Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Forward (+)

14828013 .. 14828519

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0178600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCAGTCTTCGAGTCTCGATTTCGTTTACCACATCTTCGTCTCCGACGTCGCCGGCGATAAAGACTCCGCCGGAGCAGAATCCAGCCGGAAAAGGAAACTCCGAGACGATCGTCAGATGAGCGTCTCGTTTATCTGGAACGTCTTCAAAAAGTGCTACTGCTCTGACGACCGGTCAAGGCCAGTCGTCGACCTCGATTTCCGAACGGAAAGATTTAAAGATCTCGAGTACCGGCTGTTCACCGTCGTGGACGAGGACGACATCGGCATCGTTGATGAGATGGTTACCAAAGTTGGCCGTGTCCTTTACGGCGGGGCGAAGTTTGAGGAGGTTGACGAGATGGTGCACCAAATACGACGCGTCGTTGATGGAGCTTTCCGAACAGGATTGCGGCGGGAGAAGCTTGACGTCATGGTCACCGTCAAGAACCAAGTTGGACTGCTGGTTGATGAATATGAGAAGCAGTGCTTCGGGAGATCCAAGACCAAAGTTAGGGTTAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

168

Amino Acids

19.54

Weight (kDa)

7.68

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AatII	GACGTC	2 cut(s)	51, 411
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	360
AciI	CCGC	4 cut(s)	69, 312, 391, 394
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	48, 408
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	492
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	148
AhdI	GACNNNNNGTC	1 cut(s)	172
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	374, 403
AluI	AGCT	2 cut(s)	374, 403
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	4 cut(s)	20, 46, 99, 130
Alw44I	GTGCAC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	471
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	179, 295
ApaLI	GTGCAC	1 cut(s)	344
AsiGI	ACCGGT	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	232, 409
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	274, 334, 362
BceAI	ACGGC	2 cut(s)	282, 325
BcoDI	GTCTC	4 cut(s)	20, 46, 99, 130
BglII	AGATCT	1 cut(s)	220
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	48, 408
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse118I	RCCGGY	3 cut(s)	53, 171, 231
Bse1I	ACTGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	360
Bsh1285I	CGRYCG	2 cut(s)	112, 172
BshFI	GGCC	2 cut(s)	181, 297
BshTI	ACCGGT	1 cut(s)	171
BsiEI	CGRYCG	2 cut(s)	112, 172
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	5 cut(s)	54, 72, 88, 172, 232
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	4 cut(s)	20, 46, 99, 130
BsmBI	CGTCTC	3 cut(s)	46, 99, 130
BsnI	GGCC	2 cut(s)	181, 297
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	109, 220, 476
BspACI	CCGC	4 cut(s)	69, 312, 391, 394
BspANI	GGCC	2 cut(s)	181, 297
BspFNI	CGCG	1 cut(s)	360
BspPI	GGATC	1 cut(s)	471
BsrFI	RCCGGY	3 cut(s)	53, 171, 231
BsrI	ACTGG	1 cut(s)	182
BssAI	RCCGGY	3 cut(s)	53, 171, 231
BssMI	GATC	3 cut(s)	109, 220, 476
BssNI	GRCGYC	2 cut(s)	48, 408
Bst4CI	ACNGT	2 cut(s)	244, 421
BstACI	GRCGYC	2 cut(s)	48, 408
BstC8I	GCNNGC	1 cut(s)	55
BstEII	GGTNACC	2 cut(s)	283, 415
BstFNI	CGCG	1 cut(s)	360
BstKTI	GATC	3 cut(s)	112, 223, 479
BstMAI	GTCTC	4 cut(s)	20, 46, 99, 130
BstMBI	GATC	3 cut(s)	109, 220, 476
BstMCI	CGRYCG	2 cut(s)	112, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	111
BstPI	GGTNACC	2 cut(s)	283, 415
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	220, 476
BstYI	RGATCY	2 cut(s)	220, 476
BsuRI	GGCC	2 cut(s)	181, 297
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	3 cut(s)	53, 171, 231
