Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0008675

Physical Location & Seq

Genomic Coordinates Reverse (-)

103589 .. 107197

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

atggtgggatttagacaaggattgctcaaacaaattgtgggtgaccttgctttcgtcgactcctcacccttcgggaagcttttggactcctgcattcgtaccaagtccgcgcgtgatgcccgtcgcgtccacgcccgcgtcatcaaaacccagttttcttcagaggttttcatccagaacaggctcatcgacgcgtatgggaaatgtggttcattcgatgatgcacgtaaggtgtttgataaaatgcctgagaggaacactttcagttggaactgcatcattaccgcatttatgaagttgggttttgttgatgaggctttgcagagttttaggtcgatgccggagcccgaccagtgctcatggaactcgatggtttcggggtttgcacagcatggtcgctttgaacaagctttggaatattttgttaacatgcatggggatgattttgttctgaatgaatatacgttcggtagcgctcttagtgcttgtgcgggcttaagagagctgaaaatgggtgtccaaattcatggtttcattgcgaaatcttgttactcttcagatgtttatatggggtctgcacttattgatatgtactcgaaatgtgggaatgttgcttttgcacaaagggtatttgattgcatgagtgtgcgaaatgttgtttcttggaacagtttgattacttgttatgagcaaaatggtccagcaagcgaagccgtacaagtgtttctgaggatgatggattgtgggttcgaaccggatgagttgactttagccagtatggtaagtgcttgtgcgagcttgtccgcagtgaaagaaggtcaacaaatacatgcttgcgttatgaaatgtgataaatacaggaacgatgttgtattgggaaatgcattagttgatatgtatgcaaaatgcaacagaataaatgaggccagaagggttttcgatgggatgtctatcagaaatgtggtctcagaaacttccatagtaagtggatatgcaaaggcggcaagtgtagaagttgcaaggtcgttgtttacaaagatgatggagaggaatgtagtctcttggaatgcactcattgcagggtacacacagaatggagagaatgaagaggcccttggactctttctcctcttgaaaagagagtctgtttggcccacccactacacatttgcaaatctactcaatgcttgtgcaagtcttgttgatctgcagcttggcaagcaagctcattcacacatattgaagcatggttttcaattccaggttggtgaagagcctgatatatttgttggaaattctctaatagatatgtacatgaaatgtgggtctattgaagatggctgtcaggtgtttagaaatatgttggaaagggatcatgtctcatggaatgctatgattgtgggacatgcgcaaaatggttatgggactgaagctcttgaaatatttagaaaaatgctggtatcaggggagcaaccagaccatgttactatgattggtgttctatgtgcttgtagccacgcaggattggttgaagaggggagaaatattttttacacaatgaatgaagagcacggggtggtaccattgaaggaccattatacatgtatggttgatctacttggtcgagcgggttgccttgacgaagctaagaatttaatagaggtcatgccaatgcaacccgatgctgttatatggggttctttgcttgctgcttgtaaagttcatcgtaacattaacttggggaaatatgtggcggagaagctgttagctattgaaccaaggaattctggaccttatgttcttctctcaaacatgtatgctgagcttgggagatggagtgatgttgtaagagtaaggaagctgatgaggcaacggggggttgtcaagcagccgggttgcagttggattgaaatacagggtcttctgaatgttttcctggtgaaagataaaaggcattgtcaaaaaaatgaaatctattgtcttttgaatttgctcacagaacaaatgaagcgacatggatatgtacaagatgctggtgactacgagtcttatgaagagcaagctgaatctcaactaacttcatttttcgaaatggatatgtcagaagatgtagctgttctttcattgccttattgcaatactgatttgggttttctttcgtatgtttttctagagatggagggcggttttgctgatgagctttactcagaaagtttacagctatcaaaattgcaattgggttccacatcgaatgtcaccagtatacaaagtggtttagatgatcatgttaaggttcagttgtcagatgaagatggatcttcatggtgtggttctgataacgaagtgaatgaagcctctgatatggacaaggaatggcagaggagacgtgaccaattccatacgatgggataccgtgacggtgttatagccggtgttatggccggaaaggaagcttcttctcaggagggattcaatattggctttaagcaatcagtccttgttggttacaactggggtcttgtgagaggtgttacaagggagaagttgattgaaacagaagaacaaagaactcgatttcagggattgtatgaatctgttcattccctttctacaacagatgcccttgggttgtttaacgatgaaatcacaagtaaaaatgacagagaacaagttgaaagttcagagactagttcttttgaagttgaaactggtctggaagagcaaagatttgacctcagtggtctaggaaattactctgcaaagctccgttcacttcttttggagtcgcctggaatcaaagtcaagttcccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009451 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0023052 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

