Rmu_sc0008923.1_g000018

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008923.1
OG0000179
Physical Location & Seq
Forward (+)
65131 .. 67793
2663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008923.1_g000018.1.cds

Sequence Viewer

Length: 1119 bp
atgcagtggctggatgaggtgtatgtcgatggtaaggctcgggtcaactcacaggctctttttttgttcaaagcatgtggcaatgtgaggatgggtgcatttgccagggtattttcggagaggagagtgattatcaaccgcaataacatctcacatttagacttcatatatctcatcagccttcgatccggatatctttctctcagacaggataaccgactagtcattcagccatacagtccacatcggttcagtcgacagtttggttacgtccaagacattcctggcagccttaagaatgacattcgcaccagctcgaaagtgtatcgttctacactagtgaagacgacgaaagtggcgtctactaatgaatccttgcacaagcctctgaaagaaaaagaagccaaggacgtcaaccgctcggtgccgccccgtcgccaaaatgtgattacttgtgaagtcgattgtagcaccaacatccctgtacctcctgataaggctttgctcccagatagcaactgtcaggctcatctggtcgacattctagaagattatggagactctttagattcgcacgtcgctttggtccgtccacttaagatgaaaagacaagcaatccaagaaagaaggcgtagtgggagaagtagtagcaattatagtgaggtacactttaagcgtaagaagaccgacatcaaccttggccctacttattgcgatctcaatgctaagtatactctgagtaccgactttcttggtgacattccaacttcttcacaaccgatgctgcaacgtaatgagggtggagagattgatggtcttccactttgggggaacaatgtcgcctcttcagaccctatatgtgttccttctacatcgaaacttgaggcttactctttatccacgaaaggaacatccaatgcaaagaatgactcacagcacattgaccctacaagtccacttaccaaggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctgctattatagatgctagccaaagacttcgtgatattcgtcaacaagctgctaccgcagtttgtgaacaaattgaagatatgataatgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

372

Amino Acids

41.59

Weight (kDa)

