Rroxscaffold_6G00423130

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000179
Physical Location & Seq
Forward (+)
44075935 .. 44078312
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423130.1

Sequence Viewer

Length: 1275 bp
ATGGCAAGCTTACCGGGAGAGGCCTCTGTCGAGCTATATTCGCCTCCTTTGTTCGGCTATGACCGTGTTGCACTGTCATACGGGCCTTCGCGAGTGCGGTGTCCCGCGACGAATACCCTCCACACTTCAGCGGGGAAATGTCTATCTCCCTGCGGGATTTGGACAAACTTGGAGGTTTACCCATTGCGGGACGATTCTATGATGAGGTTGTCCCGGTGGCGAAGAGCTTTCTACAACGAGCAAGGGAGTCAACGTAGCTGCCGTTATTTGTTTCTCGCCTACCATAAGCTCGCAAAGAAAGCCAAGGGCGAGAAGGTGAAAATAACTTCCGGATACGATATTGGTATAGAGGAGCTTTGCGCTATAAGAGGCCTCCAAACAAAAGCACCGGGAACAAAAGAGATCCGCCCCGAATACAACACCGGCTTGATTCGTCCGGGAGTATTCAAAGTCGCCGACAAAATGTCACGGGGTGTACGATTTTGCCTAGCGCGAGTACTTCGGCACCACTTTCGGTCTCCACTTCCCAACGACCTAAGGCCCCGTATGGTTCGCTTCTCCGGAGAACTTTCGGCTAGGCATTTTGGAGACTCACGAGCTCTTTCTTTGTTCGACACATGTGATAATGTGAAGATGGGTGTATTTGCCGGGTTGAATGTAGCACCAAGGTCCCCGTGCTTCCCGATAGGGCTTCGCTCCCGGATAAGGACCGTCGAGGCTCATCCGATCGACATTCTAGAAGATGATGGAGACTCTTTAGATTCTCACGTAGCTTTGGTCGGTCCACCTAAGCCGAAAAGACCGACGATCCAAGAAAGAAGGCGTAGTGGGAGTAGCGGTAGCAATAATAGTGAAGTACACTTTAAGCGTCGGAAAAGCGACACCGGCCTTGGCCTTACTTATTGCGATCCCAATGCGAAGATTGATGGACATCCACTTTGGGGAAACGATGACACCTCTTCGGACCCTATACGTGTTCCTTGCGGCGAGAACTTGAGGCTTACTCTTTATCCGCGAAAGGAACATCCAATGCGAGGAATGACCCACGGCAAGTTGACCCTACATGTACAATTCTTGACTCTTGTCTCTGTTATAGATGCTAGTCAAAGACTTCGTGATATCCGTCAACAAGCTGCTACGCAGGCGAGCTTAGCTTTGTATGGGATTGATCCTTCATCTATAAAGGGGAAAGTTGAGGGATTGTTGACCAGTGCTGACCAATACAATTTGGCACGGCTTGCTTGTTCACGCAAGGCTACTCCGAGGCACACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

424

Amino Acids

47.24

Weight (kDa)