937

Amino Acids

105.01

Weight (kDa)

5.23

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13600
fragaria_vesca	FvH4_7g02360 FvH4_7g02360
malus_domestica	MD02G1294800.v1.1 MD07G1031100.v1.1 MD07G1032100.v1.1
prunus_persica	Prupe.7G009700_v2.0.a1
pyrus_communis	pycom07g02270
rosa_chinensis	RchiOBHm_Chr1g0319691 RchiOBHm_Chr7g0218591
rosa_laevigata	RLG00000002327 RLG00000030463
rosa_multiflora	Rmu_sc0001301.1_g000024
rosa_roxburghii	Rroxscaffold_3G00240770
rosa_rugosa	Rorug01G0029400 Rorug07G0178600
rosa_samantha	Rh1BG038400 Rh7AG319700 Rh7BG311700 Rh7CG336600 Rh7DG318700
rosa_wichuraiana	Rw0G015750 Rw7G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1410
Acc65I	GGTACC	1 cut(s)	1579
AccB1I	GGYRCC	1 cut(s)	1579
AccB7I	CCANNNNNTGG	1 cut(s)	2404
AccBSI	CCGCTC	1 cut(s)	1628
AccI	GTMKAC	2 cut(s)	57, 2263
AccII	CGCG	5 cut(s)	110, 112, 126, 138, 194
AciI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
AclWI	GGATC	2 cut(s)	1380, 2323
AcoI	YGGCCR	1 cut(s)	2439
AcsI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
AcuI	CTGAAG	3 cut(s)	144, 540, 1449
AdeI	CACNNNGTG	1 cut(s)	1576
AfaI	GTAC	7 cut(s)	100, 593, 717, 1085, 1313, 1581, 2025
AfeI	AGCGCT	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	2404
AflII	CTTAAG	1 cut(s)	496
AflIII	ACRYGT	3 cut(s)	192, 1601, 1812
AhdI	GACNNNNNGTC	1 cut(s)	2044
AhlI	ACTAGT	1 cut(s)	2687
AjiI	CACGTC	1 cut(s)	2387
AjnI	CCWGG	3 cut(s)	1260, 1935, 2788
AjuI	GAANNNNNNNTTGG	2 cut(s)	1098, 1130
AloI	GAACNNNNNNTCC	6 cut(s)	193, 225, 731, 763, 1782, 1814
Alw21I	GWGCWC	2 cut(s)	359, 1572
Alw26I	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
AlwI	GGATC	2 cut(s)	1380, 2323
Aor51HI	AGCGCT	1 cut(s)	475
AoxI	GGCC	4 cut(s)	924, 1110, 1151, 2439
ApeKI	GCWGC	3 cut(s)	1210, 1709, 1888
ApoI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	3 cut(s)	260, 1931, 2595
Asp718I	GGTACC	1 cut(s)	1579
AspLEI	GCGC	3 cut(s)	112, 476, 1411
AspS9I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
AsuC2I	CCSGG	1 cut(s)	1893
AsuHPI	GGTGA	6 cut(s)	53, 57, 1280, 1951, 2048, 2248
AsuII	TTCGAA	2 cut(s)	750, 2088
AvaII	GGWCC	3 cut(s)	698, 1591, 1790
BanI	GGYRCC	1 cut(s)	1579
BanII	GRGCYC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	1913
Bbv12I	GWGCWC	2 cut(s)	359, 1572
BbvI	GCAGC	3 cut(s)	1222, 1696, 1900
BccI	CCATC	9 cut(s)	364, 730, 935, 1036, 1331, 1827, 2170, 2306, 2398
BceAI	ACGGC	1 cut(s)	698
BcgI	CGANNNNNNTGC	2 cut(s)	1614, 1648
BciT130I	CCWGG	3 cut(s)	1262, 1937, 2790
BciVI	GTATCC	1 cut(s)	2402
BclI	TGATCA	1 cut(s)	2281
BcnI	CCSGG	1 cut(s)	1893
BcoDI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BcuI	ACTAGT	1 cut(s)	2687
BfaI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
BfmI	CTRYAG	1 cut(s)	1208
BfoI	RGCGCY	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	2402
BisI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
BlpI	GCTNAGC	1 cut(s)	1821
BlsI	GCNGC	4 cut(s)	1003, 1212, 1711, 1890
