Rmu_sc0017702.1_g000002

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017702.1
OG0000179
Physical Location & Seq
Forward (+)
16388 .. 16654
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017702.1_g000002.1.cds

Sequence Viewer

Length: 267 bp
atggctttcttcaagtgcttcaagaaaggaacaatcaccatcctcgacgatccggaggacactcagagtgatggcactactctacaggtgtatccatcgttgactgggcctcaagcaatcgatgtccctccttatgacccttctgctcacatccttcagtggactcatgtggtacctcgccagctggctatgttccgacaaccgagatctggcagagaccaacaaaactcgcacgtgctgttgcttaagtcttcgcatcatgatcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

89

Amino Acids

10.09

Weight (kDa)

6.48

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 52
AclWI GGATC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 140
AcvI CACGTG 1 cut(s) 235
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 209
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 13, 22
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 74, 107
BanI GGYRCC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 243
BccI CCATC 3 cut(s) 47, 65, 103
BciVI GTATCC 1 cut(s) 102
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 245
BfuI GTATCC 1 cut(s) 102
BglII AGATCT 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 120
BseGI GGATG 2 cut(s) 39, 150
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 3 cut(s) 49, 206, 262
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 52
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 172
BspTI CTTAAG 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 210
BsrI ACTGG 1 cut(s) 109
BssMI GATC 3 cut(s) 49, 206, 262
BstAFI CTTAAG 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 182, 186
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 39, 150
BstKTI GATC 3 cut(s) 52, 209, 265
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 3 cut(s) 49, 206, 262
BstSFI CTRYAG 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 109
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 2 cut(s) 39, 150
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 2 cut(s) 182, 186
CciI TCATGA 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 107
ClaI ATCGAT 1 cut(s) 120
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 167, 260
CviJI RGCY 4 cut(s) 5, 109, 184, 188
CviKI_1 RGCY 4 cut(s) 5, 109, 184, 188
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 51, 208, 264
DpnII GATC 3 cut(s) 49, 206, 262
Eco31I GGTCTC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 140
Eco72I CACGTG 1 cut(s) 235
FaeI CATG 2 cut(s) 170, 263
FaiI YATR 4 cut(s) 135, 168, 191, 261
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 166, 259
FbaI TGATCA 1 cut(s) 262
FokI GGATG 2 cut(s) 26, 137
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 53
Hin1II CATG 2 cut(s) 170, 263
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 102, 162
Hpy188I TCNGA 2 cut(s) 66, 197
Hpy188III TCNNGA 3 cut(s) 22, 53, 260
Hpy8I GTNNAC 2 cut(s) 102, 162
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 150, 164
HpyCH4IV ACGT 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 2 cut(s) 170, 263
Kpn2I TCCGGA 1 cut(s) 52
KpnI GGTACC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 49, 206, 262
LpnPI CCDG 6 cut(s) 66, 71, 90, 170, 194, 195
MaeII ACGT 1 cut(s) 234
MalI GATC 3 cut(s) 51, 208, 264
MboI GATC 3 cut(s) 49, 206, 262
MboII GAAGA 1 cut(s) 243
MflI RGATCY 1 cut(s) 206
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 5 cut(s) 49, 53, 120, 138, 186
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 184
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 1 cut(s) 53
NdeII GATC 3 cut(s) 49, 206, 262
NlaIII CATG 2 cut(s) 170, 263
NlaIV GGNNCC 1 cut(s) 174
PagI TCATGA 1 cut(s) 259
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 235
PspCI CACGTG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 246
Sau3AI GATC 3 cut(s) 49, 206, 262
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 157
SetI ASST 4 cut(s) 90, 178, 186, 237
SfcI CTRYAG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 111, 245
SmoI CTYRAG 2 cut(s) 111, 245
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 45, 120
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 164
TspRI CASTG 1 cut(s) 164
Vha464I CTTAAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.