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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 708, 1708 |
| AccII | CGCG | 1 cut(s) | 1276 |
| AciI | CCGC | 2 cut(s) | 1392, 1604 |
| AclI | AACGTT | 1 cut(s) | 2320 |
| AclWI | GGATC | 1 cut(s) | 2257 |
| AcuI | CTGAAG | 1 cut(s) | 25 |
| AfaI | GTAC | 9 cut(s) | 126, 350, 1735, 1918, 2199, 2232, 2291, 2387, 2463 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1393 |
| AflIII | ACRYGT | 5 cut(s) | 77, 660, 703, 766, 2003 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1783 |
| AjiI | CACGTC | 1 cut(s) | 2006 |
| Alw21I | GWGCWC | 2 cut(s) | 49, 2602 |
| AlwI | GGATC | 1 cut(s) | 2257 |
| AoxI | GGCC | 6 cut(s) | 807, 979, 1027, 1615, 1899, 2311 |
| ApeKI | GCWGC | 1 cut(s) | 1551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2461, 2493 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 880, 921, 968 |
| AspS9I | GGNCC | 8 cut(s) | 428, 807, 979, 1027, 1411, 1616, 1899, 2689 |
| AsuHPI | GGTGA | 5 cut(s) | 221, 1217, 1705, 1820, 2555 |
| AvaII | GGWCC | 3 cut(s) | 428, 1411, 2689 |
| AxyI | CCTNAGG | 2 cut(s) | 233, 1620 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2631, 2663 |
| BauI | CACGAG | 2 cut(s) | 2498, 2575 |
| BbsI | GAAGAC | 3 cut(s) | 21, 218, 1009 |
| Bbv12I | GWGCWC | 2 cut(s) | 49, 2602 |
| BbvI | GCAGC | 1 cut(s) | 1563 |
| BccI | CCATC | 2 cut(s) | 1952, 2700 |
| BceAI | ACGGC | 6 cut(s) | 794, 966, 1014, 1342, 1853, 2272 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2347, 2381 |
| BfaI | CTAG | 1 cut(s) | 2097 |
| BfmI | CTRYAG | 1 cut(s) | 1296 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 815, 987, 1035, 2494 |
| BisI | GCNGC | 2 cut(s) | 1552, 1605 |
| BlsI | GCNGC | 2 cut(s) | 1553, 1606 |
| Bme18I | GGWCC | 3 cut(s) | 428, 1411, 2689 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1783 |
| BmgBI | CACGTC | 1 cut(s) | 2006 |
| BmgT120I | GGNCC | 8 cut(s) | 428, 807, 979, 1027, 1411, 1616, 1899, 2689 |
| BmiI | GGNNCC | 2 cut(s) | 808, 1350 |
| BmsI | GCATC | 7 cut(s) | 571, 687, 1512, 1644, 1824, 2422, 2663 |
| BpiI | GAAGAC | 3 cut(s) | 21, 218, 1009 |
| BpmI | CTGGAG | 1 cut(s) | 1881 |
| BpuEI | CTTGAG | 2 cut(s) | 786, 1413 |
| BsaAI | YACGTR | 1 cut(s) | 2230 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1658, 1748, 1943 |
| BsaJI | CCNNGG | 3 cut(s) | 1341, 1555, 2235 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1854, 1884 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1393 |
| Bse1I | ACTGG | 2 cut(s) | 1618, 1864 |
| Bse21I | CCTNAGG | 2 cut(s) | 233, 1620 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1658, 1748, 1943 |
| BseDI | CCNNGG | 3 cut(s) | 1341, 1555, 2235 |
| BseGI | GGATG | 3 cut(s) | 586, 1476, 1815 |
| BseJI | GATNNNNATC | 3 cut(s) | 1658, 1748, 1943 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1393 |
