Rmu_sc0002106.1_g000005

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002106.1
OG0000179
Physical Location & Seq
Forward (+)
34715 .. 35425
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002106.1_g000005.1.cds

Sequence Viewer

Length: 411 bp
atggctttcttcaagtgcttcaagaaagggacaatcactatcctcaaggatccagaggacactcaaaatgatggcactactctacaggtgtatccatcgtttactgggcctcaagcaatcgatgtccctccttatgactcttcagctcacatcctccactatgatcgtgttgcacccgtcatacgggctttctgtgagtattggtgtcctacaacgaataccctccacacttctagcagggaaatgtccatctccctctggtatttggacccattgtcggactattttatgatgaggttgttccagctgctgaagagctttctgcaacaagcaaagggggtcaacagagctgccgctacttgtttctcacctaccataagctctgcaaggaaggtcaagggcagaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

136

Amino Acids

15.47

Weight (kDa)

9.12

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 44, 57
AcuI CTGAAG 2 cut(s) 126, 332
AfiI CCNNNNNNNGG 2 cut(s) 183, 277
AgsI TTSAA 2 cut(s) 13, 22
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 5 cut(s) 146, 307, 318, 350, 381
AluI AGCT 5 cut(s) 146, 307, 318, 350, 381
AlwI GGATC 2 cut(s) 44, 57
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 307, 350
AspS9I GGNCC 2 cut(s) 107, 268
AsuHPI GGTGA 1 cut(s) 360
AvaII GGWCC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 74, 107
BamHI GGATCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 294, 337
BccI CCATC 3 cut(s) 65, 103, 257
BciVI GTATCC 1 cut(s) 102
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 102
BisI GCNGC 3 cut(s) 308, 351, 354
BlsI GCNGC 3 cut(s) 309, 352, 355
Bme18I GGWCC 1 cut(s) 268
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 107, 268
BmiI GGNNCC 2 cut(s) 51, 270
BmrI ACTGGG 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 29, 96
Bsa29I ATCGAT 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 277
Bse1I ACTGG 1 cut(s) 109
BseCI ATCGAT 1 cut(s) 120
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 183, 277
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 294, 337
BshFI GGCC 1 cut(s) 109
BshVI ATCGAT 1 cut(s) 120
BslFI GGGAC 2 cut(s) 43, 110
BslI CCNNNNNNNGG 2 cut(s) 183, 277
BsmFI GGGAC 2 cut(s) 43, 110
BsnI GGCC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 49, 163
BspACI CCGC 1 cut(s) 354
BspANI GGCC 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 51, 270
BspPI GGATC 2 cut(s) 44, 57
BspQI GCTCTTC 1 cut(s) 308
BsrI ACTGG 1 cut(s) 109
BssMI GATC 2 cut(s) 49, 163
Bst6I CTCTTC 2 cut(s) 145, 308
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 2 cut(s) 52, 166
BstMBI GATC 2 cut(s) 49, 163
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 294, 337
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 109
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 107, 268
ClaI ATCGAT 1 cut(s) 120
CviJI RGCY 8 cut(s) 5, 109, 146, 188, 307, 318, 350, 381
CviKI_1 RGCY 8 cut(s) 5, 109, 146, 188, 307, 318, 350, 381
DpnI GATC 2 cut(s) 51, 165
DpnII GATC 2 cut(s) 49, 163
DriI GACNNNNNGTC 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 145, 308
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 2 cut(s) 145, 308
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 2 cut(s) 126, 332
FaiI YATR 5 cut(s) 135, 162, 182, 290, 377
FaqI GGGAC 2 cut(s) 43, 110
Fnu4HI GCNGC 3 cut(s) 308, 351, 354
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 308, 351, 354
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 308, 351, 354
HaeIII GGCC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 1 cut(s) 137
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 2 cut(s) 102, 343
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 22, 53
Hpy8I GTNNAC 2 cut(s) 102, 343
HpyAV CCTTC 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 173, 325, 386
Kzo9I GATC 2 cut(s) 49, 163
LguI GCTCTTC 1 cut(s) 308
LpnPI CCDG 6 cut(s) 66, 71, 90, 223, 244, 317
Lsp1109I GCAGC 2 cut(s) 294, 337
MaeI CTAG 1 cut(s) 234
MalI GATC 2 cut(s) 51, 165
MboI GATC 2 cut(s) 49, 163
MboII GAAGA 2 cut(s) 132, 325
MflI RGATCY 1 cut(s) 49
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 49, 53, 120, 138, 164, 233, 266, 288
MspA1I CMGCKG 1 cut(s) 307
NdeII GATC 2 cut(s) 49, 163
NlaIV GGNNCC 2 cut(s) 51, 270
PciSI GCTCTTC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 309, 352, 355
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 51, 270
PspPI GGNCC 2 cut(s) 107, 268
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 307
SapI GCTCTTC 1 cut(s) 308
SatI GCNGC 3 cut(s) 308, 351, 354
Sau3AI GATC 2 cut(s) 49, 163
Sau96I GGNCC 2 cut(s) 107, 268
SchI GAGTC 1 cut(s) 131
SetI ASST 9 cut(s) 90, 148, 299, 309, 320, 352, 373, 383, 396
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 44, 111
SmoI CTYRAG 2 cut(s) 44, 111
SsiI CCGC 1 cut(s) 354
SspMI CTAG 1 cut(s) 234
TaqI TCGA 1 cut(s) 120
TauI GCSGC 1 cut(s) 356
TseI GCWGC 2 cut(s) 307, 350
VpaK11BI GGWCC 1 cut(s) 268
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.