9.79

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 504
AccII CGCG 4 cut(s) 91, 107, 493, 1015
AccIII TCCGGA 2 cut(s) 329, 560
AciI CCGC 9 cut(s) 97, 105, 131, 153, 187, 406, 837, 984, 1013
AclWI GGATC 4 cut(s) 397, 802, 902, 1163
AcuI CTGAAG 1 cut(s) 111
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 4 cut(s) 477, 498, 858, 1068
AfiI CCNNNNNNNGG 5 cut(s) 53, 187, 705, 941, 1034
AflIII ACRYGT 4 cut(s) 617, 973, 1063, 1269
AgsI TTSAA 2 cut(s) 448, 655
AhdI GACNNNNNGTC 1 cut(s) 463
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 4 cut(s) 522, 582, 744, 1090
AlwI GGATC 4 cut(s) 397, 802, 902, 1163
Aor13HI TCCGGA 2 cut(s) 329, 560
AoxI GGCC 6 cut(s) 21, 83, 370, 539, 886, 892
ApeKI GCWGC 2 cut(s) 258, 1133
ArsI GACNNNNNNTTYG 2 cut(s) 921, 953
AspLEI GCGC 2 cut(s) 362, 493
AspS9I GGNCC 6 cut(s) 83, 540, 669, 708, 782, 964
AsuC2I CCSGG 6 cut(s) 15, 214, 390, 438, 649, 700
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 4 cut(s) 669, 708, 782, 964
AxyI CCTNAGG 1 cut(s) 536
BanI GGYRCC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 601
BauI CACGAG 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 2 cut(s) 245, 1120
BccI CCATC 3 cut(s) 628, 740, 920
BceAI ACGGC 3 cut(s) 246, 1063, 1250
BcgI CGANNNNNNTGC 4 cut(s) 494, 528, 896, 930
BciVI GTATCC 1 cut(s) 326
BcnI CCSGG 6 cut(s) 15, 214, 390, 438, 649, 700
BcoDI GTCTC 4 cut(s) 522, 582, 744, 1090
BfaI CTAG 4 cut(s) 488, 576, 737, 1101
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 3 cut(s) 259, 985, 1134
BlpI GCTNAGC 1 cut(s) 1150
BlsI GCNGC 3 cut(s) 260, 986, 1135
BmcAI AGTACT 1 cut(s) 498
Bme1390I CCNGG 6 cut(s) 15, 214, 390, 438, 649, 700
Bme18I GGWCC 4 cut(s) 669, 708, 782, 964
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 6 cut(s) 83, 540, 669, 708, 782, 964
BmiI GGNNCC 4 cut(s) 506, 542, 671, 966
BmrFI CCNGG 6 cut(s) 15, 214, 390, 438, 649, 700
BmsI GCATC 1 cut(s) 1087
BoxI GACNNNNGTC 1 cut(s) 1082
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
Bpu10I CCTNAGC 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 1150
BpuEI CTTGAG 1 cut(s) 1015
BpuMI CCSGG 6 cut(s) 15, 214, 390, 438, 649, 700
BsaAI YACGTR 3 cut(s) 769, 974, 1272
BsaBI GATNNNNATC 1 cut(s) 930
BsaI GGTCTC 1 cut(s) 522
BsaJI CCNNGG 5 cut(s) 303, 665, 889, 1045, 1262
BsaWI WCCGGW 2 cut(s) 329, 560
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 823, 853
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 187, 705, 941, 1034
Bse118I RCCGGY 2 cut(s) 422, 884
Bse1I ACTGG 1 cut(s) 1209
Bse21I CCTNAGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 930
BseAI TCCGGA 2 cut(s) 329, 560
BseDI CCNNGG 5 cut(s) 303, 665, 889, 1045, 1262
BseGI GGATG 3 cut(s) 721, 931, 1024
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 5 cut(s) 53, 187, 705, 941, 1034
