Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Reverse (-)

34949488 .. 34950143

Gene Structure 656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1294800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATGACCAGAATACTGTTTCTTGGAACAATTTAATTACTTGTTATCAGCAAAATGGCCTAGCAAGTGAAGCCCTAGAAGTTTTTGTGCTGATGATGGAGTGTGGGTTCAAACCGGATAAACTAACTTTAGTCAGTGTGGTGAATGCATGCGCAAACTTGTCAGCAATAAAGGAAGGGCAGCAAATTCATGCTTGTGTTGTAAAATGTGCTAAATACAGGGATGATCTTGTTTTAGGCAATGCATTAGTTGATATTGGATATGCAAAATCAGCAAGGGTAAAAGCTGCAAGATTGATGTTTTCAAGGATAATGGAAAGAAATATAGTCTCCTGGAACACACTTATTACAGGTTACACACCGAATGGGGAATATGAAGAAGCCTTTGGACTTTTTCTCCTCATGAAAAATGAGTCTGTTTTGCCAACCCACTATATATTTGGGAATCTACTCAATGCTTGTGCATATCTTGTTGATATGCAGCTTGGCAGGCTGGTTCATGTACACGTATTGAAGCACGGATTTCATTCAAGGCCGGTGAAGAGCCTGATATTTTTGTCGAAAATTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

191

Amino Acids

21.28

Weight (kDa)

8.51

Isoelectric Point (pI)

24.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 53	1.3e-09	PPR repeat family
PPR	PF01535	7 - 37	4.1e-07	PPR repeat
PPR_2	PF13041	107 - 155	1.5e-10	PPR repeat family
PPR	PF01535	110 - 138	6.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	154
AcsI	RAATTY	2 cut(s)	186, 564
AfaI	GTAC	1 cut(s)	504
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	112, 306, 514, 531
AjnI	CCWGG	1 cut(s)	332
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	287, 484
AluI	AGCT	2 cut(s)	287, 484
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	2 cut(s)	58, 533
ApeKI	GCWGC	3 cut(s)	181, 287, 481
ApoI	RAATTY	2 cut(s)	186, 564
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	154, 550
BbvI	GCAGC	3 cut(s)	193, 274, 493
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	62, 77
BisI	GCNGC	3 cut(s)	182, 288, 482
BlsI	GCNGC	3 cut(s)	183, 289, 483
Bme1390I	CCNGG	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 381, 411
Bse118I	RCCGGY	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	193, 274, 493
BshFI	GGCC	2 cut(s)	60, 535
BsiSI	CCGG	2 cut(s)	116, 536
BsmAI	GTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	60, 535
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	60, 535
BspHI	TCATGA	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	535
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	502
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	2 cut(s)	151, 491
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 272, 490
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	193, 274, 493
BsuRI	GGCC	2 cut(s)	60, 535
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	151, 491
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	4 cut(s)	150, 191, 403, 500
CviJI	RGCY	8 cut(s)	60, 74, 287, 383, 484, 493, 535, 546
CviKI_1	RGCY	8 cut(s)	60, 74, 287, 383, 484, 493, 535, 546
CviQI	GTAC	1 cut(s)	503
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	332
EcoT22I	ATGCAT	2 cut(s)	151, 247
FaeI	CATG	4 cut(s)	153, 194, 406, 503
FatI	CATG	4 cut(s)	149, 190, 402, 499
Fnu4HI	GCNGC	3 cut(s)	182, 288, 482
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	182, 288, 482
FspBI	CTAG	2 cut(s)	62, 77
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	3 cut(s)	182, 288, 482
HaeIII	GGCC	2 cut(s)	60, 535
HapII	CCGG	2 cut(s)	116, 536
HhaI	GCGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	153, 194, 406, 503
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	413, 445
HpaII	CCGG	2 cut(s)	116, 536
HphI	GGTGA	2 cut(s)	154, 550
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	6 cut(s)	149, 245, 266, 290, 464, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 272, 490
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	4 cut(s)	153, 194, 406, 503
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	226
LguI	GCTCTTC	1 cut(s)	536
Lsp1109I	GCAGC	3 cut(s)	193, 274, 493
MaeI	CTAG	2 cut(s)	62, 77
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	389, 553
MluCI	AATT	4 cut(s)	31, 36, 186, 564
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	1 cut(s)	410
Mph1103I	ATGCAT	2 cut(s)	151, 247
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	116, 536
MspR9I	CCNGG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	71, 272, 490
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	153, 194, 406, 503
NsbI	TGCGCA	1 cut(s)	154
NsiI	ATGCAT	2 cut(s)	151, 247
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	536
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	445
PfoI	TCCNGGA	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	183, 289, 483
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	182, 288, 482
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	334
SetI	ASST	4 cut(s)	289, 355, 486, 510
SmiMI	CAYNNNNRTG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	4 cut(s)	31, 36, 186, 564
SspMI	CTAG	2 cut(s)	62, 77
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	560
TasI	AATT	4 cut(s)	31, 36, 186, 564
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	3 cut(s)	181, 287, 481
TspDTI	ATGAA	6 cut(s)	17, 179, 390, 419, 488, 515
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	186, 564
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	62, 77
Zsp2I	ATGCAT	2 cut(s)	151, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.