045
MboII GAAGA 5 cut(s) 104, 110, 153, 293, 736
MfeI CAATTG 2 cut(s) 1458, 1538
MhlI GDGCHC 3 cut(s) 378, 391, 684
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 7 cut(s) 514, 675, 698, 871, 988, 1458, 1538
MluI ACGCGT 1 cut(s) 780
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 2 cut(s) 33, 441
MmeI TCCRAC 4 cut(s) 900, 1168, 1477, 1499
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 2 cut(s) 1203, 1394
MroI TCCGGA 2 cut(s) 443, 522
MroXI GAANNNNTTC 3 cut(s) 318, 530, 1334
MscI TGGCCA 1 cut(s) 605
MseI TTAA 5 cut(s) 206, 789, 1421, 1446, 1476
MslI CAYNNNNRTG 3 cut(s) 429, 482, 1038
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 5 cut(s) 444, 523, 656, 959, 1123
MspR9I CCNGG 3 cut(s) 607, 932, 1124
MunI CAATTG 2 cut(s) 1458, 1538
Mva1269I GAATGC 3 cut(s) 1087, 1127, 1254
MvaI CCWGG 2 cut(s) 607, 932
MvnI CGCG 2 cut(s) 782, 998
MwoI GCNNNNNNNGC 2 cut(s) 821, 1462
NciI CCSGG 1 cut(s) 1124
NdeI CATATG 1 cut(s) 327
NdeII GATC 2 cut(s) 44, 1045
NsiI ATGCAT 2 cut(s) 1203, 1394
NspI RCATGY 3 cut(s) 29, 1037, 1456
PaeI GCATGC 1 cut(s) 29
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 3 cut(s) 109, 264, 623
PcsI WCGNNNNNNNCGW 1 cut(s) 1175
PctI GAATGC 3 cut(s) 1087, 1127, 1254
PdmI GAANNNNTTC 3 cut(s) 318, 530, 1334
PfeI GAWTC 2 cut(s) 945, 1000
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 2 cut(s) 809, 1294
PleI GAGTC 2 cut(s) 33, 441
PmaCI CACGTG 1 cut(s) 827
PmlI CACGTG 1 cut(s) 827
PpsI GAGTC 2 cut(s) 33, 441
Ppu21I YACGTR 1 cut(s) 827
PshAI GACNNNNGTC 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 605, 930
PspCI CACGTG 1 cut(s) 827
PspFI CCCAGC 1 cut(s) 1415
PspGI CCWGG 2 cut(s) 605, 930
RsaI GTAC 6 cut(s) 467, 737, 797, 1032, 1358, 1481
RsaNI GTAC 6 cut(s) 466, 736, 796, 1031, 1357, 1480
RseI CAYNNNNRTG 3 cut(s) 429, 482, 1038
SaqAI TTAA 5 cut(s) 206, 789, 1421, 1446, 1476
SatI GCNGC 2 cut(s) 808, 1293
Sau3AI GATC 2 cut(s) 44, 1045
SchI GAGTC 2 cut(s) 33, 441
ScrFI CCNGG 3 cut(s) 607, 932, 1124
SduI GDGCHC 3 cut(s) 378, 391, 684
SfaNI GCATC 8 cut(s) 631, 802, 834, 904, 927, 1230, 1379, 1459
SmiMI CAYNNNNRTG 3 cut(s) 429, 482, 1038
SmlI CTYRAG 3 cut(s) 709, 953, 1013
SmoI CTYRAG 3 cut(s) 709, 953, 1013
SpeI ACTAGT 1 cut(s) 1312
SphI GCATGC 1 cut(s) 29
Sse9I AATT 7 cut(s) 514, 675, 698, 871, 988, 1458, 1538
SseBI AGGCCT 3 cut(s) 109, 264, 623
SsiI CCGC 2 cut(s) 807, 1546
SspMI CTAG 3 cut(s) 1245, 1313, 1549
StuI AGGCCT 3 cut(s) 109, 264, 623
StyD4I CCNGG 3 cut(s) 605, 930, 1122
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 364, 393, 1354
TaiI ACGT 3 cut(s) 471, 522, 829
TaqI TCGA 1 cut(s) 534
TaqII GACCGA 1 cut(s) 938
TasI AATT 7 cut(s) 514, 675, 698, 871, 988, 1458, 1538
TatI WGTACW 3 cut(s) 795, 1356, 1479
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 2 cut(s) 945, 1000
Tru1I TTAA 5 cut(s) 206, 789, 1421, 1446, 1476
Tru9I TTAA 5 cut(s) 206, 789, 1421, 1446, 1476
TscAI CASTG 2 cut(s) 367, 398
TseI GCWGC 1 cut(s) 1292
TspDTI ATGAA 2 cut(s) 17, 1163
TspGWI ACGGA 2 cut(s) 1168, 1401
TspRI CASTG 2 cut(s) 367, 398
VneI GTGCAC 1 cut(s) 387
XapI RAATTY 2 cut(s) 871, 988
XceI RCATGY 3 cut(s) 29, 1037, 1456
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XmiI GTMKAC 1 cut(s) 1172
XmnI GAANNNNTTC 3 cut(s) 318, 530, 1334
XspI CTAG 3 cut(s) 1245, 1313, 1549
Zsp2I ATGCAT 2 cut(s) 1203, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.