9.2

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 420
AccI GTMKAC 4 cut(s) 256, 362, 537, 731
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 4 cut(s) 139, 418, 428, 1080
AclWI GGATC 1 cut(s) 180
AcuI CTGAAG 1 cut(s) 831
AcyI GRCGYC 2 cut(s) 359, 411
AfaI GTAC 3 cut(s) 486, 666, 742
AfiI CCNNNNNNNGG 1 cut(s) 827
AflII CTTAAG 2 cut(s) 293, 596
AgsI TTSAA 2 cut(s) 70, 1100
AhlI ACTAGT 2 cut(s) 220, 337
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 2 cut(s) 104, 283
AluBI AGCT 3 cut(s) 315, 1025, 1073
AluI AGCT 3 cut(s) 315, 1025, 1073
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 1 cut(s) 180
AlwNI CAGNNNCTG 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 2 cut(s) 700, 1008
ApeKI GCWGC 4 cut(s) 288, 784, 1025, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspS9I GGNCC 2 cut(s) 586, 701
AsuHPI GGTGA 1 cut(s) 767
AsuNHI GCTAGC 1 cut(s) 1040
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 424
BbsI GAAGAC 3 cut(s) 350, 689, 809
BbvI GCAGC 4 cut(s) 300, 771, 1012, 1060
BccI CCATC 3 cut(s) 23, 85, 806
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 2 cut(s) 106, 285
BcoDI GTCTC 1 cut(s) 552
BcuI ACTAGT 2 cut(s) 220, 337
BfaI CTAG 4 cut(s) 221, 338, 545, 1041
BfrI CTTAAG 2 cut(s) 293, 596
BisI GCNGC 5 cut(s) 289, 428, 785, 1026, 1074
BlsI GCNGC 5 cut(s) 290, 429, 786, 1027, 1075
Bme1390I CCNGG 2 cut(s) 106, 285
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 39
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 2 cut(s) 586, 701
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 2 cut(s) 106, 285
BmsI GCATC 3 cut(s) 771, 979, 1027
BmtI GCTAGC 1 cut(s) 1044
BpiI GAAGAC 3 cut(s) 350, 689, 809
BplI GAGNNNNNCTC 2 cut(s) 875, 907
Bpu10I CCTNAGC 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 902
BsaHI GRCGYC 2 cut(s) 359, 411
BsaJI CCNNGG 4 cut(s) 105, 405, 697, 963
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse3DI GCAATG 1 cut(s) 88
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 2 cut(s) 106, 285
BseDI CCNNGG 4 cut(s) 105, 405, 697, 963
BseGI GGATG 5 cut(s) 19, 96, 477, 911, 970
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 217, 728, 996
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 4 cut(s) 300, 771, 1012, 1060
BshFI GGCC 2 cut(s) 702, 1010
BshNI GGYRCC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 1 cut(s) 552
BsnI GGCC 2 cut(s) 702, 1010
BsoBI CYCGRG 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 185, 715
BspACI CCGC 4 cut(s) 139, 418, 428, 1080
BspANI GGCC 2 cut(s) 702, 1010
BspCNI CTCAG 3 cut(s) 216, 729, 997
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 426
BspOI GCTAGC 1 cut(s) 1044
BspPI GGATC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 424
BspTI CTTAAG 2 cut(s) 293, 596
BsrBI CCGCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 105, 405, 697, 963
BssMI GATC 2 cut(s) 185, 715
BssNAI GTATAC 1 cut(s) 732
BssNI GRCGYC 2 cut(s) 359, 411
BssT1I CCWWGG 3 cut(s) 405, 697, 963
Bst1107I GTATAC 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 106, 285
Bst4CI ACNGT 3 cut(s) 239, 261, 521
Bst6I CTCTTC 1 cut(s) 850
BstACI GRCGYC 2 cut(s) 359, 411
BstAFI CTTAAG 2 cut(s) 293, 596
BstC8I GCNNGC 1 cut(s) 1042
BstDEI CTNAG 5 cut(s) 203, 726, 737, 978, 1005
BstF5I GGATG 5 cut(s) 19, 96, 477, 911, 970
BstKTI GATC 2 cut(s) 188, 718
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 2 cut(s) 185, 715
BstMWI GCNNNNNNNGC 1 cut(s) 1079
BstNI CCWGG 2 cut(s) 106, 285
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 104, 283
BstV1I GCAGC 4 cut(s) 300, 771, 1012, 1060
BstV2I GAAGAC 3 cut(s) 350, 689, 809
BstZ17I GTATAC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 702, 1010
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 5 cut(s) 19, 96, 477, 911, 970
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 1042
CaiI CAGNNNCTG 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 586, 701
CseI GACGC 1 cut(s) 348
Csp6I GTAC 3 cut(s) 485, 665, 741
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 1 cut(s) 75
CviQI GTAC 3 cut(s) 485, 665, 741
DdeI CTNAG 5 cut(s) 203, 726, 737, 978, 1005
DpnI GATC 2 cut(s) 187, 717