BseMI GCAATG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 1209
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 245, 1120
Bsh1236I CGCG 4 cut(s) 91, 107, 493, 1015
Bsh1285I CGRYCG 1 cut(s) 729
BshFI GGCC 6 cut(s) 23, 85, 372, 541, 888, 894
BshNI GGYRCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 601
BslFI GGGAC 4 cut(s) 87, 196, 203, 655
BslI CCNNNNNNNGG 5 cut(s) 53, 187, 705, 941, 1034
BsmAI GTCTC 4 cut(s) 522, 582, 744, 1090
BsmFI GGGAC 4 cut(s) 87, 196, 203, 655
BsnI GGCC 6 cut(s) 23, 85, 372, 541, 888, 894
Bso31I GGTCTC 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 601
Bsp13I TCCGGA 2 cut(s) 329, 560
Bsp1407I TGTACA 1 cut(s) 1066
Bsp143I GATC 5 cut(s) 402, 726, 807, 907, 1168
Bsp1720I GCTNAGC 1 cut(s) 1150
Bsp68I TCGCGA 1 cut(s) 91
BspACI CCGC 9 cut(s) 97, 105, 131, 153, 187, 406, 837, 984, 1013
BspANI GGCC 6 cut(s) 23, 85, 372, 541, 888, 894
BspEI TCCGGA 2 cut(s) 329, 560
BspFNI CGCG 4 cut(s) 91, 107, 493, 1015
BspLI GGNNCC 4 cut(s) 506, 542, 671, 966
BspPI GGATC 4 cut(s) 397, 802, 902, 1163
BspQI GCTCTTC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 422, 884
BsrGI TGTACA 1 cut(s) 1066
BsrI ACTGG 1 cut(s) 1209
BssAI RCCGGY 2 cut(s) 422, 884
BssECI CCNNGG 5 cut(s) 303, 665, 889, 1045, 1262
BssMI GATC 5 cut(s) 402, 726, 807, 907, 1168
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 3 cut(s) 303, 665, 889
Bst2BI CACGAG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 65, 75, 712
Bst6I CTCTTC 2 cut(s) 217, 964
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstAUI TGTACA 1 cut(s) 1066
BstBAI YACGTR 3 cut(s) 769, 974, 1272
BstC8I GCNNGC 5 cut(s) 7, 291, 1143, 1147, 1239
BstDEI CTNAG 3 cut(s) 536, 789, 1150
BstDSI CCRYGG 1 cut(s) 1045
BstF5I GGATG 3 cut(s) 721, 931, 1024
BstFNI CGCG 4 cut(s) 91, 107, 493, 1015
BstHHI GCGC 2 cut(s) 362, 493
BstKTI GATC 5 cut(s) 405, 729, 810, 910, 1171
BstMAI GTCTC 4 cut(s) 522, 582, 744, 1090
BstMBI GATC 5 cut(s) 402, 726, 807, 907, 1168
BstMCI CGRYCG 1 cut(s) 729
BstMWI GCNNNNNNNGC 6 cut(s) 40, 299, 885, 1142, 1151, 1238
BstNSI RCATGY 2 cut(s) 621, 1067
BstPAI GACNNNNGTC 1 cut(s) 1082
BstSCI CCNGG 6 cut(s) 13, 212, 388, 436, 647, 698
BstUI CGCG 4 cut(s) 91, 107, 493, 1015
BstV1I GCAGC 2 cut(s) 245, 1120
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 536
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 6 cut(s) 23, 85, 372, 541, 888, 894
BtgI CCRYGG 1 cut(s) 1045
BtsCI GGATG 3 cut(s) 721, 931, 1024
BtsIMutI CAGTG 2 cut(s) 71, 1216
BtuMI TCGCGA 1 cut(s) 91
Cac8I GCNNGC 5 cut(s) 7, 291, 1143, 1147, 1239
CfoI GCGC 2 cut(s) 362, 493
Cfr10I RCCGGY 2 cut(s) 422, 884
Cfr13I GGNCC 6 cut(s) 83, 540, 669, 708, 782, 964
CseI GACGC 1 cut(s) 857
Csp6I GTAC 4 cut(s) 476, 497, 857, 1067
CviAII CATG 2 cut(s) 618, 1064
CviQI GTAC 4 cut(s) 476, 497, 857, 1067
DdeI CTNAG 3 cut(s) 536, 789, 1150
