pycom1310g00020

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001310
OG0000179
Physical Location & Seq
Reverse (-)
5283 .. 7430
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1310g00020.1

Sequence Viewer

Length: 2148 bp
ATGGTATTTTTCAAATGTTTTAAGAGCAACACCATTACCATTCTTGCGAAGGAAAATGATTCGCAAGATAGGGGAACAACTCTGAAGATTTACGCCCCACTGACTGGCCTTAAGGCGCTTGCTCTTCCTACAAAAGACAACTCCATGCATATTAAGTCGTGGTCTTCTGAAGTATCTTGGAAGGTGGCAAACTTTGTTCGATCAAATACGAAGAGGGAGGCGTGCACACCGGGGATTCTTATCTTGAACCCTTCACACCATGCTCATGACAGTCATCCGGCTTCGTTTAAGCTTCTCGGAGATCACATCCGCAGCGGAGCTATGGCTTGGAATGATGCCTTGTCGACTACCGGAGAAGCTGTTTTTGATGAGTCTTATTGGGAGTGGCTTGAAGATGTCTTGGGCCGATCTAAACATGTGCTTACTAGCATGGGCCTTTACCATGCCGTGTACGCATCTTTGTTTAGTTATGATCTCCATCATTCTGTCCTTCATGCGTTCTTCGAGCATTGGTGTTCAGCGACTAACACGCTTCATACAGCTCAAGGAGAGATGTCAATTTCACTTTGGGATCTCCACAAGATAGGGGGATTGCCAATCCAAGGTAAGTTTTATGACGAGGTCGTTCCTAGTGCGGAGGAACTTTCTCTCTGCAATACCCGAGGATTGCCTGCGAGTTGTCGCTGTTTATTTTGGGCATATCACAAGCTTTTCCAAGATGCTCGAAGTAAATCAGGCGTGAAGATTTCTTCATGGATCCGCTTCTGGTATTGGGAGGACACAAGGTACATGAAGTCCTCGAAGAGAAGAAGTTGCAACAAAACCACTAAGCCAAAGGGAGACTCATATCCATCTGGTGCCATTGGTTCAGCTAGGCGCCGTTCCCCTGCCGAGTTGAGAGCATTTGAGGACCTTGGCATAGCATCAGAGCATGTGGAAGAATCTTACCTAGCTGCTTTCTTAGCTTGTTGGCTTTGTAAGTTTGTTTTTCCAATCGGCGACGTCAACTTTGTTCGTCCTGGGGTTTTCAAAGTTGCTAGCAAGATGGCTGCAGGTGAATCTTTCAGTCTTGCTATCCCGGTTTTGGCCAATATTTATAATGGCTTGAGTGTTGTTTCGAACTCAGCAAACACTGAAGATCGTGCCGCGGTTCTTCCCTACCATTATGTGTATGGTTGGTTGGGTGAGTACTTCGGTACTCATTTTTTTTCTTCAACTCTAAACAAGTCAGGGCCTTTGATGACGAAGCATTCTGGCGTGCTTTCTTCGAAGAGCCTCGATGATTCCCAGGCGCAAGCACTGTTTAGAAGCTGCGAAGGCTTGAAGATGGACTATCTGGCGGGAGTTGGCTCGGTGCGGCGAGGCATCATGGACGATTCGCATCTTCGCTTCTCAGACTTATCTTACCTTGTAAGTCTTCGCTCAGGGTATGTTTCTTTGCGGCAAGAAGATCGATGCATTGTTCAGCCGTATAGTCCCCACCGTTTCAGCAGGCAATTTGGTTTTGTCCAACATGTGCCAGGCAAGCTGAAGGAAAAAAACCAATTAGACTCCTTGCAAGCCGTGTATATGCATTGGGAGTCTTGTACCCGTGCATGTACAAATGCTTCTATCACCCTGCCGGCAAAAGACGAGTTCAAGAGTAGTCCAGTAACCCGTGCTTACATAAGTTGGTGGTCAAAGGTATATTATGAGAATTCGGGGATGGCAAGTGGTACCAATTCTTCTCATTCACACCTCAATGTATTGAAGGAGGGGTGTTCTGTGGTTCCTACACAACTGATATCTTTTGATTGCGCGAGTGCTGCTACTTTGCAAGATAGACCAGTGGTTTTAGTCCCTCAATGCCCACGCTTGTCTTCTCAACATCTGGATGTATCTGAAGAGGCCGGTGATGAAGTTGATTCGCACGAAGATGGACTTGTTTTGCGGCAGGGTCAACAAGTTTTAAACAAGCGACGTCTTGAAGGCGCTCAGGCTGATAGCGATGTCAATTTTCGTCATAAGAAGAAAGAAGTGTTTAGGCTCCCTCAACTCGATGGTAGTGTGTCGTTTGAGAAAGACGTATGCATCTTCTTCTCTCTTATGACTTCTTCTGCTTTCATTGTTCTAGCTTTTGTTTCTAACAGCTTTCTTTGTTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

