Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 10 - 101 | 6.7e-20 | Rx N-terminal domain |
| NB-ARC | PF00931 | 180 - 351 | 2e-38 | NB-ARC domain |
| WHD_DRP | PF23559 | 437 - 518 | 1.4e-21 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 555 - 761 | 2.4e-07 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 557 - 678 | 1.9e-35 | R13L1/DRL21 LRRs |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 425, 1326, 1541, 1958 |
| Acc16I | TGCGCA | 1 cut(s) | 1160 |
| Acc65I | GGTACC | 1 cut(s) | 331 |
| AccB1I | GGYRCC | 1 cut(s) | 331 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1994 |
| AccI | GTMKAC | 1 cut(s) | 522 |
| AccII | CGCG | 1 cut(s) | 943 |
| AciI | CCGC | 3 cut(s) | 280, 2070, 2555 |
| AclWI | GGATC | 2 cut(s) | 891, 913 |
| AcsI | RAATTY | 7 cut(s) | 365, 416, 833, 1690, 1942, 2184, 2450 |
| AcuI | CTGAAG | 6 cut(s) | 140, 291, 603, 1670, 2138, 2562 |
| AfaI | GTAC | 5 cut(s) | 333, 347, 656, 1972, 2625 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 697, 1994, 2399, 2546, 2702 |
| AflII | CTTAAG | 2 cut(s) | 809, 1283 |
| AflIII | ACRYGT | 2 cut(s) | 941, 1973 |
| AhlI | ACTAGT | 1 cut(s) | 1789 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| Alw21I | GWGCWC | 2 cut(s) | 25, 222 |
| Alw26I | GTCTC | 3 cut(s) | 183, 1157, 1441 |
| AlwI | GGATC | 2 cut(s) | 891, 913 |
| Ama87I | CYCGRG | 2 cut(s) | 1438, 2573 |
| AoxI | GGCC | 3 cut(s) | 994, 2093, 2936 |
| ApeKI | GCWGC | 6 cut(s) | 139, 239, 315, 1133, 1999, 2206 |
| ApoI | RAATTY | 7 cut(s) | 365, 416, 833, 1690, 1942, 2184, 2450 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1347, 2535 |
| Asp718I | GGTACC | 1 cut(s) | 331 |
| AspLEI | GCGC | 4 cut(s) | 285, 320, 1161, 2413 |
| AspS9I | GGNCC | 2 cut(s) | 1466, 2937 |
| AsuC2I | CCSGG | 1 cut(s) | 2872 |
| AsuHPI | GGTGA | 4 cut(s) | 1324, 1480, 1516, 1820 |
| AsuNHI | GCTAGC | 1 cut(s) | 1360 |
| AvaI | CYCGRG | 2 cut(s) | 1438, 2573 |
| AvaII | GGWCC | 1 cut(s) | 1466 |
| BaeGI | GKGCMC | 1 cut(s) | 1904 |
| BanI | GGYRCC | 1 cut(s) | 331 |
| BanII | GRGCYC | 3 cut(s) | 25, 222, 916 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2838, 2870 |
| BbsI | GAAGAC | 1 cut(s) | 1115 |
| Bbv12I | GWGCWC | 2 cut(s) | 25, 222 |
| BbvI | GCAGC | 6 cut(s) | 126, 226, 327, 1145, 2011, 2193 |
| BccI | CCATC | 7 cut(s) | 557, 1733, 2398, 2497, 2566, 2674, 2762 |
| BceAI | ACGGC | 1 cut(s) | 1621 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BclI | TGATCA | 2 cut(s) | 298, 2808 |
| BcnI | CCSGG | 1 cut(s) | 2872 |
| BcoDI | GTCTC | 3 cut(s) | 183, 1157, 1441 |
| BcuI | ACTAGT | 1 cut(s) | 1789 |