| BseMII | CTCAG | 1 cut(s) | 247 |
| BseNI | ACTGG | 2 cut(s) | 1618, 1864 |
| BseRI | GAGGAG | 3 cut(s) | 2258, 2405, 2524 |
| BseXI | GCAGC | 1 cut(s) | 1563 |
| BsgI | GTGCAG | 3 cut(s) | 1381, 2392, 2428 |
| Bsh1236I | CGCG | 1 cut(s) | 1276 |
| BshFI | GGCC | 6 cut(s) | 809, 981, 1029, 1617, 1901, 2313 |
| BsiHKAI | GWGCWC | 2 cut(s) | 49, 2602 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1393 |
| BsmI | GAATGC | 3 cut(s) | 77, 313, 1963 |
| BsnI | GGCC | 6 cut(s) | 809, 981, 1029, 1617, 1901, 2313 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 2602 |
| Bsp1407I | TGTACA | 3 cut(s) | 124, 1733, 1916 |
| Bsp143I | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| Bsp19I | CCATGG | 1 cut(s) | 1555 |
| BspACI | CCGC | 2 cut(s) | 1392, 1604 |
| BspANI | GGCC | 6 cut(s) | 809, 981, 1029, 1617, 1901, 2313 |
| BspCNI | CTCAG | 1 cut(s) | 246 |
| BspFNI | CGCG | 1 cut(s) | 1276 |
| BspLI | GGNNCC | 2 cut(s) | 808, 1350 |
| BspPI | GGATC | 1 cut(s) | 2257 |
| BsrGI | TGTACA | 3 cut(s) | 124, 1733, 1916 |
| BsrI | ACTGG | 2 cut(s) | 1618, 1864 |
| BssECI | CCNNGG | 3 cut(s) | 1341, 1555, 2235 |
| BssMI | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| BssSI | CACGAG | 2 cut(s) | 2498, 2575 |
| BssT1I | CCWWGG | 2 cut(s) | 1341, 1555 |
| Bst2BI | CACGAG | 2 cut(s) | 2498, 2575 |
| Bst4CI | ACNGT | 6 cut(s) | 1092, 1388, 1415, 1781, 2197, 2296 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 684 |
| BstAUI | TGTACA | 3 cut(s) | 124, 1733, 1916 |
| BstBAI | YACGTR | 1 cut(s) | 2230 |
| BstC8I | GCNNGC | 4 cut(s) | 296, 689, 2426, 2608 |
| BstDEI | CTNAG | 4 cut(s) | 23, 233, 1186, 1620 |
| BstDSI | CCRYGG | 1 cut(s) | 1555 |
| BstF5I | GGATG | 3 cut(s) | 586, 1476, 1815 |
| BstFNI | CGCG | 1 cut(s) | 1276 |
| BstKTI | GATC | 8 cut(s) | 22, 264, 951, 996, 1044, 1813, 2067, 2252 |
| BstMBI | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| BstNSI | RCATGY | 7 cut(s) | 81, 664, 691, 707, 746, 759, 1734 |
| BstSFI | CTRYAG | 1 cut(s) | 1296 |
| BstSNI | TACGTA | 1 cut(s) | 2230 |
| BstUI | CGCG | 1 cut(s) | 1276 |
| BstV1I | GCAGC | 1 cut(s) | 1563 |
| BstV2I | GAAGAC | 3 cut(s) | 21, 218, 1009 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 462 |
| Bsu36I | CCTNAGG | 2 cut(s) | 233, 1620 |
| BsuRI | GGCC | 6 cut(s) | 809, 981, 1029, 1617, 1901, 2313 |
| BtgI | CCRYGG | 1 cut(s) | 1555 |
| BtgZI | GCGATG | 1 cut(s) | 2102 |
| BtrI | CACGTC | 1 cut(s) | 2006 |
| BtsCI | GGATG | 3 cut(s) | 586, 1476, 1815 |
| BtsI | GCAGTG | 1 cut(s) | 1369 |
| BtsIMutI | CAGTG | 1 cut(s) | 1369 |
| Cac8I | GCNNGC | 4 cut(s) | 296, 689, 2426, 2608 |
| Cfr13I | GGNCC | 8 cut(s) | 428, 807, 979, 1027, 1411, 1616, 1899, 2689 |