716

Amino Acids

80.03

Weight (kDa)

8.29

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 145 - 560 9.6e-31 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1098
AarI CACCTGC 1 cut(s) 1043
AatII GACGTC 2 cut(s) 1005, 1963
Acc36I ACCTGC 1 cut(s) 1043
Acc65I GGTACC 1 cut(s) 1715
AccB1I GGYRCC 3 cut(s) 857, 876, 1715
AccB7I CCANNNNNTGG 1 cut(s) 104
AccI GTMKAC 1 cut(s) 344
AccII CGCG 2 cut(s) 1148, 1799
AclWI GGATC 3 cut(s) 579, 751, 764
AcoI YGGCCR 1 cut(s) 1086
AcsI RAATTY 1 cut(s) 1696
AcuI CTGAAG 5 cut(s) 104, 189, 1155, 1550, 1902
AcyI GRCGYC 3 cut(s) 877, 1002, 1960
AfaI GTAC 7 cut(s) 452, 788, 1190, 1198, 1588, 1600, 1717
AfiI CCNNNNNNNGG 3 cut(s) 104, 602, 1084
AflII CTTAAG 1 cut(s) 110
AflIII ACRYGT 2 cut(s) 415, 1513
AgsI TTSAA 9 cut(s) 13, 247, 392, 1030, 1215, 1324, 1639, 1750, 1967
AjnI CCWGG 3 cut(s) 1018, 1287, 1519
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 834
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 3 cut(s) 579, 751, 764
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 6 cut(s) 106, 403, 433, 1086, 1232, 1887
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 312, 953, 1049, 1311, 1805
ApoI RAATTY 1 cut(s) 1696
ArsI GACNNNNNNTTYG 2 cut(s) 992, 1024
Asp718I GGTACC 1 cut(s) 1715
AspLEI GCGC 5 cut(s) 118, 879, 1294, 1799, 1973
AspS9I GGNCC 4 cut(s) 403, 433, 910, 1232
AsuC2I CCSGG 2 cut(s) 231, 1079
AsuHPI GGTGA 4 cut(s) 1067, 1196, 1606, 1904
AsuII TTCGAA 2 cut(s) 1118, 1268
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 1 cut(s) 910
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 1088
BamHI GGATCC 1 cut(s) 756
BanI GGYRCC 3 cut(s) 857, 876, 1715
BarI GAAGNNNNNNTAC 4 cut(s) 1591, 1623, 1708, 1740
BbsI GAAGAC 3 cut(s) 156, 1409, 1851
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 5 cut(s) 324, 940, 1036, 1298, 1792
BccI CCATC 7 cut(s) 486, 859, 1039, 1321, 1699, 1910, 2033
BceAI ACGGC 4 cut(s) 431, 864, 1453, 1547
BcgI CGANNNNNNTGC 2 cut(s) 1433, 1467
BciT130I CCWGG 3 cut(s) 1020, 1289, 1521
BcnI CCSGG 2 cut(s) 231, 1079
BcoDI GTCTC 1 cut(s) 834
BfaI CTAG 6 cut(s) 426, 630, 873, 950, 1038, 2111
BfmI CTRYAG 1 cut(s) 1050
BfoI RGCGCY 3 cut(s) 119, 880, 1974
BfrI CTTAAG 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 1043
BisI GCNGC 9 cut(s) 313, 954, 1050, 1146, 1312, 1358, 1442, 1806, 1931