| BfaI | CTAG | 9 cut(s) | 11, 404, 788, 1169, 1361, 1433, 1790, 2021, 2318 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BfrI | CTTAAG | 2 cut(s) | 809, 1283 |
| BglII | AGATCT | 3 cut(s) | 790, 1078, 2102 |
| BisI | GCNGC | 8 cut(s) | 140, 240, 281, 316, 1134, 2000, 2207, 2555 |
| BlsI | GCNGC | 8 cut(s) | 141, 241, 282, 317, 1135, 2001, 2208, 2556 |
| Bme1390I | CCNGG | 2 cut(s) | 329, 2872 |
| Bme18I | GGWCC | 1 cut(s) | 1466 |
| BmeT110I | CYCGRG | 2 cut(s) | 1438, 2573 |
| BmgT120I | GGNCC | 2 cut(s) | 1466, 2937 |
| BmiI | GGNNCC | 3 cut(s) | 333, 913, 1467 |
| BmrFI | CCNGG | 2 cut(s) | 329, 2872 |
| BmsI | GCATC | 9 cut(s) | 157, 474, 565, 652, 761, 968, 1045, 1735, 2398 |
| BmtI | GCTAGC | 1 cut(s) | 1364 |
| BpiI | GAAGAC | 1 cut(s) | 1115 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 12, 44 |
| BpmI | CTGGAG | 3 cut(s) | 39, 930, 1865 |
| BpuEI | CTTGAG | 6 cut(s) | 233, 1783, 1865, 2081, 2516, 2816 |
| BpuMI | CCSGG | 1 cut(s) | 2872 |
| Bsa29I | ATCGAT | 1 cut(s) | 58 |
| BsaAI | YACGTR | 1 cut(s) | 2366 |
| BsaI | GGTCTC | 2 cut(s) | 183, 1157 |
| BsaJI | CCNNGG | 4 cut(s) | 91, 171, 916, 1144 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 697, 1994, 2399, 2546, 2702 |
| Bse1I | ACTGG | 1 cut(s) | 2532 |
| Bse3DI | GCAATG | 1 cut(s) | 552 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseCI | ATCGAT | 1 cut(s) | 58 |
| BseDI | CCNNGG | 4 cut(s) | 91, 171, 916, 1144 |
| BseGI | GGATG | 9 cut(s) | 262, 442, 489, 718, 1072, 2409, 2413, 2588, 2685 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 697, 1994, 2399, 2546, 2702 |
| BseMI | GCAATG | 1 cut(s) | 552 |
| BseMII | CTCAG | 2 cut(s) | 1728, 2362 |
| BseNI | ACTGG | 1 cut(s) | 2532 |
| BseRI | GAGGAG | 4 cut(s) | 22, 188, 230, 2714 |
| BseSI | GKGCMC | 1 cut(s) | 1904 |
| BseXI | GCAGC | 6 cut(s) | 126, 226, 327, 1145, 2011, 2193 |
| BsgI | GTGCAG | 1 cut(s) | 2489 |
| Bsh1236I | CGCG | 1 cut(s) | 943 |
| BshFI | GGCC | 3 cut(s) | 996, 2095, 2938 |
| BshNI | GGYRCC | 1 cut(s) | 331 |
| BshVI | ATCGAT | 1 cut(s) | 58 |
| BsiHKAI | GWGCWC | 2 cut(s) | 25, 222 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1438, 2573 |
| BsiSI | CCGG | 1 cut(s) | 2872 |
| BslFI | GGGAC | 2 cut(s) | 545, 2796 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 697, 1994, 2399, 2546, 2702 |
| BsmAI | GTCTC | 3 cut(s) | 183, 1157, 1441 |
| BsmFI | GGGAC | 2 cut(s) | 545, 2796 |
| BsmI | GAATGC | 1 cut(s) | 2478 |
| BsnI | GGCC | 3 cut(s) | 996, 2095, 2938 |
| Bso31I | GGTCTC | 2 cut(s) | 183, 1157 |
| BsoBI | CYCGRG | 2 cut(s) | 1438, 2573 |
| Bsp1286I | GDGCHC | 4 cut(s) | 25, 222, 916, 1904 |
| Bsp1407I | TGTACA | 3 cut(s) | 654, 1970, 2623 |
