MD07G1076300.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014793
Physical Location & Seq
Forward (+)
7283115 .. 7284938
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1076300.v1.1.491

Sequence Viewer

Length: 1824 bp
ATGAACTCCCAAGAATTATGGGTCCATGTTTATGGGAGACTCAAATCATGCAAATCAATAAGCACAACACAACTCAAACAGTTGCATTCATTTCTCATCAAAACAAGGCCTCTCCCTCTCAAATACCCGAACCTCATTTCTTCTCCTCCATCTCCTCCTCACAAAAACAAACACAAATACTCACATTCCACTCACATCCTCTCTTTCTTAAACCACCTGGAAAAGCCAGACCTCTGCCTCTCCCTCTACAATGCCATCATCCAAGGCCTCCCTTCAAATCCCACCACCAAAACAGCCTCCCTTTTCCAACTGTTTGAATTGCTTGGACACATGCTTGCCAATGGCATCCTTCCTGACCACTACACCGTCCCCTCTGTTCTCAAAGCGTGCGCGCAGTCGCGTGCGCTGAGAGAGGGGCAGCAGATTCACGCCTACGCTATCAAAACCGGGCTTGTTTTGTCCAATGTGTACGTCAATAACACTCTTATGAGGGTTTATGCTGTTTGTGGGGTTATGAAATGGGTCCGGTTGGTGTTTGATGAAAGTCCTCAGAGGGACTTGGTTTCGTGGACTACGCTTATTCAGGGTTATGTTAAAATGGGGTTTCCGAGAGAAGGCGTTGAAGTGTTTTTTAGGATGTGTGATGCTGAGATGAGGGCGGATGAGATGACGTTGGTCATTGTTCTCTCTGCTTGCTCGAAGTTGGGAGACTTGAGCTTGGGTAGGAAGATCAGTGGATACATTTACGATAATGGGGTATGCCGAGATGTTTTTATAGGCAATGCGTTGGTCGATATGTACTTGAAGTGTGGGGATGCCGACTTTGCACGTAAAGTCTTTAATGAGATGCCTGTGAGAAATGTGGTTTCCTGGAATTCGATGATATCGGGTTTAGCACACCAAGGGAAATTTAAGGAGGCGTTGGACGTGTTCCAGGAGATGCAAAGAATGGGTCTTGAGCCAGATGATGTTACTTTAGTTGGCGTATTGAATTCGTGCGCGAATCTTGGAGTGCTCGAGATGGGGGAGTGGGTACATGCTTATGTTGATAGAAATCATATCGATGCAGATGGGTTTATAGGAAATGCGCTTGTGGATATGTATGCTAAGTGTGGAAGTATAGACCGAGCCTTTAGAGTTTTTCAACGCATGAATCGCAGAGACGTATATTCATATACTGCCATGATTGTTGGGTTAGCTATGCATGGGGAGGTAGAGATGGCATTGGATGTATTTGCTGAAATGCCTAGAGTGGGCATTGAACCGGATGAGGTAACATTTATCGGAGTCCTTGCAGCTTGTAGTCATGGAGGACTTGTGGCAGAGGGTCAGAAGTATTTTAGGGAGATGTCAAGTGTGCACAAGCTCAGACCTCAGACAGAGCATTATGGCTGCATGGTTGACCTGTTAGGCCGTGCCGGGTTTATAAACGAGGCAGAGGAGTTTGTTGAAAACATGCCAATTGAGCCTGATGCCTTTGTTTGGGGAGCCCTATTGGGAGCCTGCAGGATCCATGGGAAAGTAGAGCTTGCTGAAAGTGTGATGAAGAAACTACTGAAGGTAGAGCCCGAGAGAGATGGTGCATATGTGCTCATGTCTAACATATATTCCTCTGCAAATAGATGGAGGGATGCAGTGAAGTTGAGACGGGCGATGAAGGGAAAGAACGTGAAGAAAACTCCCGGGTGTAGTTCAATCGAACTTGATGGTATTGTTCATGAATTCAGAAAGGGTGACAAATCACATAAAAGAAGCAAAGAAATATACAAATTGCTAGAAGAGATTATGAACCACATAAAGAACCATGAGCTTTTGGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

608

Amino Acids

68.35

Weight (kDa)

8.25

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 188 - 215 2.5e-06 PPR repeat
PPR_2 PF13041 286 - 335 1e-14 PPR repeat family
PPR_1 PF12854 286 - 315 5.5e-06 PPR repeat
PPR PF01535 289 - 319 3e-10 PPR repeat
PPR_2 PF13041 387 - 435 5.9e-11 PPR repeat family