Bme1390I	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
Bme18I	GGWCC	3 cut(s)	698, 1591, 1790
BmeRI	GACNNNNNGTC	1 cut(s)	2044
BmgBI	CACGTC	1 cut(s)	2387
BmgT120I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
BmiI	GGNNCC	3 cut(s)	345, 1581, 2242
BmrFI	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
BmrI	ACTGGG	2 cut(s)	145, 2521
BmsI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
BmuI	ACTGGG	2 cut(s)	145, 2521
BpiI	GAAGAC	1 cut(s)	1913
BplI	GAGNNNNNCTC	2 cut(s)	2189, 2221
Bpu1102I	GCTNAGC	1 cut(s)	1821
Bpu14I	TTCGAA	2 cut(s)	750, 2088
BpuMI	CCSGG	1 cut(s)	1893
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	950
BsaI	GGTCTC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	1114, 1778, 2623
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	6 cut(s)	1110, 1140, 1748, 1778, 1822, 1852
Bsc4I	CCNNNNNNNGG	1 cut(s)	2404
Bse118I	RCCGGY	1 cut(s)	2429
Bse1I	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
Bse3DI	GCAATG	3 cut(s)	534, 1074, 2123
Bse8I	GATNNNNATC	1 cut(s)	950
BseBI	CCWGG	3 cut(s)	1262, 1937, 2790
BseDI	CCNNGG	3 cut(s)	1114, 1778, 2623
BseGI	GGATG	5 cut(s)	171, 445, 738, 763, 951
BseJI	GATNNNNATC	1 cut(s)	950
BseLI	CCNNNNNNNGG	1 cut(s)	2404
BseMI	GCAATG	3 cut(s)	534, 1074, 2123
BseMII	CTCAG	7 cut(s)	240, 719, 981, 1812, 2220, 2474, 2749
BseNI	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
BseRI	GAGGAG	3 cut(s)	52, 1118, 2395
BseXI	GCAGC	3 cut(s)	1222, 1696, 1900
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	5 cut(s)	110, 112, 126, 138, 194
BshFI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BshNI	GGYRCC	1 cut(s)	1579
BsiHKAI	GWGCWC	2 cut(s)	359, 1572
BsiSI	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
BslFI	GGGAC	2 cut(s)	1416, 1438
BslI	CCNNNNNNNGG	1 cut(s)	2404
BsmAI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BsmBI	CGTCTC	1 cut(s)	2377
BsmFI	GGGAC	2 cut(s)	1416, 1438
BsmI	GAATGC	3 cut(s)	93, 1072, 1393
BsnI	GGCC	4 cut(s)	926, 1112, 1153, 2441
Bso31I	GGTCTC	1 cut(s)	970
Bsp119I	TTCGAA	2 cut(s)	750, 2088
Bsp1286I	GDGCHC	3 cut(s)	348, 359, 1572
Bsp1407I	TGTACA	2 cut(s)	1311, 2023
Bsp143I	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
Bsp1720I	GCTNAGC	1 cut(s)	1821
BspACI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
BspANI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BspCNI	CTCAG	7 cut(s)	241, 720, 980, 1813, 2219, 2473, 2748
BspFNI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BspLI	GGNNCC	3 cut(s)	345, 1581, 2242
BspMAI	CTGCAG	1 cut(s)	1212
BspPI	GGATC	2 cut(s)	1380, 2323
BspQI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
BspT104I	TTCGAA	2 cut(s)	750, 2088
BspT107I	GGYRCC	1 cut(s)	1579
BspTI	CTTAAG	1 cut(s)	496
BspTNI	GGTCTC	1 cut(s)	970
BsrBI	CCGCTC	1 cut(s)	1628
BsrDI	GCAATG	3 cut(s)	534, 1074, 2123
BsrFI	RCCGGY	1 cut(s)	2429
BsrGI	TGTACA	2 cut(s)	1311, 2023
BsrI	ACTGG	6 cut(s)	151, 352, 774, 2259, 2516, 2713