| Bsp19I | CCATGG | 1 cut(s) | 916 |
| BspACI | CCGC | 3 cut(s) | 280, 2070, 2555 |
| BspANI | GGCC | 3 cut(s) | 996, 2095, 2938 |
| BspCNI | CTCAG | 2 cut(s) | 1727, 2361 |
| BspDI | ATCGAT | 1 cut(s) | 58 |
| BspFNI | CGCG | 1 cut(s) | 943 |
| BspLI | GGNNCC | 3 cut(s) | 333, 913, 1467 |
| BspMAI | CTGCAG | 1 cut(s) | 244 |
| BspOI | GCTAGC | 1 cut(s) | 1364 |
| BspPI | GGATC | 2 cut(s) | 891, 913 |
| BspT107I | GGYRCC | 1 cut(s) | 331 |
| BspTI | CTTAAG | 2 cut(s) | 809, 1283 |
| BspTNI | GGTCTC | 2 cut(s) | 183, 1157 |
| BsrDI | GCAATG | 1 cut(s) | 552 |
| BsrGI | TGTACA | 3 cut(s) | 654, 1970, 2623 |
| BsrI | ACTGG | 1 cut(s) | 2532 |
| BssECI | CCNNGG | 4 cut(s) | 91, 171, 916, 1144 |
| BssT1I | CCWWGG | 2 cut(s) | 916, 1144 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 5 cut(s) | 199, 1399, 1820, 2444, 2805 |
| Bst6I | CTCTTC | 2 cut(s) | 672, 981 |
| BstAFI | CTTAAG | 2 cut(s) | 809, 1283 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 749, 1037 |
| BstAUI | TGTACA | 3 cut(s) | 654, 1970, 2623 |
| BstBAI | YACGTR | 1 cut(s) | 2366 |
| BstC8I | GCNNGC | 5 cut(s) | 287, 1245, 1362, 2204, 2612 |
| BstDEI | CTNAG | 5 cut(s) | 728, 1714, 1871, 2334, 2348 |
| BstDSI | CCRYGG | 2 cut(s) | 91, 916 |
| BstF5I | GGATG | 9 cut(s) | 262, 442, 489, 718, 1072, 2409, 2413, 2588, 2685 |
| BstFNI | CGCG | 1 cut(s) | 943 |
| BstHHI | GCGC | 4 cut(s) | 285, 320, 1161, 2413 |
| BstMAI | GTCTC | 3 cut(s) | 183, 1157, 1441 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 217, 286, 324, 749, 1037, 1754, 1849, 2212 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstNSI | RCATGY | 3 cut(s) | 324, 1040, 1977 |
| BstSCI | CCNGG | 2 cut(s) | 327, 2870 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstSLI | GKGCMC | 1 cut(s) | 1904 |
| BstSNI | TACGTA | 1 cut(s) | 2366 |
| BstUI | CGCG | 1 cut(s) | 943 |
| BstV1I | GCAGC | 6 cut(s) | 126, 226, 327, 1145, 2011, 2193 |
| BstV2I | GAAGAC | 1 cut(s) | 1115 |
| BstX2I | RGATCY | 5 cut(s) | 790, 883, 905, 1078, 2102 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1251 |
| BstYI | RGATCY | 5 cut(s) | 790, 883, 905, 1078, 2102 |
| Bsu15I | ATCGAT | 1 cut(s) | 58 |
| BsuRI | GGCC | 3 cut(s) | 996, 2095, 2938 |
| BsuTUI | ATCGAT | 1 cut(s) | 58 |
| BtgI | CCRYGG | 2 cut(s) | 91, 916 |
| BtsCI | GGATG | 9 cut(s) | 262, 442, 489, 718, 1072, 2409, 2413, 2588, 2685 |
| BtsI | GCAGTG | 1 cut(s) | 2621 |
| BtsIMutI | CAGTG | 6 cut(s) | 204, 267, 579, 780, 2356, 2621 |
| Cac8I | GCNNGC | 5 cut(s) | 287, 1245, 1362, 2204, 2612 |
| CfoI | GCGC | 4 cut(s) | 285, 320, 1161, 2413 |
| Cfr13I | GGNCC | 2 cut(s) | 1466, 2937 |
| ClaI | ATCGAT | 1 cut(s) | 58 |