BlsI GCNGC 9 cut(s) 314, 955, 1051, 1147, 1313, 1359, 1443, 1807, 1932
BmcAI AGTACT 1 cut(s) 1190
Bme1390I CCNGG 5 cut(s) 231, 1020, 1079, 1289, 1521
Bme18I GGWCC 1 cut(s) 910
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 4 cut(s) 403, 433, 910, 1232
BmiI GGNNCC 6 cut(s) 758, 859, 878, 1717, 1770, 2027
BmrFI CCNGG 5 cut(s) 231, 1020, 1079, 1289, 1521
BmsI GCATC 8 cut(s) 325, 464, 709, 932, 1374, 1390, 1445, 2079
BmtI GCTAGC 1 cut(s) 1041
BpiI GAAGAC 3 cut(s) 156, 1409, 1851
Bpu10I CCTNAGC 2 cut(s) 1423, 1974
Bpu14I TTCGAA 2 cut(s) 1118, 1268
BpuEI CTTGAG 2 cut(s) 528, 1126
BpuMI CCSGG 2 cut(s) 231, 1079
Bsa29I ATCGAT 1 cut(s) 1453
BsaBI GATNNNNATC 3 cut(s) 239, 477, 1380
BsaHI GRCGYC 3 cut(s) 877, 1002, 1960
BsaJI CCNNGG 7 cut(s) 230, 601, 661, 913, 1019, 1146, 1287
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 602, 1084
Bse118I RCCGGY 2 cut(s) 1621, 1889
Bse1I ACTGG 3 cut(s) 109, 1649, 1826
Bse8I GATNNNNATC 3 cut(s) 239, 477, 1380
BseBI CCWGG 3 cut(s) 1020, 1289, 1521
BseCI ATCGAT 1 cut(s) 1453
BseDI CCNNGG 7 cut(s) 230, 601, 661, 913, 1019, 1146, 1287
BseGI GGATG 4 cut(s) 274, 306, 1710, 1879
BseJI GATNNNNATC 3 cut(s) 239, 477, 1380
BseLI CCNNNNNNNGG 3 cut(s) 104, 602, 1084
BseMII CTCAG 4 cut(s) 1137, 1407, 1437, 1988
BseNI ACTGG 3 cut(s) 109, 1649, 1826
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 5 cut(s) 324, 940, 1036, 1298, 1792
Bsh1236I CGCG 2 cut(s) 1148, 1799
BshFI GGCC 6 cut(s) 108, 405, 435, 1088, 1234, 1889
BshNI GGYRCC 3 cut(s) 857, 876, 1715
BshVI ATCGAT 1 cut(s) 1453
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 6 cut(s) 230, 278, 351, 1079, 1622, 1890
BslFI GGGAC 2 cut(s) 1461, 1823
BslI CCNNNNNNNGG 3 cut(s) 104, 602, 1084
BsmAI GTCTC 1 cut(s) 834
BsmFI GGGAC 2 cut(s) 1461, 1823
BsmI GAATGC 1 cut(s) 1249
BsnI GGCC 6 cut(s) 108, 405, 435, 1088, 1234, 1889
BsoBI CYCGRG 1 cut(s) 660
Bsp119I TTCGAA 2 cut(s) 1118, 1268
Bsp1286I GDGCHC 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 1598
Bsp143I GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
BspANI GGCC 6 cut(s) 108, 405, 435, 1088, 1234, 1889
BspCNI CTCAG 4 cut(s) 1136, 1406, 1436, 1987
BspDI ATCGAT 1 cut(s) 1453
BspFNI CGCG 2 cut(s) 1148, 1799
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 6 cut(s) 758, 859, 878, 1717, 1770, 2027
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 1043
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 3 cut(s) 579, 751, 764
