FvH4_3g22800

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000179
Physical Location & Seq
Forward (+)
15828963 .. 15829795
833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22800.t1

Sequence Viewer

Length: 699 bp
ATGGCATTTTTCAAGAATTTCAAGAAGGGCACAATCACTATCCTTGAAGACGCCAACAACGTTCAAAGTGATGGCACGACCTTATATACCTATTCTTCACTGACTGGGCCGCACGCCATCGAGACACCCTCCTACGACGGTTTAGACACACTTCTCAACGACCGCATGTTTAATGGTTCAGTGCAATGGAGCGGGTTTCGTGCCAACGAAGCCTTCTCCTACACGGAACGTTACTGGAAATGGTTAGAAGACATCTTAAGCCGAAATAGAGATATCATCCATAAAACTGGCCTCTACCGAACGGTGTTTGCATCGCTCTTCAGCTATGACCGTGTCGCGCCTGTGGTACGGGCCTTCTGTGAGTATTGGTGCCCTAACACGAATACTCTTCACACATCATGTGGCAAAATGTCCATTTCTTTGAGGGACTTGACATATATTTGTGGCTTGCCCATCACTGGAAGGTTTTACGACGAAGTTGTTCCGCCTATCGAAGAATTTTTAGCCAAGGGTAAAGGAGGTGAGCCAGTCATTCCCAAGAGTTACAGGTTTTTATTTCTCGCATACCATAAGCTTTGCAAGGACGATAAAGGGCAAAAGGTGAAGATTGCGTCATGGATCCAGTACTGGTACAAAGGAAGCATGAGATACAAGAGGCCACCTACCAAGAGTGTATGGAACAAGAAAGATGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

233

Amino Acids

26.85

Weight (kDa)