| Csp6I | GTAC | 5 cut(s) | 332, 346, 655, 1971, 2624 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2065, 2100 |
| CviQI | GTAC | 5 cut(s) | 332, 346, 655, 1971, 2624 |
| DdeI | CTNAG | 5 cut(s) | 728, 1714, 1871, 2334, 2348 |
| Eam1104I | CTCTTC | 2 cut(s) | 672, 981 |
| EarI | CTCTTC | 2 cut(s) | 672, 981 |
| Ecl136II | GAGCTC | 2 cut(s) | 23, 220 |
| Eco105I | TACGTA | 1 cut(s) | 2366 |
| Eco130I | CCWWGG | 2 cut(s) | 916, 1144 |
| Eco24I | GRGCYC | 3 cut(s) | 25, 222, 916 |
| Eco31I | GGTCTC | 2 cut(s) | 183, 1157 |
| Eco47I | GGWCC | 1 cut(s) | 1466 |
| Eco53kI | GAGCTC | 2 cut(s) | 23, 220 |
| Eco57I | CTGAAG | 6 cut(s) | 140, 291, 603, 1670, 2138, 2562 |
| Eco88I | CYCGRG | 2 cut(s) | 1438, 2573 |
| EcoICRI | GAGCTC | 2 cut(s) | 23, 220 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1466 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 2 cut(s) | 916, 1144 |
| EcoT22I | ATGCAT | 2 cut(s) | 754, 1533 |
| EcoT38I | GRGCYC | 3 cut(s) | 25, 222, 916 |
| ErhI | CCWWGG | 2 cut(s) | 916, 1144 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 792, 824, 883, 915, 1024, 1056 |
| FaqI | GGGAC | 2 cut(s) | 545, 2796 |
| FbaI | TGATCA | 2 cut(s) | 298, 2808 |
| FblI | GTMKAC | 1 cut(s) | 522 |
| Fnu4HI | GCNGC | 8 cut(s) | 140, 240, 281, 316, 1134, 2000, 2207, 2555 |
| FokI | GGATG | 9 cut(s) | 269, 449, 496, 725, 1059, 2416, 2420, 2595, 2692 |
| FriOI | GRGCYC | 3 cut(s) | 25, 222, 916 |
| Fsp4HI | GCNGC | 8 cut(s) | 140, 240, 281, 316, 1134, 2000, 2207, 2555 |
| FspBI | CTAG | 9 cut(s) | 11, 404, 788, 1169, 1361, 1433, 1790, 2021, 2318 |
| FspI | TGCGCA | 1 cut(s) | 1160 |
| GlaI | GCGC | 4 cut(s) | 284, 319, 1160, 2412 |
| GluI | GCNGC | 8 cut(s) | 140, 240, 281, 316, 1134, 2000, 2207, 2555 |
| GsuI | CTGGAG | 3 cut(s) | 39, 930, 1865 |
| HaeIII | GGCC | 3 cut(s) | 996, 2095, 2938 |
| HapII | CCGG | 1 cut(s) | 2872 |
| HhaI | GCGC | 4 cut(s) | 285, 320, 1161, 2413 |
| Hin6I | GCGC | 4 cut(s) | 283, 318, 1159, 2411 |
| HinP1I | GCGC | 4 cut(s) | 283, 318, 1159, 2411 |
| HindIII | AAGCTT | 2 cut(s) | 287, 2264 |
| HpaII | CCGG | 1 cut(s) | 2872 |
| HphI | GGTGA | 4 cut(s) | 1324, 1480, 1516, 1820 |
| Hpy166II | GTNNAC | 5 cut(s) | 95, 523, 655, 2168, 2624 |
| Hpy8I | GTNNAC | 5 cut(s) | 95, 523, 655, 2168, 2624 |
| HpyCH4III | ACNGT | 5 cut(s) | 199, 1399, 1820, 2444, 2805 |
| HpyCH4IV | ACGT | 1 cut(s) | 2365 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 217, 286, 324, 749, 1037, 1754, 1849, 2212 |
| HpyF3I | CTNAG | 5 cut(s) | 728, 1714, 1871, 2334, 2348 |
| HpySE526I | ACGT | 1 cut(s) | 2365 |
| HspAI | GCGC | 4 cut(s) | 283, 318, 1159, 2411 |
| KpnI | GGTACC | 1 cut(s) | 335 |
