Rmu_sc0007705.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007705.1
OG0000179
Physical Location & Seq
Forward (+)
35 .. 1017
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007705.1_g000001.1.cds

Sequence Viewer

Length: 876 bp
atgggtgtattttccagggtattttcagagagcagagtgattatcaatcgcagtaacatctcccatttagacttgatatatcttatcagccttcgatccgagtacctttctctaaggcaggataaccgacgagtcgttcagccatacagtccacatcggtttagtcgacagtttggttatgtccaagacattcctggcagccttaagaatgacattcgcaccggcgtactggctcagatttatttgcattgggattcttgcactagaatggacactaactgtgaggtaacgttgccgatccagagtgctatcacggagtatatggttacccgagactatgttgattggtggtctaaagtgtatcattctacaccagtgaagacaacgagagtagcacctactagtagaaccctgcacaagcctctgaaagcaaaagaagacaaggacgtcaaccgcgctgcgcctcgtcgccagaatgtgattgcttgtgaagtcgaatatagcaccaacgtccctgcgcttcctgatagggcttcgctcccagataaggatcgtcaggctcatccagtcgacattctagaagatgatggagactctttagattctcacgtcgctttcatccgtccacttaagctgaaaaaacctgtcatcaaagaaagaaggcgtagtggaagcagcggtagcaatgatagtgaagtgcactttaagcgtcgaaaaactgacaccagccttggccctacttattgtgatcccaatgctgagttcactctgaatactgactttcttggtgacatctcaacttcttcgcaaccgatgctgcagcgaaatgagagattgatggtcgttcactttggggaaacgatgacgcctctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

291

Amino Acids

33.37

Weight (kDa)