BssAI	RCCGGY	1 cut(s)	2429
BssECI	CCNNGG	3 cut(s)	1114, 1778, 2623
BssMI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
BssNAI	GTATAC	1 cut(s)	2264
BssT1I	CCWWGG	3 cut(s)	1114, 1778, 2623
Bst1107I	GTATAC	1 cut(s)	2264
Bst2UI	CCWGG	3 cut(s)	1262, 1937, 2790
Bst4CI	ACNGT	3 cut(s)	671, 2414, 2420
Bst6I	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstAUI	TGTACA	2 cut(s)	1311, 2023
BstBAI	YACGTR	1 cut(s)	227
BstBI	TTCGAA	2 cut(s)	750, 2088
BstC8I	GCNNGC	9 cut(s)	136, 493, 706, 796, 835, 1220, 1224, 1707, 2061
BstDEI	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	5 cut(s)	171, 445, 738, 763, 951
BstFNI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	3 cut(s)	112, 476, 1411
BstKTI	GATC	5 cut(s)	1207, 1375, 1615, 2284, 2318
BstMAI	GTCTC	5 cut(s)	970, 1063, 1384, 2377, 2678
BstMBI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
BstNI	CCWGG	3 cut(s)	1262, 1937, 2790
BstNSI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	1260, 1891, 1935, 2788
BstSFI	CTRYAG	1 cut(s)	1208
BstUI	CGCG	5 cut(s)	110, 112, 126, 138, 194
BstV1I	GCAGC	3 cut(s)	1222, 1696, 1900
BstV2I	GAAGAC	1 cut(s)	1913
BstX2I	RGATCY	1 cut(s)	2315
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	2315
BstZ17I	GTATAC	1 cut(s)	2264
BsuI	GTATCC	1 cut(s)	2402
BsuRI	GGCC	4 cut(s)	926, 1112, 1153, 2441
BtrI	CACGTC	1 cut(s)	2387
BtsCI	GGATG	5 cut(s)	171, 445, 738, 763, 951
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	3 cut(s)	359, 813, 2743
Cac8I	GCNNGC	9 cut(s)	136, 493, 706, 796, 835, 1220, 1224, 1707, 2061
CfoI	GCGC	3 cut(s)	112, 476, 1411
Cfr10I	RCCGGY	1 cut(s)	2429
Cfr13I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
CseI	GACGC	3 cut(s)	115, 127, 200
Csp6I	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
CviQI	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
DdeI	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
DpnI	GATC	5 cut(s)	1206, 1374, 1614, 2283, 2317
DpnII	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
DraIII	CACNNNGTG	1 cut(s)	1576
DriI	GACNNNNNGTC	1 cut(s)	2044
EaeI	YGGCCR	1 cut(s)	2439
Eam1104I	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
Eam1105I	GACNNNNNGTC	1 cut(s)	2044
EarI	CTCTTC	7 cut(s)	559, 1101, 1266, 1527, 1560, 2049, 2712
EciI	GGCGGA	1 cut(s)	1769
Eco130I	CCWWGG	3 cut(s)	1114, 1778, 2623
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	970
Eco47I	GGWCC	3 cut(s)	698, 1591, 1790
Eco47III	AGCGCT	1 cut(s)	475
Eco57I	CTGAAG	3 cut(s)	144, 540, 1449
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	1111
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	1783
EcoRII	CCWGG	3 cut(s)	1260, 1935, 2788
EcoT14I	CCWWGG	3 cut(s)	1114, 1778, 2623
EcoT22I	ATGCAT	2 cut(s)	435, 886
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	3 cut(s)	1114, 1778, 2623
Esp3I	CGTCTC	1 cut(s)	2377
FalI	AAGNNNNNCTT	2 cut(s)	1098, 1130
FaqI	GGGAC	2 cut(s)	1416, 1438