| Ksp22I | TGATCA | 2 cut(s) | 298, 2808 |
| LmnI | GCTCC | 5 cut(s) | 20, 217, 911, 1681, 1857 |
| Lsp1109I | GCAGC | 6 cut(s) | 126, 226, 327, 1145, 2011, 2193 |
| LweI | GCATC | 9 cut(s) | 157, 474, 565, 652, 761, 968, 1045, 1735, 2398 |
| MaeI | CTAG | 9 cut(s) | 11, 404, 788, 1169, 1361, 1433, 1790, 2021, 2318 |
| MaeII | ACGT | 1 cut(s) | 2365 |
| MaeIII | GTNAC | 5 cut(s) | 466, 934, 1232, 2366, 2585 |
| MfeI | CAATTG | 2 cut(s) | 2417, 2763 |
| MflI | RGATCY | 5 cut(s) | 790, 883, 905, 1078, 2102 |
| MhlI | GDGCHC | 4 cut(s) | 25, 222, 916, 1904 |
| MluI | ACGCGT | 1 cut(s) | 941 |
| MlyI | GAGTC | 3 cut(s) | 1487, 1523, 2625 |
| MmeI | TCCRAC | 6 cut(s) | 108, 1004, 1390, 1566, 1879, 2856 |
| Mph1103I | ATGCAT | 2 cut(s) | 754, 1533 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1347, 2535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2663 |
| MspA1I | CMGCKG | 1 cut(s) | 953 |
| MspCI | CTTAAG | 2 cut(s) | 809, 1283 |
| MspI | CCGG | 1 cut(s) | 2872 |
| MspR9I | CCNGG | 2 cut(s) | 329, 2872 |
| MunI | CAATTG | 2 cut(s) | 2417, 2763 |
| Mva1269I | GAATGC | 1 cut(s) | 2478 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| MvnI | CGCG | 1 cut(s) | 943 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 217, 286, 324, 749, 1037, 1754, 1849, 2212 |
| NciI | CCSGG | 1 cut(s) | 2872 |
| NcoI | CCATGG | 1 cut(s) | 916 |
| NheI | GCTAGC | 1 cut(s) | 1360 |
| NlaIV | GGNNCC | 3 cut(s) | 333, 913, 1467 |
| NmeAIII | GCCGAG | 1 cut(s) | 196 |
| NmuCI | GTSAC | 1 cut(s) | 934 |
| NsbI | TGCGCA | 1 cut(s) | 1160 |
| NsiI | ATGCAT | 2 cut(s) | 754, 1533 |
| NspI | RCATGY | 3 cut(s) | 324, 1040, 1977 |
| PaeR7I | CTCGAG | 2 cut(s) | 1438, 2573 |
| PciI | ACATGT | 1 cut(s) | 1973 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 531 |
| PctI | GAATGC | 1 cut(s) | 2478 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1347, 2535 |
| PfeI | GAWTC | 9 cut(s) | 400, 512, 928, 1889, 1965, 2194, 2321, 2687, 2752 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1994 |
| PkrI | GCNGC | 8 cut(s) | 141, 241, 282, 317, 1135, 2001, 2208, 2556 |
| PleI | GAGTC | 3 cut(s) | 1486, 1522, 2625 |
| PpsI | GAGTC | 3 cut(s) | 1486, 1522, 2625 |
| Ppu21I | YACGTR | 1 cut(s) | 2366 |
| PpuMI | RGGWCCY | 1 cut(s) | 1466 |
| PscI | ACATGT | 1 cut(s) | 1973 |
| PsiI | TTATAA | 4 cut(s) | 425, 1326, 1541, 1958 |
| Psp124BI | GAGCTC | 2 cut(s) | 25, 222 |
| Psp5II | RGGWCCY | 1 cut(s) | 1466 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 3 cut(s) | 333, 913, 1467 |
| PspPI | GGNCC | 2 cut(s) | 1466, 2937 |
| PspPPI | RGGWCCY | 1 cut(s) | 1466 |