8.97

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AatII GACGTC 1 cut(s) 450
AccI GTMKAC 2 cut(s) 166, 570
AccII CGCG 1 cut(s) 456
AciI CCGC 2 cut(s) 454, 678
AclI AACGTT 1 cut(s) 290
AclWI GGATC 4 cut(s) 90, 292, 558, 743
AcyI GRCGYC 2 cut(s) 447, 866
AfaI GTAC 2 cut(s) 104, 228
AfiI CCNNNNNNNGG 1 cut(s) 547
AflII CTTAAG 2 cut(s) 203, 629
AhlI ACTAGT 1 cut(s) 401
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 2 cut(s) 14, 193
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 1 cut(s) 634
AluI AGCT 1 cut(s) 634
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 327, 585
Alw44I GTGCAC 1 cut(s) 698
AlwI GGATC 4 cut(s) 90, 292, 558, 743
Ama87I CYCGRG 1 cut(s) 330
AoxI GGCC 1 cut(s) 733
ApaLI GTGCAC 1 cut(s) 698
ApeKI GCWGC 5 cut(s) 198, 458, 675, 817, 820
AspLEI GCGC 3 cut(s) 458, 463, 520
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 800
AvaI CYCGRG 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 386, 444
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 5 cut(s) 210, 445, 687, 804, 832
BccI CCATC 2 cut(s) 581, 832
BciT130I CCWGG 2 cut(s) 16, 195
BcoDI GTCTC 2 cut(s) 327, 585
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 264, 402, 578
BfmI CTRYAG 1 cut(s) 818
BfrI CTTAAG 2 cut(s) 203, 629
BisI GCNGC 5 cut(s) 199, 459, 676, 818, 821
BlsI GCNGC 5 cut(s) 200, 460, 677, 819, 822
Bme1390I CCNGG 2 cut(s) 16, 195
BmeT110I CYCGRG 1 cut(s) 330
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 1 cut(s) 734
BmrFI CCNGG 2 cut(s) 16, 195
BmsI GCATC 1 cut(s) 804
BpiI GAAGAC 2 cut(s) 386, 444
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 2 cut(s) 447, 866
BsaJI CCNNGG 2 cut(s) 15, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 3 cut(s) 234, 374, 566
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 2 cut(s) 16, 195
BseDI CCNNGG 2 cut(s) 15, 730
BseGI GGATG 2 cut(s) 562, 618
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 248, 750
BseNI ACTGG 3 cut(s) 234, 374, 566
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 5 cut(s) 210, 445, 687, 804, 832
BsgI GTGCAG 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 2 cut(s) 327, 585
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 1 cut(s) 735
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 4 cut(s) 95, 297, 550, 748
BspACI CCGC 2 cut(s) 454, 678
BspANI GGCC 1 cut(s) 735
BspCNI CTCAG 2 cut(s) 247, 751
BspFNI CGCG 1 cut(s) 456
BspMAI CTGCAG 1 cut(s) 822
BspPI GGATC 4 cut(s) 90, 292, 558, 743
BspTI CTTAAG 2 cut(s) 203, 629
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 3 cut(s) 234, 374, 566
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 15, 730
BssMI GATC 4 cut(s) 95, 297, 550, 748
BssNI GRCGYC 2 cut(s) 447, 866
BssT1I CCWWGG 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 16, 195
Bst4CI ACNGT 3 cut(s) 149, 171, 281
BstACI GRCGYC 2 cut(s) 447, 866
BstAFI CTTAAG 2 cut(s) 203, 629
BstAPI GCANNNNNTGC 1 cut(s) 814
BstDEI CTNAG 3 cut(s) 113, 234, 759
BstEII GGTNACC 1 cut(s) 325
BstF5I GGATG 2 cut(s) 562, 618
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 3 cut(s) 458, 463, 520
BstKTI GATC 4 cut(s) 98, 300, 553, 751
BstMAI GTCTC 2 cut(s) 327, 585
BstMBI GATC 4 cut(s) 95, 297, 550, 748
BstMWI GCNNNNNNNGC 3 cut(s) 681, 706, 814
BstNI CCWGG 2 cut(s) 16, 195
BstPI GGTNACC 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 14, 193
BstSFI CTRYAG 1 cut(s) 818
BstSLI GKGCMC 1 cut(s) 702
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 5 cut(s) 210, 445, 687, 804, 832
BstV2I GAAGAC 2 cut(s) 386, 444
BsuRI GGCC 1 cut(s) 735
BtrI CACGTC 1 cut(s) 610
BtsCI GGATG 2 cut(s) 562, 618
BtsIMutI CAGTG 1 cut(s) 381
CfoI GCGC 3 cut(s) 458, 463, 520
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 734
CseI GACGC 1 cut(s) 698
Csp6I GTAC 2 cut(s) 103, 227
CviQI GTAC 2 cut(s) 103, 227
DdeI CTNAG 3 cut(s) 113, 234, 759
DpnI GATC 4 cut(s) 97, 299, 552, 750
DpnII GATC 4 cut(s) 95, 297, 550, 748
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 730
Eco88I CYCGRG 1 cut(s) 330
Eco91I GGTNACC 1 cut(s) 325