| Csp6I | GTAC | 9 cut(s) | 125, 349, 1734, 1917, 2198, 2231, 2290, 2386, 2462 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1418, 1453 |
| CviQI | GTAC | 9 cut(s) | 125, 349, 1734, 1917, 2198, 2231, 2290, 2386, 2462 |
| DdeI | CTNAG | 4 cut(s) | 23, 233, 1186, 1620 |
| DpnI | GATC | 8 cut(s) | 21, 263, 950, 995, 1043, 1812, 2066, 2251 |
| DpnII | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1783 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1783 |
| Eco105I | TACGTA | 1 cut(s) | 2230 |
| Eco130I | CCWWGG | 2 cut(s) | 1341, 1555 |
| Eco47I | GGWCC | 3 cut(s) | 428, 1411, 2689 |
| Eco57I | CTGAAG | 1 cut(s) | 25 |
| Eco81I | CCTNAGG | 2 cut(s) | 233, 1620 |
| EcoT14I | CCWWGG | 2 cut(s) | 1341, 1555 |
| EcoT22I | ATGCAT | 1 cut(s) | 2437 |
| ErhI | CCWWGG | 2 cut(s) | 1341, 1555 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 295, 327, 1871, 1903 |
| FauI | CCCGC | 1 cut(s) | 1385 |
| FauNDI | CATATG | 2 cut(s) | 820, 2445 |
| FblI | GTMKAC | 2 cut(s) | 708, 1708 |
| Fnu4HI | GCNGC | 2 cut(s) | 1552, 1605 |
| FokI | GGATG | 3 cut(s) | 593, 1463, 1802 |
| Fsp4HI | GCNGC | 2 cut(s) | 1552, 1605 |
| FspBI | CTAG | 1 cut(s) | 2097 |
| GluI | GCNGC | 2 cut(s) | 1552, 1605 |
| GsuI | CTGGAG | 1 cut(s) | 1881 |
| HaeIII | GGCC | 6 cut(s) | 809, 981, 1029, 1617, 1901, 2313 |
| HincII | GTYRAC | 3 cut(s) | 1611, 1709, 1854 |
| HindII | GTYRAC | 3 cut(s) | 1611, 1709, 1854 |
| HindIII | AAGCTT | 8 cut(s) | 202, 292, 332, 1198, 1431, 1595, 2339, 2534 |
| HinfI | GANTC | 4 cut(s) | 268, 493, 1744, 1756 |
| HphI | GGTGA | 5 cut(s) | 221, 1217, 1705, 1820, 2555 |
| Hpy188I | TCNGA | 3 cut(s) | 44, 70, 1521 |
| Hpy188III | TCNNGA | 9 cut(s) | 265, 386, 490, 826, 952, 997, 1045, 1753, 2143 |
| Hpy99I | CGWCG | 3 cut(s) | 1591, 2473, 2615 |
| HpyAV | CCTTC | 5 cut(s) | 1223, 1402, 1490, 1720, 1770 |
| HpyCH4III | ACNGT | 6 cut(s) | 1092, 1388, 1415, 1781, 2197, 2296 |
| HpyF3I | CTNAG | 4 cut(s) | 23, 233, 1186, 1620 |
| Kzo9I | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| LmnI | GCTCC | 4 cut(s) | 1826, 2355, 2511, 2550 |
| Lsp1109I | GCAGC | 1 cut(s) | 1563 |
| LweI | GCATC | 7 cut(s) | 571, 687, 1512, 1644, 1824, 2422, 2663 |
| MaeI | CTAG | 1 cut(s) | 2097 |
| MalI | GATC | 8 cut(s) | 21, 263, 950, 995, 1043, 1812, 2066, 2251 |
| MboI | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| MfeI | CAATTG | 1 cut(s) | 1568 |
| MhlI | GDGCHC | 2 cut(s) | 49, 2602 |
| MmeI | TCCRAC | 1 cut(s) | 1173 |
| Mph1103I | ATGCAT | 1 cut(s) | 2437 |
| MroXI | GAANNNNTTC | 3 cut(s) | 880, 921, 968 |
| MslI | CAYNNNNRTG | 6 cut(s) | 686, 1458, 1520, 1773, 2480, 2519 |
| MunI | CAATTG | 1 cut(s) | 1568 |
| Mva1269I | GAATGC | 3 cut(s) | 77, 313, 1963 |
| MvnI | CGCG | 1 cut(s) | 1276 |
| NcoI | CCATGG | 1 cut(s) | 1555 |
| NdeI | CATATG | 2 cut(s) | 820, 2445 |