FauI	CCCGC	3 cut(s)	143, 484, 1621
FbaI	TGATCA	1 cut(s)	2281
FblI	GTMKAC	2 cut(s)	57, 2263
Fnu4HI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
FokI	GGATG	5 cut(s)	158, 452, 745, 770, 958
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
FspBI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
FspI	TGCGCA	1 cut(s)	1410
GlaI	GCGC	3 cut(s)	111, 475, 1410
GluI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
HaeII	RGCGCY	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	926, 1112, 1153, 2441
HapII	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
HgaI	GACGC	3 cut(s)	115, 127, 200
HhaI	GCGC	3 cut(s)	112, 476, 1411
Hin6I	GCGC	3 cut(s)	110, 474, 1409
HinP1I	GCGC	3 cut(s)	110, 474, 1409
HincII	GTYRAC	4 cut(s)	58, 427, 765, 821
HindII	GTYRAC	4 cut(s)	58, 427, 765, 821
HindIII	AAGCTT	3 cut(s)	77, 408, 2451
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
HphI	GGTGA	6 cut(s)	53, 57, 1280, 1951, 2048, 2248
Hpy188III	TCNNGA	8 cut(s)	73, 175, 1132, 1436, 1788, 2171, 2462, 2714
Hpy99I	CGWCG	3 cut(s)	59, 126, 194
HpyAV	CCTTC	4 cut(s)	79, 809, 924, 1582
HpyCH4III	ACNGT	3 cut(s)	671, 2414, 2420
HpyCH4IV	ACGT	3 cut(s)	226, 464, 2386
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
HpyF3I	CTNAG	9 cut(s)	249, 479, 728, 967, 1647, 1821, 2206, 2460, 2735
HpySE526I	ACGT	3 cut(s)	226, 464, 2386
HspAI	GCGC	3 cut(s)	110, 474, 1409
KpnI	GGTACC	1 cut(s)	1583
Ksp22I	TGATCA	1 cut(s)	2281
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
LguI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
LmnI	GCTCC	3 cut(s)	343, 1468, 2769
Lsp1109I	GCAGC	3 cut(s)	1222, 1696, 1900
LweI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
MaeI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
MaeII	ACGT	3 cut(s)	226, 464, 2386
MalI	GATC	5 cut(s)	1206, 1374, 1614, 2283, 2317
MbiI	CCGCTC	1 cut(s)	1628
MboI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
MfeI	CAATTG	1 cut(s)	2234
MflI	RGATCY	1 cut(s)	2315
MhlI	GDGCHC	3 cut(s)	348, 359, 1572
MluI	ACGCGT	1 cut(s)	192
MlyI	GAGTC	6 cut(s)	53, 80, 1113, 1151, 2054, 2792
MmeI	TCCRAC	4 cut(s)	248, 1270, 1344, 1883
Mph1103I	ATGCAT	2 cut(s)	435, 886
MroXI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
MseI	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
MslI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
MspCI	CTTAAG	1 cut(s)	496
MspI	CCGG	5 cut(s)	341, 755, 1892, 2430, 2442
MspR9I	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
MunI	CAATTG	1 cut(s)	2234
Mva1269I	GAATGC	3 cut(s)	93, 1072, 1393
MvaI	CCWGG	3 cut(s)	1262, 1937, 2790
MvnI	CGCG	5 cut(s)	110, 112, 126, 138, 194
MwoI	GCNNNNNNNGC	7 cut(s)	116, 482, 710, 1001, 1076, 1219, 1867
NciI	CCSGG	1 cut(s)	1893
NdeII	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
NlaIV	GGNNCC	3 cut(s)	345, 1581, 2242
NmuCI	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
NsbI	TGCGCA	1 cut(s)	1410
NsiI	ATGCAT	2 cut(s)	435, 886