PPR PF01535 390 - 420 4.6e-06 PPR repeat
E_motif PF20431 505 - 567 4e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014793)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g07400
malus_domestica MD02G1240700.v1.1 MD07G1076300.v1.1
prunus_persica Prupe.2G097100_v2.0.a1
pyrus_communis pycom02g20580 pycom07g06010
rosa_chinensis RchiOBHm_Chr1g0337001
rosa_laevigata RLG00000029313
rosa_multiflora Rmu_sc0009742.1_g000003
rosa_roxburghii Rroxscaffold_4G00315060
rosa_rugosa Rorug01G0129900 Rorug01G0130000 Rorug01G0130200
rosa_samantha Rh1AG150700 Rh1BG119100 Rh1CG141900
rosa_wichuraiana Rw1G012320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1427
AccII CGCG 3 cut(s) 392, 400, 1001
AciI CCGC 1 cut(s) 659
AclWI GGATC 2 cut(s) 1504, 1517
AcsI RAATTY 4 cut(s) 874, 908, 991, 1721
AcuI CTGAAG 1 cut(s) 1577
AfaI GTAC 3 cut(s) 470, 800, 1035
AfiI CCNNNNNNNGG 3 cut(s) 614, 1253, 1482
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 9 cut(s) 276, 317, 623, 805, 991, 1145, 1262, 1451, 1695
AjiI CACGTC 1 cut(s) 928
AjnI CCWGG 3 cut(s) 216, 869, 933
AluBI AGCT 6 cut(s) 717, 1199, 1298, 1366, 1528, 1810
AluI AGCT 6 cut(s) 717, 1199, 1298, 1366, 1528, 1810
Alw21I GWGCWC 3 cut(s) 1017, 1362, 1593
Alw26I GTCTC 4 cut(s) 31, 702, 1155, 1639
Alw44I GTGCAC 1 cut(s) 1358
AlwI GGATC 2 cut(s) 1504, 1517
Ama87I CYCGRG 3 cut(s) 1016, 1568, 1682
AoxI GGCC 3 cut(s) 107, 265, 1411
ApaLI GTGCAC 1 cut(s) 1358
ApeKI GCWGC 3 cut(s) 418, 1295, 1392
ApoI RAATTY 4 cut(s) 874, 908, 991, 1721
ArsI GACNNNNNNTTYG 2 cut(s) 937, 969
AspLEI GCGC 5 cut(s) 392, 394, 406, 1001, 1090
AspS9I GGNCC 2 cut(s) 22, 523
AsuC2I CCSGG 4 cut(s) 448, 1420, 1683, 1684
AsuHPI GGTGA 1 cut(s) 1745
AvaI CYCGRG 3 cut(s) 1016, 1568, 1682
AvaII GGWCC 2 cut(s) 22, 523
BaeGI GKGCMC 1 cut(s) 1362
BamHI GGATCC 1 cut(s) 1509
BanII GRGCYC 2 cut(s) 1492, 1569
Bbv12I GWGCWC 3 cut(s) 1017, 1362, 1593
BbvI GCAGC 3 cut(s) 430, 1307, 1379
BccI CCATC 8 cut(s) 157, 263, 1015, 1064, 1213, 1571, 1617, 1700
BceAI ACGGC 1 cut(s) 1398
BciT130I CCWGG 3 cut(s) 218, 871, 935
BciVI GTATCC 1 cut(s) 731
BcnI CCSGG 4 cut(s) 448, 1420, 1683, 1684
BcoDI GTCTC 4 cut(s) 31, 702, 1155, 1639
BfaI CTAG 2 cut(s) 1248, 1775
BfmI CTRYAG 1 cut(s) 1504
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 3 cut(s) 419, 1296, 1393
BlsI GCNGC 3 cut(s) 420, 1297, 1394
Bme1390I CCNGG 7 cut(s) 218, 448, 871, 935, 1420, 1683, 1684
Bme18I GGWCC 2 cut(s) 22, 523