CseI	GACGC	3 cut(s)	112, 349, 366
Csp6I	GTAC	1 cut(s)	229
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	6 cut(s)	87, 181, 235, 297, 374, 403
CviKI_1	RGCY	6 cut(s)	87, 181, 235, 297, 374, 403
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	3 cut(s)	111, 222, 478
DpnII	GATC	3 cut(s)	109, 220, 476
DraI	TTTAAA	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	224
Eco91I	GGTNACC	2 cut(s)	283, 415
EcoO65I	GGTNACC	2 cut(s)	283, 415
Esp3I	CGTCTC	3 cut(s)	46, 99, 130
FaeI	CATG	1 cut(s)	415
FaiI	YATR	2 cut(s)	413, 456
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	1 cut(s)	411
FauI	CCCGC	2 cut(s)	305, 387
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	181, 297
HapII	CCGG	5 cut(s)	54, 72, 88, 172, 232
HgaI	GACGC	3 cut(s)	112, 349, 366
Hin1I	GRCGYC	2 cut(s)	48, 408
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	2 cut(s)	190, 334
HindII	GTYRAC	2 cut(s)	190, 334
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	13, 65, 80
HpaII	CCGG	5 cut(s)	54, 72, 88, 172, 232
HphI	GGTGA	2 cut(s)	232, 409
Hpy166II	GTNNAC	6 cut(s)	28, 190, 240, 250, 334, 346
Hpy188I	TCNGA	6 cut(s)	46, 104, 117, 166, 203, 380
Hpy188III	TCNNGA	5 cut(s)	17, 136, 224, 424, 472
Hpy8I	GTNNAC	6 cut(s)	28, 190, 240, 250, 334, 346
Hpy99I	CGWCG	6 cut(s)	50, 53, 191, 248, 360, 365
HpyCH4III	ACNGT	2 cut(s)	244, 421
HpyCH4IV	ACGT	3 cut(s)	48, 141, 408
HpyCH4V	TGCA	2 cut(s)	4, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpySE526I	ACGT	3 cut(s)	48, 141, 408
Hsp92I	GRCGYC	2 cut(s)	48, 408
Hsp92II	CATG	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	109, 220, 476
LmnI	GCTCC	2 cut(s)	74, 371
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	3 cut(s)	48, 141, 408
MaeIII	GTNAC	2 cut(s)	283, 415
MalI	GATC	3 cut(s)	111, 222, 478
MboI	GATC	3 cut(s)	109, 220, 476
MboII	GAAGA	2 cut(s)	28, 136
MflI	RGATCY	2 cut(s)	220, 476
MhlI	GDGCHC	1 cut(s)	348
MluI	ACGCGT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	22, 59
MmeI	TCCRAC	2 cut(s)	69, 415
MnlI	CCTC	4 cut(s)	203, 247, 319, 322
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	5 cut(s)	54, 72, 88, 172, 232
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	400
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	109, 220, 476
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 54, 192
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	393
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	21, 59
PpsI	GAGTC	2 cut(s)	21, 59
PshAI	GACNNNNGTC	1 cut(s)	111
PspEI	GGTNACC	2 cut(s)	283, 415
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PsuI	RGATCY	2 cut(s)	220, 476
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	109, 220, 476
SchI	GAGTC	2 cut(s)	22, 59
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	7 cut(s)	51, 144, 195, 333, 376, 405, 411
SfaNI	GCATC	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	224
SgrAI	CRCCGGYG	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	4 cut(s)	69, 312, 391, 394
TaaI	ACNGT	2 cut(s)	244, 421
TaiI	ACGT	3 cut(s)	51, 144, 411
TaqI	TCGA	5 cut(s)	11, 18, 189, 195, 225
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	143
ZraI	GACGTC	2 cut(s)	49, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.