NspI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
NspV	TTCGAA	2 cut(s)	750, 2088
PciI	ACATGT	2 cut(s)	1601, 1812
PciSI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
PctI	GAATGC	3 cut(s)	93, 1072, 1393
PdmI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
PfeI	GAWTC	4 cut(s)	2066, 2469, 2591, 2793
PflMI	CCANNNNNTGG	1 cut(s)	2404
PkrI	GCNGC	4 cut(s)	1003, 1212, 1711, 1890
PleI	GAGTC	6 cut(s)	53, 80, 1113, 1150, 2053, 2791
PpsI	GAGTC	6 cut(s)	53, 80, 1113, 1150, 2053, 2791
Ppu21I	YACGTR	1 cut(s)	227
PscI	ACATGT	2 cut(s)	1601, 1812
Psp6I	CCWGG	3 cut(s)	1260, 1935, 2788
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	1260, 1935, 2788
PspN4I	GGNNCC	3 cut(s)	345, 1581, 2242
PspPI	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
PstI	CTGCAG	1 cut(s)	1212
PsuI	RGATCY	1 cut(s)	2315
RsaI	GTAC	7 cut(s)	100, 593, 717, 1085, 1313, 1581, 2025
RsaNI	GTAC	7 cut(s)	99, 592, 716, 1084, 1312, 1580, 2024
RseI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
SalI	GTCGAC	1 cut(s)	56
SapI	GCTCTTC	4 cut(s)	1266, 1560, 2049, 2712
SaqAI	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
SatI	GCNGC	4 cut(s)	1002, 1211, 1710, 1889
Sau3AI	GATC	5 cut(s)	1204, 1372, 1612, 2281, 2315
Sau96I	GGNCC	5 cut(s)	698, 1111, 1152, 1591, 1790
SchI	GAGTC	6 cut(s)	53, 80, 1113, 1151, 2054, 2792
ScrFI	CCNGG	4 cut(s)	1262, 1893, 1937, 2790
SduI	GDGCHC	3 cut(s)	348, 359, 1572
SfaNI	GCATC	7 cut(s)	106, 211, 285, 327, 1672, 2020, 2608
SfcI	CTRYAG	1 cut(s)	1208
SfuI	TTCGAA	2 cut(s)	750, 2088
SinI	GGWCC	3 cut(s)	698, 1591, 1790
SmiMI	CAYNNNNRTG	4 cut(s)	438, 644, 1670, 2019
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SpeI	ACTAGT	1 cut(s)	2687
SsiI	CCGC	9 cut(s)	108, 136, 285, 491, 804, 1001, 1628, 1754, 2184
SspI	AATATT	4 cut(s)	419, 1443, 1546, 2476
SspMI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
StyD4I	CCNGG	4 cut(s)	1260, 1891, 1935, 2788
StyI	CCWWGG	3 cut(s)	1114, 1778, 2623
TaaI	ACNGT	3 cut(s)	671, 2414, 2420
TaiI	ACGT	3 cut(s)	229, 467, 2389
TatI	WGTACW	3 cut(s)	591, 1311, 2023
TauI	GCSGC	1 cut(s)	1004
TfiI	GAWTC	4 cut(s)	2066, 2469, 2591, 2793
Tru1I	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
Tru9I	TTAA	7 cut(s)	426, 497, 1655, 1734, 2289, 2484, 2634
TscAI	CASTG	3 cut(s)	359, 813, 2743
TseFI	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
TseI	GCWGC	3 cut(s)	1210, 1709, 1888
Tsp45I	GTSAC	5 cut(s)	41, 2036, 2254, 2387, 2414
TspGWI	ACGGA	1 cut(s)	2756
TspRI	CASTG	3 cut(s)	359, 813, 2743
Van91I	CCANNNNNTGG	1 cut(s)	2404
Vha464I	CTTAAG	1 cut(s)	496
VpaK11BI	GGWCC	3 cut(s)	698, 1591, 1790
XapI	RAATTY	5 cut(s)	522, 1294, 1651, 1783, 1987
XbaI	TCTAGA	1 cut(s)	2170
XceI	RCATGY	5 cut(s)	433, 833, 1409, 1605, 1816
XmiI	GTMKAC	2 cut(s)	57, 2263
XmnI	GAANNNNTTC	3 cut(s)	260, 1931, 2595
XspI	CTAG	4 cut(s)	2171, 2688, 2744, 2812
Zsp2I	ATGCAT	2 cut(s)	435, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.