Rroxscaffold_173G00435040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000173
OG0000179
Physical Location & Seq
Forward (+)
326322 .. 334919
8598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_173G00435040.1

Sequence Viewer

Length: 297 bp
ATGAACACCAAGTGCGTGGTAACGTTGCCGATCCGAGTGATATCACGGAGTACATGGTTACCCGTGACTATGTCGATTGGTGGTCTAAAGTGTATCATTCTACACCAGTTGAAGACAATGAAAGTAGCGCCTACTAGTGGACCACCGCACAAGAACGTCACCCGTGCAACACCGCCTCATCAAAAAAATGTGATTCCTTGTGAAGTTGAATGTAGCACCAACGTCCCCGTGCCTCCTAATAGGGCTTTGCTCCCGATAGCGACCGTCGGCTCATCCGGTCGACTTTCTAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.6

Weight (kDa)

10.98

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 280
AciI CCGC 2 cut(s) 146, 173
AclI AACGTT 1 cut(s) 23
AclWI GGATC 1 cut(s) 25
AdeI CACNNNGTG 1 cut(s) 12
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 112, 209
AhlI ACTAGT 1 cut(s) 134
AlwI GGATC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 119
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 2 cut(s) 135, 288
BfoI RGCGCY 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 106
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 106
Bsh1285I CGRYCG 2 cut(s) 264, 280
BsiEI CGRYCG 2 cut(s) 264, 280
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 209
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 2 cut(s) 146, 173
BspPI GGATC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 106
BssMI GATC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 57
BstF5I GGATG 1 cut(s) 272
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMCI CGRYCG 2 cut(s) 264, 280
BstPI GGTNACC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 272
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 54
CviJI RGCY 2 cut(s) 245, 270
CviKI_1 RGCY 2 cut(s) 245, 270
CviQI GTAC 1 cut(s) 51
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 1 cut(s) 12
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 57
EcoO65I GGTNACC 1 cut(s) 57
EcoRV GATATC 1 cut(s) 42
FaeI CATG 1 cut(s) 57
FaiI YATR 2 cut(s) 55, 71
FaqI GGGAC 1 cut(s) 209
FatI CATG 1 cut(s) 53
FblI GTMKAC 1 cut(s) 280
FokI GGATG 1 cut(s) 259
FspBI CTAG 2 cut(s) 135, 288
GlaI GCGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 131
HapII CCGG 1 cut(s) 276
HhaI GCGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 276
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 140, 281
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 253, 288
Hpy8I GTNNAC 2 cut(s) 140, 281
Hpy99I CGWCG 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 3 cut(s) 23, 156, 222
HpyCH4V TGCA 1 cut(s) 167
HpySE526I ACGT 3 cut(s) 23, 156, 222
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 2 cut(s) 119, 289
MaeI CTAG 2 cut(s) 135, 288
MaeII ACGT 3 cut(s) 23, 156, 222
MaeIII GTNAC 4 cut(s) 19, 57, 64, 157
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 124
MnlI CCTC 2 cut(s) 186, 243
MspI CCGG 1 cut(s) 276
NdeII GATC 1 cut(s) 30
NlaIII CATG 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 64, 157
PfeI GAWTC 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SalI GTCGAC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 140
SetI ASST 3 cut(s) 26, 159, 225
SinI GGWCC 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 134
SsiI CCGC 2 cut(s) 146, 173
SspMI CTAG 2 cut(s) 135, 288
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 3 cut(s) 26, 159, 225
TaqI TCGA 2 cut(s) 74, 280
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 1 cut(s) 193
TseFI GTSAC 2 cut(s) 64, 157
Tsp45I GTSAC 2 cut(s) 64, 157
TspDTI ATGAA 2 cut(s) 17, 134
TspGWI ACGGA 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 2 cut(s) 135, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.