BmeT110I CYCGRG 3 cut(s) 1016, 1568, 1682
BmgBI CACGTC 1 cut(s) 928
BmgT120I GGNCC 2 cut(s) 22, 523
BmiI GGNNCC 5 cut(s) 23, 524, 1489, 1501, 1511
BmrFI CCNGG 7 cut(s) 218, 448, 871, 935, 1420, 1683, 1684
BmsI GCATC 8 cut(s) 354, 634, 805, 837, 930, 1054, 1462, 1621
BoxI GACNNNNGTC 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 733, 977
BpuMI CCSGG 4 cut(s) 448, 1420, 1683, 1684
Bsa29I ATCGAT 1 cut(s) 1062
BsaAI YACGTR 1 cut(s) 830
BsaBI GATNNNNATC 1 cut(s) 1053
BsaJI CCNNGG 4 cut(s) 262, 901, 1513, 1682
BsaWI WCCGGW 2 cut(s) 525, 1264
BsaXI ACNNNNNCTCC 2 cut(s) 1302, 1332
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 1253, 1482
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 3 cut(s) 218, 871, 935
BseCI ATCGAT 1 cut(s) 1062
BseDI CCNNGG 4 cut(s) 262, 901, 1513, 1682
BseGI GGATG 9 cut(s) 195, 258, 345, 642, 667, 820, 1234, 1273, 1636
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 3 cut(s) 614, 1253, 1482
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 5 cut(s) 398, 563, 639, 1381, 1388
BsePI GCGCGC 1 cut(s) 390
BseRI GAGGAG 4 cut(s) 135, 144, 147, 1454
BseSI GKGCMC 1 cut(s) 1362
BseXI GCAGC 3 cut(s) 430, 1307, 1379
Bsh1236I CGCG 3 cut(s) 392, 400, 1001
BshFI GGCC 3 cut(s) 109, 267, 1413
BshVI ATCGAT 1 cut(s) 1062
BsiHKAI GWGCWC 3 cut(s) 1017, 1362, 1593
BsiHKCI CYCGRG 3 cut(s) 1016, 1568, 1682
BsiSI CCGG 5 cut(s) 447, 526, 1265, 1419, 1683
BslFI GGGAC 2 cut(s) 353, 569
BslI CCNNNNNNNGG 3 cut(s) 614, 1253, 1482
BsmAI GTCTC 4 cut(s) 31, 702, 1155, 1639
BsmBI CGTCTC 2 cut(s) 1155, 1639
BsmFI GGGAC 2 cut(s) 353, 569
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 3 cut(s) 109, 267, 1413
BsoBI CYCGRG 3 cut(s) 1016, 1568, 1682
Bsp1286I GDGCHC 5 cut(s) 1017, 1362, 1492, 1569, 1593
Bsp143I GATC 2 cut(s) 729, 1509
Bsp19I CCATGG 1 cut(s) 1513
BspACI CCGC 1 cut(s) 659
BspANI GGCC 3 cut(s) 109, 267, 1413
BspCNI CTCAG 5 cut(s) 399, 562, 640, 1380, 1387
BspDI ATCGAT 1 cut(s) 1062
BspFNI CGCG 3 cut(s) 392, 400, 1001
BspHI TCATGA 1 cut(s) 1717
BspLI GGNNCC 5 cut(s) 23, 524, 1489, 1501, 1511
BspMAI CTGCAG 1 cut(s) 1508
BspPI GGATC 2 cut(s) 1504, 1517
BsrDI GCAATG 1 cut(s) 787
BssECI CCNNGG 4 cut(s) 262, 901, 1513, 1682
BssHII GCGCGC 1 cut(s) 390
BssMI GATC 2 cut(s) 729, 1509
BssT1I CCWWGG 3 cut(s) 262, 901, 1513
Bst2UI CCWGG 3 cut(s) 218, 871, 935
Bst4CI ACNGT 3 cut(s) 81, 312, 367
Bst6I CTCTTC 1 cut(s) 1773
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 7 cut(s) 336, 388, 392, 402, 694, 1504, 1530