BspQI GCTCTTC 2 cut(s) 129, 1265
BspT104I TTCGAA 2 cut(s) 1118, 1268
BspT107I GGYRCC 3 cut(s) 857, 876, 1715
BspTI CTTAAG 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 1621, 1889
BsrGI TGTACA 1 cut(s) 1598
BsrI ACTGG 3 cut(s) 109, 1649, 1826
BssAI RCCGGY 2 cut(s) 1621, 1889
BssECI CCNNGG 7 cut(s) 230, 601, 661, 913, 1019, 1146, 1287
BssMI GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
BssNI GRCGYC 3 cut(s) 877, 1002, 1960
BssT1I CCWWGG 2 cut(s) 601, 913
Bst2UI CCWGG 3 cut(s) 1020, 1289, 1521
Bst4CI ACNGT 3 cut(s) 272, 1302, 1484
Bst6I CTCTTC 5 cut(s) 129, 206, 797, 1265, 1878
BstACI GRCGYC 3 cut(s) 877, 1002, 1960
BstAFI CTTAAG 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 1598
BstBI TTCGAA 2 cut(s) 1118, 1268
BstDEI CTNAG 6 cut(s) 828, 961, 1123, 1393, 1423, 1974
BstDSI CCRYGG 1 cut(s) 1146
BstF5I GGATG 4 cut(s) 274, 306, 1710, 1879
BstFNI CGCG 2 cut(s) 1148, 1799
BstH2I RGCGCY 3 cut(s) 119, 880, 1974
BstHHI GCGC 5 cut(s) 118, 879, 1294, 1799, 1973
BstKTI GATC 8 cut(s) 203, 304, 410, 475, 574, 759, 1141, 1453
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
BstMWI GCNNNNNNNGC 5 cut(s) 452, 962, 1317, 1525, 1805
BstNI CCWGG 3 cut(s) 1020, 1289, 1521
BstNSI RCATGY 4 cut(s) 419, 935, 1517, 1599
BstSCI CCNGG 5 cut(s) 229, 1018, 1077, 1287, 1519
BstSFI CTRYAG 1 cut(s) 1050
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 2 cut(s) 1148, 1799
BstV1I GCAGC 5 cut(s) 324, 940, 1036, 1298, 1792
BstV2I GAAGAC 3 cut(s) 156, 1409, 1851
BstX2I RGATCY 2 cut(s) 571, 756
BstYI RGATCY 2 cut(s) 571, 756
Bsu15I ATCGAT 1 cut(s) 1453
BsuRI GGCC 6 cut(s) 108, 405, 435, 1088, 1234, 1889
BsuTUI ATCGAT 1 cut(s) 1453
BtgI CCRYGG 1 cut(s) 1146
BtgZI GCGATG 1 cut(s) 2001
BtsCI GGATG 4 cut(s) 274, 306, 1710, 1879
BtsIMutI CAGTG 4 cut(s) 98, 1131, 1298, 1833
BveI ACCTGC 1 cut(s) 1043
CciI TCATGA 1 cut(s) 265
CfoI GCGC 5 cut(s) 118, 879, 1294, 1799, 1973
Cfr10I RCCGGY 2 cut(s) 1621, 1889
Cfr13I GGNCC 4 cut(s) 403, 433, 910, 1232
Cfr42I CCGCGG 1 cut(s) 1149
ClaI ATCGAT 1 cut(s) 1453
Csp6I GTAC 7 cut(s) 451, 787, 1189, 1197, 1587, 1599, 1716
CviQI GTAC 7 cut(s) 451, 787, 1189, 1197, 1587, 1599, 1716
DdeI CTNAG 6 cut(s) 828, 961, 1123, 1393, 1423, 1974
DinI GGCGCC 1 cut(s) 878
DpnI GATC 8 cut(s) 202, 303, 409, 474, 573, 758, 1140, 1452
DpnII GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
DraI TTTAAA 1 cut(s) 1950
EaeI YGGCCR 1 cut(s) 1086