| NdeII | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| NlaIV | GGNNCC | 2 cut(s) | 808, 1350 |
| NmuCI | GTSAC | 6 cut(s) | 1262, 1460, 1693, 1775, 2191, 2561 |
| NsiI | ATGCAT | 1 cut(s) | 2437 |
| NspI | RCATGY | 7 cut(s) | 81, 664, 691, 707, 746, 759, 1734 |
| PaeI | GCATGC | 1 cut(s) | 691 |
| PciI | ACATGT | 3 cut(s) | 77, 660, 703 |
| PctI | GAATGC | 3 cut(s) | 77, 313, 1963 |
| PdmI | GAANNNNTTC | 3 cut(s) | 880, 921, 968 |
| PfeI | GAWTC | 4 cut(s) | 268, 493, 1744, 1756 |
| PflFI | GACNNNGTC | 1 cut(s) | 1466 |
| PkrI | GCNGC | 2 cut(s) | 1553, 1606 |
| Ppu21I | YACGTR | 1 cut(s) | 2230 |
| PscI | ACATGT | 3 cut(s) | 77, 660, 703 |
| Psp1406I | AACGTT | 1 cut(s) | 2320 |
| PspN4I | GGNNCC | 2 cut(s) | 808, 1350 |
| PspPI | GGNCC | 8 cut(s) | 428, 807, 979, 1027, 1411, 1616, 1899, 2689 |
| PsyI | GACNNNGTC | 1 cut(s) | 1466 |
| RsaI | GTAC | 9 cut(s) | 126, 350, 1735, 1918, 2199, 2232, 2291, 2387, 2463 |
| RsaNI | GTAC | 9 cut(s) | 125, 349, 1734, 1917, 2198, 2231, 2290, 2386, 2462 |
| RseI | CAYNNNNRTG | 6 cut(s) | 686, 1458, 1520, 1773, 2480, 2519 |
| SalI | GTCGAC | 1 cut(s) | 1707 |
| SatI | GCNGC | 2 cut(s) | 1552, 1605 |
| Sau3AI | GATC | 8 cut(s) | 19, 261, 948, 993, 1041, 1810, 2064, 2249 |
| Sau96I | GGNCC | 8 cut(s) | 428, 807, 979, 1027, 1411, 1616, 1899, 2689 |
| SduI | GDGCHC | 2 cut(s) | 49, 2602 |
| SfaNI | GCATC | 7 cut(s) | 571, 687, 1512, 1644, 1824, 2422, 2663 |
| SfcI | CTRYAG | 1 cut(s) | 1296 |
| SinI | GGWCC | 3 cut(s) | 428, 1411, 2689 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 686, 1458, 1520, 1773, 2480, 2519 |
| SmlI | CTYRAG | 2 cut(s) | 801, 1428 |
| SmoI | CTYRAG | 2 cut(s) | 801, 1428 |
| SnaBI | TACGTA | 1 cut(s) | 2230 |
| SphI | GCATGC | 1 cut(s) | 691 |
| SsiI | CCGC | 2 cut(s) | 1392, 1604 |
| SspI | AATATT | 2 cut(s) | 64, 1174 |
| SspMI | CTAG | 1 cut(s) | 2097 |
| StyI | CCWWGG | 2 cut(s) | 1341, 1555 |
| TaaI | ACNGT | 6 cut(s) | 1092, 1388, 1415, 1781, 2197, 2296 |
| TaqI | TCGA | 3 cut(s) | 324, 1708, 2063 |
| TatI | WGTACW | 4 cut(s) | 124, 1733, 1916, 2197 |
| TauI | GCSGC | 1 cut(s) | 1607 |
| TfiI | GAWTC | 4 cut(s) | 268, 493, 1744, 1756 |
| TscAI | CASTG | 1 cut(s) | 1369 |
| TseFI | GTSAC | 6 cut(s) | 1262, 1460, 1693, 1775, 2191, 2561 |
| TseI | GCWGC | 1 cut(s) | 1551 |
| Tsp45I | GTSAC | 6 cut(s) | 1262, 1460, 1693, 1775, 2191, 2561 |
| TspGWI | ACGGA | 5 cut(s) | 1341, 1773, 1808, 1839, 2392 |
| TspRI | CASTG | 1 cut(s) | 1369 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1466 |
| VpaK11BI | GGWCC | 3 cut(s) | 428, 1411, 2689 |
| XceI | RCATGY | 7 cut(s) | 81, 664, 691, 707, 746, 759, 1734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 366 |
| XmiI | GTMKAC | 2 cut(s) | 708, 1708 |
| XmnI | GAANNNNTTC | 3 cut(s) | 880, 921, 968 |
| XspI | CTAG | 1 cut(s) | 2097 |
| Zsp2I | ATGCAT | 1 cut(s) | 2437 |