9.22

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 97 - 155 6.2e-10 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 1 cut(s) 338
AciI CCGC 4 cut(s) 110, 163, 192, 485
AclI AACGTT 2 cut(s) 60, 229
AclWI GGATC 2 cut(s) 613, 626
AcsI RAATTY 2 cut(s) 16, 497
AcuI CTGAAG 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 3 cut(s) 348, 626, 632
AfiI CCNNNNNNNGG 1 cut(s) 458
AflII CTTAAG 1 cut(s) 256
AgsI TTSAA 4 cut(s) 13, 22, 47, 65
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 324, 574
AluI AGCT 2 cut(s) 324, 574
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 613, 626
AoxI GGCC 4 cut(s) 107, 289, 351, 656
ApoI RAATTY 2 cut(s) 16, 497
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 107, 351
AsuHPI GGTGA 2 cut(s) 533, 613
BaeGI GKGCMC 2 cut(s) 32, 374
BamHI GGATCC 1 cut(s) 618
BanI GGYRCC 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 54, 255
BccI CCATC 3 cut(s) 65, 125, 461
BcoDI GTCTC 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 107, 351
BmiI GGNNCC 2 cut(s) 371, 620
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 320, 679
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 54, 255
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 7 cut(s) 109, 239, 292, 463, 527, 622, 632
Bse3DI GCAATG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 7 cut(s) 109, 239, 292, 463, 527, 622, 632
BseSI GKGCMC 2 cut(s) 32, 374
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 4 cut(s) 109, 291, 353, 658
BshNI GGYRCC 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 440
BsnI GGCC 4 cut(s) 109, 291, 353, 658
Bsp1286I GDGCHC 2 cut(s) 32, 374
Bsp143I GATC 1 cut(s) 618
BspACI CCGC 4 cut(s) 110, 163, 192, 485
BspANI GGCC 4 cut(s) 109, 291, 353, 658
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 371, 620
BspPI GGATC 2 cut(s) 613, 626
BspQI GCTCTTC 1 cut(s) 323
BspT107I GGYRCC 1 cut(s) 369
BspTI CTTAAG 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 7 cut(s) 109, 239, 292, 463, 527, 622, 632
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 1 cut(s) 618
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 140, 304, 332
Bst6I CTCTTC 2 cut(s) 323, 393
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 114, 449
BstDEI CTNAG 1 cut(s) 696
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 621
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 618
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 169
BstSLI GKGCMC 2 cut(s) 32, 374
BstUI CGCG 1 cut(s) 338
BstV2I GAAGAC 2 cut(s) 54, 255
BstX2I RGATCY 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 618
BsuRI GGCC 4 cut(s) 109, 291, 353, 658
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 98, 186, 456
Cac8I GCNNGC 2 cut(s) 114, 449
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 107, 351
CseI GACGC 2 cut(s) 59, 600
Csp6I GTAC 3 cut(s) 347, 625, 631
CviAII CATG 4 cut(s) 166, 399, 615, 643
CviQI GTAC 3 cut(s) 347, 625, 631
DdeI CTNAG 1 cut(s) 696
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 323, 393
EarI CTCTTC 2 cut(s) 323, 393
EciI GGCGGA 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 507
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 304
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 4 cut(s) 169, 402, 618, 646
FaqI GGGAC 1 cut(s) 440
FatI CATG 4 cut(s) 165, 398, 614, 642
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 110
GlaI GCGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 4 cut(s) 109, 291, 353, 658
HgaI GACGC 2 cut(s) 59, 600
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 169, 402, 618, 646
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 572
HphI GGTGA 2 cut(s) 533, 613
Hpy188III TCNNGA 3 cut(s) 13, 22, 121
Hpy99I CGWCG 2 cut(s) 140, 476
HpyAV CCTTC 4 cut(s) 19, 223, 364, 456
HpyCH4III ACNGT 3 cut(s) 140, 304, 332
HpyCH4IV ACGT 2 cut(s) 60, 229
HpyCH4V TGCA 4 cut(s) 184, 311, 579, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 2 cut(s) 60, 229
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 169, 402, 618, 646
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 1 cut(s) 618
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 9 cut(s) 90, 220, 273, 354, 444, 532, 540, 613, 635
LweI GCATC 2 cut(s) 320, 679
MaeII ACGT 2 cut(s) 60, 229
MaeIII GTNAC 2 cut(s) 230, 542
MalI GATC 1 cut(s) 620
MbiI CCGCTC 1 cut(s) 192
MboI GATC 1 cut(s) 618
MboII GAAGA 7 cut(s) 59, 87, 260, 310, 380, 506, 616
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 2 cut(s) 32, 374
MluCI AATT 2 cut(s) 16, 497
MnlI CCTC 5 cut(s) 139, 302, 417, 512, 648
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 2 cut(s) 171, 257
MspCI CTTAAG 1 cut(s) 256
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 618
NlaIII CATG 4 cut(s) 169, 402, 618, 646
NlaIV GGNNCC 2 cut(s) 371, 620
NspI RCATGY 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 480
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 111
Psp1406I AACGTT 2 cut(s) 60, 229
PspN4I GGNNCC 2 cut(s) 371, 620
PspPI GGNCC 2 cut(s) 107, 351
PsuI RGATCY 1 cut(s) 618
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 3 cut(s) 348, 626, 632
RsaNI GTAC 3 cut(s) 347, 625, 631
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 171, 257
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 2 cut(s) 107, 351
ScaI AGTACT 1 cut(s) 626
SduI GDGCHC 2 cut(s) 32, 374
SfaNI GCATC 2 cut(s) 320, 679
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 16, 497
SsiI CCGC 4 cut(s) 110, 163, 192, 485
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 140, 304, 332
TaiI ACGT 2 cut(s) 63, 232
TaqI TCGA 2 cut(s) 120, 492
TasI AATT 2 cut(s) 16, 497
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 171, 257
Tru9I TTAA 2 cut(s) 171, 257
TscAI CASTG 3 cut(s) 105, 186, 463
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 3 cut(s) 105, 186, 463
Tth111I GACNNNGTC 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 256
XapI RAATTY 2 cut(s) 16, 497
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 480
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.