Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Reverse (-)

62075104 .. 62076680

Gene Structure 1577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGATTGTGGGTTCAAACCGGACGAGTTGACTTTAGCCAGTATGGAAAGTGCTTGTGCGAGCTTGTCCGCAGTGAAAGGAGGTCAGCAAATACATGCTTGTGTTATGAAATGTGATAAATACAGGAATGATGTTGTATTAGGAAATGCATTAGTTGATATGTATGCAAAATGCAACAGAATAAATGAGGCCAGAACGGTTTTCGATAGGATGCCTATCAGAAATGTGGTCTCGGAAACTTCCATGGTAAGTAGATATGCAAAGGCAACAAGTATAAAAGTTGCAAGATCAATGTCTACAAAGATGATGGCGAGGAATATAGTCTCTTGGAATGCACTTATTGTAGGGTACACACAGAATGGAGAGAATGAAGAGATCCTTGGACTTTTTCTCTTCCTAAAAGAGTCTGTTTGGCCCACCCACTACACATTTGCAAATCTACTCAATGCTTGTGCAAGTCTTGTTGATCTGCAGCTTAGCAGACAAGCTCATTCACACATATTGAAGCATGGTTTGCAATTGCAGGTTGGGGAAGAGCCTCATATATTTGTTGAAAATTCTCTAATAGATATGTACATGAAATATGGGTCTATTGAAGATGGCTGTCAGGTGTTTATGTTGGAAAGGGATCATGTCTCATGGAATGCTATTATTGTGGGACATGTGCAAAATGGTCATGGGACTGAAGCTCTTGAAATATTTAGGAAAATGCTGGTATCAGGGGAGCAACCAGACCATATTACTATGATTGGTGTTCTATGTGCTTATACCTATGCAGGATTGGTTGAAGAAGGGAGAAATTATTTTTACACAATGAATGAAGAGCATGGGGTGGTACCATTGAAGGACCATTATACATGTGTGGTTGATCTTCTTGGTCGAGCTGGTTGCCTAGACAAAGCTAAGAATTTAATAGAGCTTGGGAGATGGAGTGATGTTGTAATAGTAAGGAAGCTGATGAGGCAACGGGGTGTTGTCAAGCAGTCGGGTTGCGGTTGGATTGAAACACATGGTCATCTGAATGTTTTCCTAGTGAAAGATAAAAGGCATTCTCAAAAGAAGGAAATTTATTGTCTTTTGAAGTTGCTCACAGAACAAATGAAGCGACATGGATATGTACAAGATGCTTGTGGCTACGAGTCTTATGAAGAGCAAGCTGAATCTCAACCAACTTCATTTTTTGAAATGGATCTGTCAGAAGATGTAGCTGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

406

Amino Acids

45.78

Weight (kDa)