BstDEI CTNAG 6 cut(s) 407, 549, 648, 1107, 1367, 1374
BstDSI CCRYGG 1 cut(s) 1513
BstF5I GGATG 9 cut(s) 195, 258, 345, 642, 667, 820, 1234, 1273, 1636
BstFNI CGCG 3 cut(s) 392, 400, 1001
BstHHI GCGC 5 cut(s) 392, 394, 406, 1001, 1090
BstKTI GATC 2 cut(s) 732, 1512
BstMAI GTCTC 4 cut(s) 31, 702, 1155, 1639
BstMBI GATC 2 cut(s) 729, 1509
BstMWI GCNNNNNNNGC 3 cut(s) 824, 1155, 1465
BstNI CCWGG 3 cut(s) 218, 871, 935
BstNSI RCATGY 3 cut(s) 334, 1040, 1459
BstPAI GACNNNNGTC 1 cut(s) 674
BstSCI CCNGG 7 cut(s) 216, 446, 869, 933, 1418, 1681, 1682
BstSFI CTRYAG 1 cut(s) 1504
BstSLI GKGCMC 1 cut(s) 1362
BstUI CGCG 3 cut(s) 392, 400, 1001
BstV1I GCAGC 3 cut(s) 430, 1307, 1379
BstX2I RGATCY 1 cut(s) 1509
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 1509
Bsu15I ATCGAT 1 cut(s) 1062
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 3 cut(s) 109, 267, 1413
BsuTUI ATCGAT 1 cut(s) 1062
BtgI CCRYGG 1 cut(s) 1513
BtgZI GCGATG 1 cut(s) 1667
BtrI CACGTC 1 cut(s) 928
BtsCI GGATG 9 cut(s) 195, 258, 345, 642, 667, 820, 1234, 1273, 1636
BtsI GCAGTG 1 cut(s) 1641
BtsIMutI CAGTG 3 cut(s) 739, 1641, 1819
Cac8I GCNNGC 7 cut(s) 336, 388, 392, 402, 694, 1504, 1530
CciI TCATGA 1 cut(s) 1717
CfoI GCGC 5 cut(s) 392, 394, 406, 1001, 1090
Cfr13I GGNCC 2 cut(s) 22, 523
Cfr9I CCCGGG 1 cut(s) 1682
ClaI ATCGAT 1 cut(s) 1062
Csp6I GTAC 3 cut(s) 469, 799, 1034
CviQI GTAC 3 cut(s) 469, 799, 1034
DdeI CTNAG 6 cut(s) 407, 549, 648, 1107, 1367, 1374
DpnI GATC 2 cut(s) 731, 1511
DpnII GATC 2 cut(s) 729, 1509
Eam1104I CTCTTC 1 cut(s) 1773
EarI CTCTTC 1 cut(s) 1773
EciI GGCGGA 1 cut(s) 674
Eco130I CCWWGG 3 cut(s) 262, 901, 1513
Eco147I AGGCCT 2 cut(s) 109, 267
Eco24I GRGCYC 2 cut(s) 1492, 1569
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 2 cut(s) 22, 523
Eco57I CTGAAG 1 cut(s) 1577
Eco88I CYCGRG 3 cut(s) 1016, 1568, 1682
EcoRI GAATTC 3 cut(s) 874, 991, 1721
EcoRII CCWGG 3 cut(s) 216, 869, 933
EcoRV GATATC 1 cut(s) 885
EcoT14I CCWWGG 3 cut(s) 262, 901, 1513
EcoT22I ATGCAT 1 cut(s) 1206
EcoT38I GRGCYC 2 cut(s) 1492, 1569
ErhI CCWWGG 3 cut(s) 262, 901, 1513
Esp3I CGTCTC 2 cut(s) 1155, 1639
FalI AAGNNNNNCTT 2 cut(s) 1512, 1544
FaqI GGGAC 2 cut(s) 353, 569
FauNDI CATATG 1 cut(s) 1585
Fnu4HI GCNGC 3 cut(s) 419, 1296, 1393
FokI GGATG 9 cut(s) 182, 245, 332, 649, 674, 827, 1241, 1280, 1643
FriOI GRGCYC 2 cut(s) 1492, 1569
Fsp4HI GCNGC 3 cut(s) 419, 1296, 1393