Eam1104I CTCTTC 5 cut(s) 129, 206, 797, 1265, 1878
EarI CTCTTC 5 cut(s) 129, 206, 797, 1265, 1878
Eco130I CCWWGG 2 cut(s) 601, 913
Eco32I GATATC 1 cut(s) 1785
Eco47I GGWCC 1 cut(s) 910
Eco57I CTGAAG 5 cut(s) 104, 189, 1155, 1550, 1902
Eco88I CYCGRG 1 cut(s) 660
EcoO109I RGGNCCY 2 cut(s) 910, 1232
EcoRI GAATTC 1 cut(s) 1696
EcoRII CCWGG 3 cut(s) 1018, 1287, 1519
EcoRV GATATC 1 cut(s) 1785
EcoT14I CCWWGG 2 cut(s) 601, 913
EcoT22I ATGCAT 4 cut(s) 150, 1460, 1575, 2072
EgeI GGCGCC 1 cut(s) 878
EheI GGCGCC 1 cut(s) 878
ErhI CCWWGG 2 cut(s) 601, 913
FalI AAGNNNNNCTT 2 cut(s) 1905, 1937
FaqI GGGAC 2 cut(s) 1461, 1823
FauI CCCGC 1 cut(s) 1333
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 9 cut(s) 313, 954, 1050, 1146, 1312, 1358, 1442, 1806, 1931
FokI GGATG 4 cut(s) 261, 293, 1717, 1886
Fsp4HI GCNGC 9 cut(s) 313, 954, 1050, 1146, 1312, 1358, 1442, 1806, 1931
FspBI CTAG 6 cut(s) 426, 630, 873, 950, 1038, 2111
GlaI GCGC 5 cut(s) 117, 878, 1293, 1798, 1972
GluI GCNGC 9 cut(s) 313, 954, 1050, 1146, 1312, 1358, 1442, 1806, 1931
HaeII RGCGCY 3 cut(s) 119, 880, 1974
HaeIII GGCC 6 cut(s) 108, 405, 435, 1088, 1234, 1889
HapII CCGG 6 cut(s) 230, 278, 351, 1079, 1622, 1890
HhaI GCGC 5 cut(s) 118, 879, 1294, 1799, 1973
Hin1I GRCGYC 3 cut(s) 877, 1002, 1960
Hin6I GCGC 5 cut(s) 116, 877, 1292, 1797, 1971
HinP1I GCGC 5 cut(s) 116, 877, 1292, 1797, 1971
HincII GTYRAC 3 cut(s) 345, 1006, 1940
HindII GTYRAC 3 cut(s) 345, 1006, 1940
HindIII AAGCTT 2 cut(s) 290, 707
HpaII CCGG 6 cut(s) 230, 278, 351, 1079, 1622, 1890
HphI GGTGA 4 cut(s) 1067, 1196, 1606, 1904
Hpy166II GTNNAC 5 cut(s) 225, 345, 451, 1006, 1940
Hpy188I TCNGA 6 cut(s) 84, 169, 299, 928, 1396, 1882
Hpy188III TCNNGA 5 cut(s) 244, 266, 1639, 1871, 1964
Hpy8I GTNNAC 5 cut(s) 225, 345, 451, 1006, 1940
Hpy99I CGWCG 2 cut(s) 1004, 1962
HpyAV CCTTC 8 cut(s) 43, 175, 261, 500, 1310, 1525, 1744, 1961
HpyCH4III ACNGT 3 cut(s) 272, 1302, 1484
HpyCH4IV ACGT 3 cut(s) 1002, 1960, 2064
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 962, 1317, 1525, 1805
HpyF3I CTNAG 6 cut(s) 828, 961, 1123, 1393, 1423, 1974
HpySE526I ACGT 3 cut(s) 1002, 1960, 2064
Hsp92I GRCGYC 3 cut(s) 877, 1002, 1960
HspAI GCGC 5 cut(s) 116, 877, 1292, 1797, 1971
KasI GGCGCC 1 cut(s) 876
KpnI GGTACC 1 cut(s) 1719
KroI GCCGGC 1 cut(s) 1621
KroNI GCCGGC 1 cut(s) 1623
KspI CCGCGG 1 cut(s) 1149
Kzo9I GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