| PspXI | VCTCGAGB | 1 cut(s) | 2573 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1963, 1995 |
| PstI | CTGCAG | 1 cut(s) | 244 |
| PsuI | RGATCY | 5 cut(s) | 790, 883, 905, 1078, 2102 |
| PvuII | CAGCTG | 1 cut(s) | 953 |
| RsaI | GTAC | 5 cut(s) | 333, 347, 656, 1972, 2625 |
| RsaNI | GTAC | 5 cut(s) | 332, 346, 655, 1971, 2624 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2663 |
| SacI | GAGCTC | 2 cut(s) | 25, 222 |
| SatI | GCNGC | 8 cut(s) | 140, 240, 281, 316, 1134, 2000, 2207, 2555 |
| Sau96I | GGNCC | 2 cut(s) | 1466, 2937 |
| SchI | GAGTC | 3 cut(s) | 1487, 1523, 2625 |
| ScrFI | CCNGG | 2 cut(s) | 329, 2872 |
| SduI | GDGCHC | 4 cut(s) | 25, 222, 916, 1904 |
| SfaNI | GCATC | 9 cut(s) | 157, 474, 565, 652, 761, 968, 1045, 1735, 2398 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| Sfr274I | CTCGAG | 2 cut(s) | 1438, 2573 |
| SinI | GGWCC | 1 cut(s) | 1466 |
| SlaI | CTCGAG | 2 cut(s) | 1438, 2573 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2663 |
| SnaBI | TACGTA | 1 cut(s) | 2366 |
| SpeI | ACTAGT | 1 cut(s) | 1789 |
| SsiI | CCGC | 3 cut(s) | 280, 2070, 2555 |
| SspI | AATATT | 1 cut(s) | 1908 |
| SspMI | CTAG | 9 cut(s) | 11, 404, 788, 1169, 1361, 1433, 1790, 2021, 2318 |
| SstI | GAGCTC | 2 cut(s) | 25, 222 |
| StyD4I | CCNGG | 2 cut(s) | 327, 2870 |
| StyI | CCWWGG | 2 cut(s) | 916, 1144 |
| TaaI | ACNGT | 5 cut(s) | 199, 1399, 1820, 2444, 2805 |
| TaiI | ACGT | 1 cut(s) | 2368 |
| TaqI | TCGA | 4 cut(s) | 58, 1307, 1439, 2574 |
| TaqII | GACCGA | 2 cut(s) | 2276, 2445 |
| TatI | WGTACW | 4 cut(s) | 345, 654, 1970, 2623 |
| TauI | GCSGC | 2 cut(s) | 283, 2557 |
| TfiI | GAWTC | 9 cut(s) | 400, 512, 928, 1889, 1965, 2194, 2321, 2687, 2752 |
| TscAI | CASTG | 6 cut(s) | 204, 274, 586, 787, 2356, 2621 |
| TseFI | GTSAC | 1 cut(s) | 934 |
| TseI | GCWGC | 6 cut(s) | 139, 239, 315, 1133, 1999, 2206 |
| Tsp45I | GTSAC | 1 cut(s) | 934 |
| TspDTI | ATGAA | 6 cut(s) | 879, 1664, 2055, 2298, 2412, 2679 |
| TspGWI | ACGGA | 3 cut(s) | 80, 540, 2484 |
| TspRI | CASTG | 6 cut(s) | 204, 274, 586, 787, 2356, 2621 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1994 |
| Vha464I | CTTAAG | 2 cut(s) | 809, 1283 |
| VpaK11BI | GGWCC | 1 cut(s) | 1466 |
| XapI | RAATTY | 7 cut(s) | 365, 416, 833, 1690, 1942, 2184, 2450 |
| XbaI | TCTAGA | 1 cut(s) | 403 |
| XceI | RCATGY | 3 cut(s) | 324, 1040, 1977 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1342 |
| XhoI | CTCGAG | 2 cut(s) | 1438, 2573 |
| XmiI | GTMKAC | 1 cut(s) | 522 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1347, 2535 |
| XspI | CTAG | 9 cut(s) | 11, 404, 788, 1169, 1361, 1433, 1790, 2021, 2318 |
| Zsp2I | ATGCAT | 2 cut(s) | 754, 1533 |