FspBI CTAG 2 cut(s) 1248, 1775
GlaI GCGC 5 cut(s) 391, 393, 405, 1000, 1089
GluI GCNGC 3 cut(s) 419, 1296, 1393
HaeIII GGCC 3 cut(s) 109, 267, 1413
HapII CCGG 5 cut(s) 447, 526, 1265, 1419, 1683
HhaI GCGC 5 cut(s) 392, 394, 406, 1001, 1090
Hin6I GCGC 5 cut(s) 390, 392, 404, 999, 1088
HinP1I GCGC 5 cut(s) 390, 392, 404, 999, 1088
HincII GTYRAC 1 cut(s) 1402
HindII GTYRAC 1 cut(s) 1402
HinfI GANTC 5 cut(s) 39, 424, 1003, 1153, 1287
HpaII CCGG 5 cut(s) 447, 526, 1265, 1419, 1683
HphI GGTGA 1 cut(s) 1745
Hpy166II GTNNAC 4 cut(s) 469, 570, 1360, 1402
Hpy188I TCNGA 7 cut(s) 552, 609, 1286, 1332, 1370, 1377, 1727
Hpy188III TCNNGA 4 cut(s) 353, 956, 1018, 1718
Hpy8I GTNNAC 4 cut(s) 469, 570, 1360, 1402
HpyAV CCTTC 5 cut(s) 282, 359, 608, 1552, 1651
HpyCH4III ACNGT 3 cut(s) 81, 312, 367
HpyCH4IV ACGT 6 cut(s) 471, 671, 829, 927, 1164, 1668
HpyF10VI GCNNNNNNNGC 3 cut(s) 824, 1155, 1465
HpyF3I CTNAG 6 cut(s) 407, 549, 648, 1107, 1367, 1374
HpySE526I ACGT 6 cut(s) 471, 671, 829, 927, 1164, 1668
HspAI GCGC 5 cut(s) 390, 392, 404, 999, 1088
Kzo9I GATC 2 cut(s) 729, 1509
LmnI GCTCC 2 cut(s) 1487, 1499
Lsp1109I GCAGC 3 cut(s) 430, 1307, 1379
LweI GCATC 8 cut(s) 354, 634, 805, 837, 930, 1054, 1462, 1621
MaeI CTAG 2 cut(s) 1248, 1775
MaeII ACGT 6 cut(s) 471, 671, 829, 927, 1164, 1668
MaeIII GTNAC 3 cut(s) 970, 1273, 1733
MalI GATC 2 cut(s) 731, 1511
MboI GATC 2 cut(s) 729, 1509
MboII GAAGA 5 cut(s) 132, 739, 1558, 1684, 1790
MfeI CAATTG 1 cut(s) 1461
MflI RGATCY 1 cut(s) 1509
MhlI GDGCHC 5 cut(s) 1017, 1362, 1492, 1569, 1593
MluCI AATT 8 cut(s) 14, 317, 874, 908, 991, 1461, 1721, 1769
MlyI GAGTC 2 cut(s) 33, 1296
MmeI TCCRAC 2 cut(s) 331, 903
Mph1103I ATGCAT 1 cut(s) 1206
MseI TTAA 4 cut(s) 209, 594, 840, 912
MslI CAYNNNNRTG 4 cut(s) 30, 485, 1041, 1062
MspI CCGG 5 cut(s) 447, 526, 1265, 1419, 1683
MspR9I CCNGG 7 cut(s) 218, 448, 871, 935, 1420, 1683, 1684
MunI CAATTG 1 cut(s) 1461
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 3 cut(s) 218, 871, 935
MvnI CGCG 3 cut(s) 392, 400, 1001
MwoI GCNNNNNNNGC 3 cut(s) 824, 1155, 1465
NciI CCSGG 4 cut(s) 448, 1420, 1683, 1684
NcoI CCATGG 1 cut(s) 1513
NdeI CATATG 1 cut(s) 1585
NdeII GATC 2 cut(s) 729, 1509
NlaIV GGNNCC 5 cut(s) 23, 524, 1489, 1501, 1511
NmeAIII GCCGAG 1 cut(s) 788
NmuCI GTSAC 1 cut(s) 1733
NsiI ATGCAT 1 cut(s) 1206
NspI RCATGY 3 cut(s) 334, 1040, 1459
PaeR7I CTCGAG 1 cut(s) 1016
PagI TCATGA 1 cut(s) 1717
PauI GCGCGC 1 cut(s) 390