LguI GCTCTTC 2 cut(s) 129, 1265
LmnI GCTCC 2 cut(s) 317, 2031
Lsp1109I GCAGC 5 cut(s) 324, 940, 1036, 1298, 1792
LweI GCATC 8 cut(s) 325, 464, 709, 932, 1374, 1390, 1445, 2079
MaeI CTAG 6 cut(s) 426, 630, 873, 950, 1038, 2111
MaeII ACGT 3 cut(s) 1002, 1960, 2064
MaeIII GTNAC 1 cut(s) 1651
MalI GATC 8 cut(s) 202, 303, 409, 474, 573, 758, 1140, 1452
MboI GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
MflI RGATCY 2 cut(s) 571, 756
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 1088
MluCI AATT 6 cut(s) 558, 1496, 1544, 1696, 1720, 1993
MluNI TGGCCA 1 cut(s) 1088
Mly113I GGCGCC 1 cut(s) 877
MlyI GAGTC 4 cut(s) 380, 836, 1544, 1589
MmeI TCCRAC 1 cut(s) 1534
Mox20I TGGCCA 1 cut(s) 1088
Mph1103I ATGCAT 4 cut(s) 150, 1460, 1575, 2072
MroNI GCCGGC 1 cut(s) 1621
MscI TGGCCA 1 cut(s) 1088
MseI TTAA 5 cut(s) 21, 111, 153, 288, 1949
MslI CAYNNNNRTG 4 cut(s) 264, 1740, 1872, 1914
Msp20I TGGCCA 1 cut(s) 1088
MspA1I CMGCKG 2 cut(s) 315, 1148
MspCI CTTAAG 1 cut(s) 110
MspI CCGG 6 cut(s) 230, 278, 351, 1079, 1622, 1890
MspR9I CCNGG 5 cut(s) 231, 1020, 1079, 1289, 1521
Mva1269I GAATGC 1 cut(s) 1249
MvaI CCWGG 3 cut(s) 1020, 1289, 1521
MvnI CGCG 2 cut(s) 1148, 1799
MwoI GCNNNNNNNGC 5 cut(s) 452, 962, 1317, 1525, 1805
NaeI GCCGGC 1 cut(s) 1623
NarI GGCGCC 1 cut(s) 877
NciI CCSGG 2 cut(s) 231, 1079
NdeII GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
NgoMIV GCCGGC 1 cut(s) 1621
NheI GCTAGC 1 cut(s) 1037
NlaIV GGNNCC 6 cut(s) 758, 859, 878, 1717, 1770, 2027
NmeAIII GCCGAG 1 cut(s) 916
NsiI ATGCAT 4 cut(s) 150, 1460, 1575, 2072
NspI RCATGY 4 cut(s) 419, 935, 1517, 1599
NspV TTCGAA 2 cut(s) 1118, 1268
PagI TCATGA 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 1043
PciI ACATGT 2 cut(s) 415, 1513
PciSI GCTCTTC 2 cut(s) 129, 1265
PctI GAATGC 1 cut(s) 1249
PdiI GCCGGC 1 cut(s) 1623
PfeI GAWTC 7 cut(s) 59, 235, 941, 1058, 1283, 1376, 1904
PflFI GACNNNGTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 9 cut(s) 314, 955, 1051, 1147, 1313, 1359, 1443, 1807, 1932
PleI GAGTC 4 cut(s) 379, 836, 1544, 1588
PluTI GGCGCC 1 cut(s) 880
PpsI GAGTC 4 cut(s) 379, 836, 1544, 1588
PpuMI RGGWCCY 1 cut(s) 910
PscI ACATGT 2 cut(s) 415, 1513
PsiI TTATAA 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 1018, 1287, 1519
PspGI CCWGG 3 cut(s) 1018, 1287, 1519
PspN4I GGNNCC 6 cut(s) 758, 859, 878, 1717, 1770, 2027
PspPI GGNCC 4 cut(s) 403, 433, 910, 1232