DpnI GATC 5 cut(s) 404, 728, 809, 909, 1170
DpnII GATC 5 cut(s) 402, 726, 807, 907, 1168
DraIII CACNNNGTG 1 cut(s) 473
DriI GACNNNNNGTC 1 cut(s) 463
Eam1104I CTCTTC 2 cut(s) 217, 964
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 2 cut(s) 217, 964
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 303, 665, 889
Eco147I AGGCCT 2 cut(s) 23, 372
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 522
Eco32I GATATC 1 cut(s) 1120
Eco47I GGWCC 4 cut(s) 669, 708, 782, 964
Eco53kI GAGCTC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 599
EcoO109I RGGNCCY 2 cut(s) 540, 669
EcoRV GATATC 1 cut(s) 1120
EcoT14I CCWWGG 3 cut(s) 303, 665, 889
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 3 cut(s) 303, 665, 889
FaeI CATG 2 cut(s) 621, 1067
FaqI GGGAC 4 cut(s) 87, 196, 203, 655
FatI CATG 2 cut(s) 617, 1063
FauI CCCGC 4 cut(s) 112, 124, 146, 180
Fnu4HI GCNGC 3 cut(s) 259, 985, 1134
FokI GGATG 3 cut(s) 708, 918, 1011
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 259, 985, 1134
FspBI CTAG 4 cut(s) 488, 576, 737, 1101
GlaI GCGC 2 cut(s) 361, 492
GluI GCNGC 3 cut(s) 259, 985, 1134
HaeIII GGCC 6 cut(s) 23, 85, 372, 541, 888, 894
HgaI GACGC 1 cut(s) 857
HhaI GCGC 2 cut(s) 362, 493
Hin1II CATG 2 cut(s) 621, 1067
Hin6I GCGC 2 cut(s) 360, 491
HinP1I GCGC 2 cut(s) 360, 491
HincII GTYRAC 4 cut(s) 251, 1056, 1127, 1206
HindII GTYRAC 4 cut(s) 251, 1056, 1127, 1206
HindIII AAGCTT 1 cut(s) 7
HinfI GANTC 7 cut(s) 194, 247, 430, 590, 752, 761, 1078
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 9 cut(s) 178, 251, 476, 785, 859, 1056, 1127, 1206, 1247
Hpy188I TCNGA 4 cut(s) 726, 873, 964, 1263
Hpy188III TCNNGA 8 cut(s) 90, 330, 561, 594, 682, 737, 1075, 1115
Hpy8I GTNNAC 9 cut(s) 178, 251, 476, 785, 859, 1056, 1127, 1206, 1247
Hpy99I CGWCG 4 cut(s) 112, 716, 808, 873
HpyAV CCTTC 4 cut(s) 96, 307, 813, 1182
HpyCH4III ACNGT 3 cut(s) 65, 75, 712
HpyCH4IV ACGT 4 cut(s) 253, 768, 973, 1271
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 299, 885, 1142, 1151, 1238
HpyF3I CTNAG 3 cut(s) 536, 789, 1150
HpySE526I ACGT 4 cut(s) 253, 768, 973, 1271
Hsp92II CATG 2 cut(s) 621, 1067
HspAI GCGC 2 cut(s) 360, 491
Kpn2I TCCGGA 2 cut(s) 329, 560
Kzo9I GATC 5 cut(s) 402, 726, 807, 907, 1168
LguI GCTCTTC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 352, 701
Lsp1109I GCAGC 2 cut(s) 245, 1120
LweI GCATC 1 cut(s) 1087
MaeI CTAG 4 cut(s) 488, 576, 737, 1101
MaeII ACGT 4 cut(s) 253, 768, 973, 1271
MaeIII GTNAC 1 cut(s) 465
MalI GATC 5 cut(s) 404, 728, 809, 909, 1170
MboI GATC 5 cut(s) 402, 726, 807, 907, 1168
MboII GAAGA 5 cut(s) 234, 643, 752, 931, 951
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 2 cut(s) 1070, 1225
MlyI GAGTC 4 cut(s) 256, 584, 746, 1072
MmeI TCCRAC 1 cut(s) 851
MroI TCCGGA 2 cut(s) 329, 560