6.15

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 152	3.4e-06	PPR repeat family
PPR_2	PF13041	210 - 250	6.8e-08	PPR repeat family
PPR	PF01535	212 - 241	4.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
Acc65I	GGTACC	1 cut(s)	835
AccB1I	GGYRCC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	69, 993
AclWI	GGATC	3 cut(s)	370, 636, 1197
AcsI	RAATTY	3 cut(s)	556, 907, 1065
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	4 cut(s)	350, 575, 837, 1119
AflIII	ACRYGT	2 cut(s)	661, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	235, 328, 640
AlwI	GGATC	3 cut(s)	370, 636, 1197
AoxI	GGCC	2 cut(s)	189, 413
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	3 cut(s)	556, 907, 1065
Asp700I	GAANNNNTTC	1 cut(s)	1025
Asp718I	GGTACC	1 cut(s)	835
AspS9I	GGNCC	2 cut(s)	414, 847
AvaII	GGWCC	1 cut(s)	847
BanI	GGYRCC	1 cut(s)	835
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	3 cut(s)	301, 593, 921
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BcoDI	GTCTC	3 cut(s)	235, 328, 640
BfaI	CTAG	2 cut(s)	893, 1031
BfmI	CTRYAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	414, 847
BmiI	GGNNCC	1 cut(s)	837
BmsI	GCATC	2 cut(s)	201, 1114
Bpu1102I	GCTNAGC	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	243, 379
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	243, 379
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	2 cut(s)	191, 415
BshNI	GGYRCC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	672, 694
BsmAI	GTCTC	3 cut(s)	235, 328, 640
BsmFI	GGGAC	2 cut(s)	672, 694
BsmI	GAATGC	3 cut(s)	337, 649, 1048
BsnI	GGCC	2 cut(s)	191, 415
Bso31I	GGTCTC	1 cut(s)	235
Bsp1407I	TGTACA	2 cut(s)	573, 1117
Bsp143I	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
Bsp1720I	GCTNAGC	1 cut(s)	476
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	69, 993
BspANI	GGCC	2 cut(s)	191, 415
BspLI	GGNNCC	1 cut(s)	837
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	3 cut(s)	370, 636, 1197
BspQI	GCTCTTC	3 cut(s)	528, 816, 1143
BspT107I	GGYRCC	1 cut(s)	835
BspTNI	GGTCTC	1 cut(s)	235
BsrGI	TGTACA	2 cut(s)	573, 1117
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	243, 379
BssMI	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
BssT1I	CCWWGG	2 cut(s)	243, 379
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	5 cut(s)	366, 398, 528, 816, 1143
BstAPI	GCANNNNNTGC	1 cut(s)	514
BstAUI	TGTACA	2 cut(s)	573, 1117
BstC8I	GCNNGC	2 cut(s)	61, 1155
BstDEI	CTNAG	2 cut(s)	476, 903
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	6 cut(s)	290, 378, 469, 631, 871, 1192
BstMAI	GTCTC	3 cut(s)	235, 328, 640
BstMBI	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 961
BstNSI	RCATGY	3 cut(s)	98, 665, 861
BstSFI	CTRYAG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	2 cut(s)	375, 1189
BstYI	RGATCY	2 cut(s)	375, 1189
BsuRI	GGCC	2 cut(s)	191, 415
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	61, 1155
Cfr13I	GGNCC	2 cut(s)	414, 847
Csp6I	GTAC	4 cut(s)	349, 574, 836, 1118
CviQI	GTAC	4 cut(s)	349, 574, 836, 1118
DdeI	CTNAG	2 cut(s)	476, 903
DpnI	GATC	6 cut(s)	289, 377, 468, 630, 870, 1191
DpnII	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
Eam1104I	CTCTTC	5 cut(s)	366, 398, 528, 816, 1143
EarI	CTCTTC	5 cut(s)	366, 398, 528, 816, 1143
Eco130I	CCWWGG	2 cut(s)	243, 379
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	705
EcoT14I	CCWWGG	2 cut(s)	243, 379
EcoT22I	ATGCAT	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	243, 379
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	2 cut(s)	672, 694
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	2 cut(s)	893, 1031
GluI	GCNGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	191, 415
HapII	CCGG	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	404, 1139, 1160
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	30, 297, 351
Hpy188I	TCNGA	4 cut(s)	221, 235, 1020, 1198
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	3 cut(s)	30, 297, 351
HpyAV	CCTTC	3 cut(s)	785, 838, 1054
HpyCH4III	ACNGT	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 961
HpyF3I	CTNAG	2 cut(s)	476, 903
KpnI	GGTACC	1 cut(s)	839
Kzo9I	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
LguI	GCTCTTC	3 cut(s)	528, 816, 1143
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	2 cut(s)	201, 1114
MaeI	CTAG	2 cut(s)	893, 1031
MalI	GATC	6 cut(s)	289, 377, 468, 630, 870, 1191
MboI	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
MboII	GAAGA	9 cut(s)	383, 385, 545, 608, 800, 833, 863, 1160, 1211
MfeI	CAATTG	1 cut(s)	518
MflI	RGATCY	2 cut(s)	375, 1189
MluCI	AATT	5 cut(s)	518, 556, 799, 907, 1065
MlyI	GAGTC	2 cut(s)	413, 1148
MmeI	TCCRAC	2 cut(s)	600, 977
MnlI	CCTC	5 cut(s)	74, 181, 306, 549, 954
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	1025
MseI	TTAA	1 cut(s)	911
MslI	CAYNNNNRTG	3 cut(s)	99, 1020, 1113
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	3 cut(s)	337, 649, 1048
MwoI	GCNNNNNNNGC	2 cut(s)	514, 961
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
NlaIV	GGNNCC	1 cut(s)	837
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	3 cut(s)	98, 665, 861
PciI	ACATGT	2 cut(s)	661, 857
PciSI	GCTCTTC	3 cut(s)	528, 816, 1143
PctI	GAATGC	3 cut(s)	337, 649, 1048
PdmI	GAANNNNTTC	1 cut(s)	1025
PfeI	GAWTC	1 cut(s)	1160
PkrI	GCNGC	1 cut(s)	474
PleI	GAGTC	2 cut(s)	412, 1147
PpsI	GAGTC	2 cut(s)	412, 1147
PscI	ACATGT	2 cut(s)	661, 857
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	2 cut(s)	414, 847
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	2 cut(s)	375, 1189
RsaI	GTAC	4 cut(s)	350, 575, 837, 1119
RsaNI	GTAC	4 cut(s)	349, 574, 836, 1118
RseI	CAYNNNNRTG	3 cut(s)	99, 1020, 1113
SapI	GCTCTTC	3 cut(s)	528, 816, 1143
SaqAI	TTAA	1 cut(s)	911
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	6 cut(s)	287, 375, 466, 628, 868, 1189
Sau96I	GGNCC	2 cut(s)	414, 847
SchI	GAGTC	2 cut(s)	413, 1148
SfaNI	GCATC	2 cut(s)	201, 1114
SfcI	CTRYAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	3 cut(s)	99, 1020, 1113
Sse9I	AATT	5 cut(s)	518, 556, 799, 907, 1065
SsiI	CCGC	2 cut(s)	69, 993
SspI	AATATT	1 cut(s)	699
SspMI	CTAG	2 cut(s)	893, 1031
StyI	CCWWGG	2 cut(s)	243, 379
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	204, 880
TasI	AATT	5 cut(s)	518, 556, 799, 907, 1065
TatI	WGTACW	2 cut(s)	573, 1117
TfiI	GAWTC	1 cut(s)	1160
Tru1I	TTAA	1 cut(s)	911
Tru9I	TTAA	1 cut(s)	911
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	8 cut(s)	122, 384, 593, 830, 834, 1115, 1161, 1164
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	3 cut(s)	556, 907, 1065
XceI	RCATGY	3 cut(s)	98, 665, 861
XmiI	GTMKAC	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	1025
XspI	CTAG	2 cut(s)	893, 1031
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.