PspPPI RGGWCCY 1 cut(s) 910
PstI CTGCAG 1 cut(s) 1054
PsuI RGATCY 2 cut(s) 571, 756
PsyI GACNNNGTC 1 cut(s) 620
RsaI GTAC 7 cut(s) 452, 788, 1190, 1198, 1588, 1600, 1717
RsaNI GTAC 7 cut(s) 451, 787, 1189, 1197, 1587, 1599, 1716
RseI CAYNNNNRTG 4 cut(s) 264, 1740, 1872, 1914
SacII CCGCGG 1 cut(s) 1149
SalI GTCGAC 1 cut(s) 343
SapI GCTCTTC 2 cut(s) 129, 1265
SaqAI TTAA 5 cut(s) 21, 111, 153, 288, 1949
SatI GCNGC 9 cut(s) 313, 954, 1050, 1146, 1312, 1358, 1442, 1806, 1931
Sau3AI GATC 8 cut(s) 200, 301, 407, 472, 571, 756, 1138, 1450
Sau96I GGNCC 4 cut(s) 403, 433, 910, 1232
ScaI AGTACT 1 cut(s) 1190
SchI GAGTC 4 cut(s) 380, 836, 1544, 1589
ScrFI CCNGG 5 cut(s) 231, 1020, 1079, 1289, 1521
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 8 cut(s) 325, 464, 709, 932, 1374, 1390, 1445, 2079
SfcI CTRYAG 1 cut(s) 1050
SfoI GGCGCC 1 cut(s) 878
Sfr303I CCGCGG 1 cut(s) 1149
SfuI TTCGAA 2 cut(s) 1118, 1268
SgrBI CCGCGG 1 cut(s) 1149
SinI GGWCC 1 cut(s) 910
SmiMI CAYNNNNRTG 4 cut(s) 264, 1740, 1872, 1914
SmlI CTYRAG 3 cut(s) 110, 543, 1105
SmoI CTYRAG 3 cut(s) 110, 543, 1105
Sse9I AATT 6 cut(s) 558, 1496, 1544, 1696, 1720, 1993
SspDI GGCGCC 1 cut(s) 876
SspI AATATT 1 cut(s) 1093
SspMI CTAG 6 cut(s) 426, 630, 873, 950, 1038, 2111
StyD4I CCNGG 5 cut(s) 229, 1018, 1077, 1287, 1519
StyI CCWWGG 2 cut(s) 601, 913
TaaI ACNGT 3 cut(s) 272, 1302, 1484
TaiI ACGT 3 cut(s) 1005, 1963, 2067
TasI AATT 6 cut(s) 558, 1496, 1544, 1696, 1720, 1993
TatI WGTACW 2 cut(s) 1188, 1598
TauI GCSGC 4 cut(s) 1148, 1360, 1444, 1933
TfiI GAWTC 7 cut(s) 59, 235, 941, 1058, 1283, 1376, 1904
Tru1I TTAA 5 cut(s) 21, 111, 153, 288, 1949
Tru9I TTAA 5 cut(s) 21, 111, 153, 288, 1949
TscAI CASTG 4 cut(s) 105, 1138, 1305, 1833
TseI GCWGC 5 cut(s) 312, 953, 1049, 1311, 1805
TspDTI ATGAA 6 cut(s) 482, 524, 741, 806, 1911, 2092
TspRI CASTG 4 cut(s) 105, 1138, 1305, 1833
Tth111I GACNNNGTC 1 cut(s) 620
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 110
VneI GTGCAC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 910
XapI RAATTY 1 cut(s) 1696
XceI RCATGY 4 cut(s) 419, 935, 1517, 1599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1169
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 6 cut(s) 426, 630, 873, 950, 1038, 2111
ZraI GACGTC 2 cut(s) 1003, 1961
ZrmI AGTACT 1 cut(s) 1190
Zsp2I ATGCAT 4 cut(s) 150, 1460, 1575, 2072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.