MseI TTAA 1 cut(s) 864
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 6 cut(s) 15, 214, 390, 438, 649, 700
MvnI CGCG 4 cut(s) 91, 107, 493, 1015
MwoI GCNNNNNNNGC 6 cut(s) 40, 299, 885, 1142, 1151, 1238
NciI CCSGG 6 cut(s) 15, 214, 390, 438, 649, 700
NdeII GATC 5 cut(s) 402, 726, 807, 907, 1168
NlaIII CATG 2 cut(s) 621, 1067
NlaIV GGNNCC 4 cut(s) 506, 542, 671, 966
NmuCI GTSAC 1 cut(s) 465
NruI TCGCGA 1 cut(s) 91
NspI RCATGY 2 cut(s) 621, 1067
PceI AGGCCT 2 cut(s) 23, 372
PciI ACATGT 2 cut(s) 617, 1063
PciSI GCTCTTC 1 cut(s) 217
PcsI WCGNNNNNNNCGW 3 cut(s) 259, 475, 1120
PfeI GAWTC 3 cut(s) 194, 430, 761
PfoI TCCNGGA 2 cut(s) 436, 698
PkrI GCNGC 3 cut(s) 260, 986, 1135
Ple19I CGATCG 1 cut(s) 729
PleI GAGTC 4 cut(s) 255, 584, 746, 1072
PpsI GAGTC 4 cut(s) 255, 584, 746, 1072
Ppu21I YACGTR 3 cut(s) 769, 974, 1272
PpuMI RGGWCCY 1 cut(s) 669
PscI ACATGT 2 cut(s) 617, 1063
PshAI GACNNNNGTC 1 cut(s) 1082
Psp124BI GAGCTC 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 669
PspN4I GGNNCC 4 cut(s) 506, 542, 671, 966
PspPI GGNCC 6 cut(s) 83, 540, 669, 708, 782, 964
PspPPI RGGWCCY 1 cut(s) 669
PsuI RGATCY 1 cut(s) 402
PvuI CGATCG 1 cut(s) 729
RruI TCGCGA 1 cut(s) 91
RsaI GTAC 4 cut(s) 477, 498, 858, 1068
RsaNI GTAC 4 cut(s) 476, 497, 857, 1067
SacI GAGCTC 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 3 cut(s) 259, 985, 1134
Sau3AI GATC 5 cut(s) 402, 726, 807, 907, 1168
Sau96I GGNCC 6 cut(s) 83, 540, 669, 708, 782, 964
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 4 cut(s) 256, 584, 746, 1072
ScrFI CCNGG 6 cut(s) 15, 214, 390, 438, 649, 700
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 1087
SinI GGWCC 4 cut(s) 669, 708, 782, 964
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
Sse9I AATT 2 cut(s) 1070, 1225
SseBI AGGCCT 2 cut(s) 23, 372
SsiI CCGC 9 cut(s) 97, 105, 131, 153, 187, 406, 837, 984, 1013
SspMI CTAG 4 cut(s) 488, 576, 737, 1101
SstI GAGCTC 1 cut(s) 601
StuI AGGCCT 2 cut(s) 23, 372
StyD4I CCNGG 6 cut(s) 13, 212, 388, 436, 647, 698
StyI CCWWGG 3 cut(s) 303, 665, 889
TaaI ACNGT 3 cut(s) 65, 75, 712
TaiI ACGT 4 cut(s) 256, 771, 976, 1274
TaqI TCGA 4 cut(s) 30, 612, 714, 729
TaqII GACCGA 3 cut(s) 504, 770, 817
TasI AATT 2 cut(s) 1070, 1225
TatI WGTACW 3 cut(s) 496, 856, 1066
TauI GCSGC 1 cut(s) 987
TfiI GAWTC 3 cut(s) 194, 430, 761
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 2 cut(s) 78, 1216
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 2 cut(s) 258, 1133
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 1 cut(s) 1164
TspGWI ACGGA 1 cut(s) 1112
TspRI CASTG 2 cut(s) 78, 1216
VpaK11BI GGWCC 4 cut(s) 669, 708, 782, 964
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 2 cut(s) 621, 1067
XspI CTAG 4 cut(s) 488, 576, 737, 1101
ZrmI AGTACT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.