EcoO65I GGTNACC 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 14, 193
EcoT14I CCWWGG 1 cut(s) 730
ErhI CCWWGG 1 cut(s) 730
FaiI YATR 7 cut(s) 79, 145, 180, 321, 323, 339, 501
FaqI GGGAC 1 cut(s) 497
FblI GTMKAC 2 cut(s) 166, 570
Fnu4HI GCNGC 5 cut(s) 199, 459, 676, 818, 821
FokI GGATG 2 cut(s) 549, 605
Fsp4HI GCNGC 5 cut(s) 199, 459, 676, 818, 821
FspBI CTAG 3 cut(s) 264, 402, 578
GlaI GCGC 3 cut(s) 457, 462, 519
GluI GCNGC 5 cut(s) 199, 459, 676, 818, 821
HaeIII GGCC 1 cut(s) 735
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 698
HhaI GCGC 3 cut(s) 458, 463, 520
Hin1I GRCGYC 2 cut(s) 447, 866
Hin6I GCGC 3 cut(s) 456, 461, 518
HinP1I GCGC 3 cut(s) 456, 461, 518
HincII GTYRAC 3 cut(s) 167, 451, 571
HindII GTYRAC 3 cut(s) 167, 451, 571
HinfI GANTC 4 cut(s) 132, 254, 593, 602
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 8 cut(s) 152, 167, 451, 571, 626, 700, 765, 847
Hpy188I TCNGA 5 cut(s) 28, 100, 237, 426, 771
Hpy188III TCNNGA 3 cut(s) 301, 524, 578
Hpy8I GTNNAC 8 cut(s) 152, 167, 451, 571, 626, 700, 765, 847
Hpy99I CGWCG 4 cut(s) 132, 471, 614, 714
HpyAV CCTTC 2 cut(s) 101, 654
HpyCH4III ACNGT 3 cut(s) 149, 171, 281
HpyCH4IV ACGT 4 cut(s) 290, 447, 510, 609
HpyCH4V TGCA 5 cut(s) 247, 261, 415, 700, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 681, 706, 814
HpyF3I CTNAG 3 cut(s) 113, 234, 759
HpySE526I ACGT 4 cut(s) 290, 447, 510, 609
Hsp92I GRCGYC 2 cut(s) 447, 866
HspAI GCGC 3 cut(s) 456, 461, 518
Kzo9I GATC 4 cut(s) 95, 297, 550, 748
LmnI GCTCC 1 cut(s) 543
Lsp1109I GCAGC 5 cut(s) 210, 445, 687, 804, 832
LweI GCATC 1 cut(s) 804
MaeI CTAG 3 cut(s) 264, 402, 578
MaeII ACGT 4 cut(s) 290, 447, 510, 609
MaeIII GTNAC 4 cut(s) 53, 286, 325, 788
MalI GATC 4 cut(s) 97, 299, 552, 750
MboI GATC 4 cut(s) 95, 297, 550, 748
MboII GAAGA 4 cut(s) 391, 449, 593, 795
MhlI GDGCHC 1 cut(s) 702
MlyI GAGTC 2 cut(s) 141, 587
MnlI CCTC 3 cut(s) 277, 432, 474
MseI TTAA 3 cut(s) 204, 630, 705
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 678
MspCI CTTAAG 2 cut(s) 203, 629
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 2 cut(s) 16, 195
MteI GCGCNGCGC 1 cut(s) 459
MvaI CCWGG 2 cut(s) 16, 195
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 3 cut(s) 681, 706, 814
NdeII GATC 4 cut(s) 95, 297, 550, 748
NmuCI GTSAC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 2 cut(s) 254, 602
PkrI GCNGC 5 cut(s) 200, 460, 677, 819, 822
PleI GAGTC 2 cut(s) 140, 587
PpsI GAGTC 2 cut(s) 140, 587
Psp1406I AACGTT 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 14, 193
PspEI GGTNACC 1 cut(s) 325
PspGI CCWGG 2 cut(s) 14, 193
PspPI GGNCC 1 cut(s) 734
PstI CTGCAG 1 cut(s) 822
RsaI GTAC 2 cut(s) 104, 228
RsaNI GTAC 2 cut(s) 103, 227
RseI CAYNNNNRTG 1 cut(s) 266
SalI GTCGAC 2 cut(s) 165, 569
SaqAI TTAA 3 cut(s) 204, 630, 705
SatI GCNGC 5 cut(s) 199, 459, 676, 818, 821
Sau3AI GATC 4 cut(s) 95, 297, 550, 748
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 2 cut(s) 141, 587
ScrFI CCNGG 2 cut(s) 16, 195
SduI GDGCHC 1 cut(s) 702
SetI ASST 9 cut(s) 108, 288, 293, 400, 450, 513, 612, 636, 646
SfaNI GCATC 1 cut(s) 804
SfcI CTRYAG 1 cut(s) 818
SgrAI CRCCGGYG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 203, 629
SmoI CTYRAG 2 cut(s) 203, 629
SpeI ACTAGT 1 cut(s) 401
SsiI CCGC 2 cut(s) 454, 678
SspMI CTAG 3 cut(s) 264, 402, 578
StyD4I CCNGG 2 cut(s) 14, 193
StyI CCWWGG 1 cut(s) 730
TaaI ACNGT 3 cut(s) 149, 171, 281
TaiI ACGT 4 cut(s) 293, 450, 513, 612
TaqI TCGA 5 cut(s) 94, 166, 495, 570, 712
TfiI GAWTC 2 cut(s) 254, 602
Tru1I TTAA 3 cut(s) 204, 630, 705
Tru9I TTAA 3 cut(s) 204, 630, 705
TscAI CASTG 1 cut(s) 381
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 5 cut(s) 198, 458, 675, 817, 820
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 1 cut(s) 607
TspGWI ACGGA 2 cut(s) 329, 611
TspRI CASTG 1 cut(s) 381
Vha464I CTTAAG 2 cut(s) 203, 629
VneI GTGCAC 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 166, 570
XspI CTAG 3 cut(s) 264, 402, 578
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.