DpnII GATC 2 cut(s) 185, 715
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Eco130I CCWWGG 3 cut(s) 405, 697, 963
Eco147I AGGCCT 1 cut(s) 1010
Eco32I GATATC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 104, 283
EcoRV GATATC 1 cut(s) 194
EcoT14I CCWWGG 3 cut(s) 405, 697, 963
ErhI CCWWGG 3 cut(s) 405, 697, 963
FaeI CATG 1 cut(s) 78
FatI CATG 1 cut(s) 74
FblI GTMKAC 4 cut(s) 256, 362, 537, 731
Fnu4HI GCNGC 5 cut(s) 289, 428, 785, 1026, 1074
FokI GGATG 5 cut(s) 26, 103, 464, 898, 957
Fsp4HI GCNGC 5 cut(s) 289, 428, 785, 1026, 1074
FspBI CTAG 4 cut(s) 221, 338, 545, 1041
GluI GCNGC 5 cut(s) 289, 428, 785, 1026, 1074
HaeIII GGCC 2 cut(s) 702, 1010
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 348
Hin1I GRCGYC 2 cut(s) 359, 411
Hin1II CATG 1 cut(s) 78
HincII GTYRAC 5 cut(s) 46, 257, 415, 538, 1067
HindII GTYRAC 5 cut(s) 46, 257, 415, 538, 1067
HinfI GANTC 4 cut(s) 371, 560, 569, 929
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 767
Hpy188I TCNGA 7 cut(s) 118, 206, 390, 738, 850, 987, 1006
Hpy188III TCNNGA 4 cut(s) 189, 491, 545, 1055
Hpy99I CGWCG 3 cut(s) 352, 438, 581
HpyAV CCTTC 3 cut(s) 191, 621, 876
HpyCH4III ACNGT 3 cut(s) 239, 261, 521
HpyCH4IV ACGT 4 cut(s) 270, 411, 576, 790
HpyCH4V TGCA 6 cut(s) 4, 98, 379, 787, 920, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 1079
HpyF3I CTNAG 5 cut(s) 203, 726, 737, 978, 1005
HpySE526I ACGT 4 cut(s) 270, 411, 576, 790
Hsp92I GRCGYC 2 cut(s) 359, 411
Hsp92II CATG 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 2 cut(s) 185, 715
LmnI GCTCC 2 cut(s) 510, 1022
Lsp1109I GCAGC 4 cut(s) 300, 771, 1012, 1060
LweI GCATC 3 cut(s) 771, 979, 1027
MaeI CTAG 4 cut(s) 221, 338, 545, 1041
MaeII ACGT 4 cut(s) 270, 411, 576, 790
MaeIII GTNAC 2 cut(s) 266, 755
MalI GATC 2 cut(s) 187, 717
MbiI CCGCTC 1 cut(s) 420
MboI GATC 2 cut(s) 185, 715
MboII GAAGA 7 cut(s) 355, 560, 694, 762, 809, 837, 1112
MluCI AATT 2 cut(s) 652, 1095
MlyI GAGTC 2 cut(s) 554, 923
MmeI TCCRAC 1 cut(s) 788
MroI TCCGGA 1 cut(s) 188
MseI TTAA 3 cut(s) 294, 597, 672
MspCI CTTAAG 2 cut(s) 293, 596
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 106, 285
MvaI CCWGG 2 cut(s) 106, 285
MwoI GCNNNNNNNGC 1 cut(s) 1079
NdeII GATC 2 cut(s) 185, 715
NheI GCTAGC 1 cut(s) 1040
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 755
NspI RCATGY 1 cut(s) 78
PceI AGGCCT 1 cut(s) 1010
PcsI WCGNNNNNNNCGW 3 cut(s) 253, 356, 1060
PfeI GAWTC 2 cut(s) 371, 569
PkrI GCNGC 5 cut(s) 290, 429, 786, 1027, 1075
PleI GAGTC 2 cut(s) 554, 923
PpsI GAGTC 2 cut(s) 554, 923
Psp6I CCWGG 2 cut(s) 104, 283
PspGI CCWGG 2 cut(s) 104, 283
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 2 cut(s) 586, 701
PstNI CAGNNNCTG 1 cut(s) 10
RsaI GTAC 3 cut(s) 486, 666, 742
RsaNI GTAC 3 cut(s) 485, 665, 741
SalI GTCGAC 2 cut(s) 255, 536
SaqAI TTAA 3 cut(s) 294, 597, 672
SatI GCNGC 5 cut(s) 289, 428, 785, 1026, 1074
Sau3AI GATC 2 cut(s) 185, 715
Sau96I GGNCC 2 cut(s) 586, 701
SchI GAGTC 2 cut(s) 554, 923
ScrFI CCNGG 2 cut(s) 106, 285
SfaNI GCATC 3 cut(s) 771, 979, 1027
SinI GGWCC 1 cut(s) 586
SmlI CTYRAG 3 cut(s) 293, 596, 881
SmoI CTYRAG 3 cut(s) 293, 596, 881
SpeI ACTAGT 2 cut(s) 220, 337
Sse9I AATT 2 cut(s) 652, 1095
SseBI AGGCCT 1 cut(s) 1010
SsiI CCGC 4 cut(s) 139, 418, 428, 1080
SspMI CTAG 4 cut(s) 221, 338, 545, 1041
StuI AGGCCT 1 cut(s) 1010
StyD4I CCNGG 2 cut(s) 104, 283
StyI CCWWGG 3 cut(s) 405, 697, 963
TaaI ACNGT 3 cut(s) 239, 261, 521
TaiI ACGT 4 cut(s) 273, 414, 579, 793
TaqI TCGA 7 cut(s) 27, 184, 256, 317, 462, 537, 875
TaqII GACCGA 1 cut(s) 701
TasI AATT 2 cut(s) 652, 1095
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 371, 569
Tru1I TTAA 3 cut(s) 294, 597, 672
Tru9I TTAA 3 cut(s) 294, 597, 672
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 4 cut(s) 288, 784, 1025, 1073
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 3 cut(s) 154, 384, 617
TspGWI ACGGA 1 cut(s) 578
Vha464I CTTAAG 2 cut(s) 293, 596
VpaK11BI GGWCC 1 cut(s) 586
XbaI TCTAGA 1 cut(s) 544
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XmiI GTMKAC 4 cut(s) 256, 362, 537, 731
XspI CTAG 4 cut(s) 221, 338, 545, 1041
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.