PceI AGGCCT 2 cut(s) 109, 267
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 424, 1003, 1153
PfoI TCCNGGA 2 cut(s) 869, 933
PkrI GCNGC 3 cut(s) 420, 1297, 1394
PleI GAGTC 2 cut(s) 33, 1295
PpsI GAGTC 2 cut(s) 33, 1295
Ppu21I YACGTR 1 cut(s) 830
PshAI GACNNNNGTC 1 cut(s) 674
PsiI TTATAA 1 cut(s) 1427
Psp6I CCWGG 3 cut(s) 216, 869, 933
PspGI CCWGG 3 cut(s) 216, 869, 933
PspN4I GGNNCC 5 cut(s) 23, 524, 1489, 1501, 1511
PspPI GGNCC 2 cut(s) 22, 523
PstI CTGCAG 1 cut(s) 1508
PsuI RGATCY 1 cut(s) 1509
PteI GCGCGC 1 cut(s) 390
RsaI GTAC 3 cut(s) 470, 800, 1035
RsaNI GTAC 3 cut(s) 469, 799, 1034
RseI CAYNNNNRTG 4 cut(s) 30, 485, 1041, 1062
SaqAI TTAA 4 cut(s) 209, 594, 840, 912
SatI GCNGC 3 cut(s) 419, 1296, 1393
Sau3AI GATC 2 cut(s) 729, 1509
Sau96I GGNCC 2 cut(s) 22, 523
SbfI CCTGCAGG 1 cut(s) 1508
SchI GAGTC 2 cut(s) 33, 1296
ScrFI CCNGG 7 cut(s) 218, 448, 871, 935, 1420, 1683, 1684
SdaI CCTGCAGG 1 cut(s) 1508
SduI GDGCHC 5 cut(s) 1017, 1362, 1492, 1569, 1593
SfaNI GCATC 8 cut(s) 354, 634, 805, 837, 930, 1054, 1462, 1621
SfcI CTRYAG 1 cut(s) 1504
Sfr274I CTCGAG 1 cut(s) 1016
SinI GGWCC 2 cut(s) 22, 523
SlaI CTCGAG 1 cut(s) 1016
SmaI CCCGGG 1 cut(s) 1684
SmiMI CAYNNNNRTG 4 cut(s) 30, 485, 1041, 1062
SmlI CTYRAG 3 cut(s) 712, 956, 1016
SmoI CTYRAG 3 cut(s) 712, 956, 1016
Sse8387I CCTGCAGG 1 cut(s) 1508
Sse9I AATT 8 cut(s) 14, 317, 874, 908, 991, 1461, 1721, 1769
SseBI AGGCCT 2 cut(s) 109, 267
SsiI CCGC 1 cut(s) 659
SspMI CTAG 2 cut(s) 1248, 1775
StuI AGGCCT 2 cut(s) 109, 267
StyD4I CCNGG 7 cut(s) 216, 446, 869, 933, 1418, 1681, 1682
StyI CCWWGG 3 cut(s) 262, 901, 1513
TaaI ACNGT 3 cut(s) 81, 312, 367
TaiI ACGT 6 cut(s) 474, 674, 832, 930, 1167, 1671
TaqI TCGA 6 cut(s) 698, 792, 878, 1017, 1062, 1698
TaqII GACCGA 1 cut(s) 1140
TasI AATT 8 cut(s) 14, 317, 874, 908, 991, 1461, 1721, 1769
TatI WGTACW 1 cut(s) 798
TfiI GAWTC 3 cut(s) 424, 1003, 1153
Tru1I TTAA 4 cut(s) 209, 594, 840, 912
Tru9I TTAA 4 cut(s) 209, 594, 840, 912
TscAI CASTG 2 cut(s) 739, 1641
TseFI GTSAC 1 cut(s) 1733
TseI GCWGC 3 cut(s) 418, 1295, 1392
Tsp45I GTSAC 1 cut(s) 1733
TspMI CCCGGG 1 cut(s) 1682
TspRI CASTG 2 cut(s) 739, 1641
VneI GTGCAC 1 cut(s) 1358
VpaK11BI GGWCC 2 cut(s) 22, 523
XapI RAATTY 4 cut(s) 874, 908, 991, 1721
XceI RCATGY 3 cut(s) 334, 1040, 1459
XhoI CTCGAG 1 cut(s) 1016
XmaI CCCGGG 1 cut(s) 1682
XspI CTAG 2 cut(s) 1248, 1775
Zsp2I ATGCAT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.