FvH4_7g02320

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000179
Physical Location & Seq
Reverse (-)
2640797 .. 2641489
693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02320.t1

Sequence Viewer

Length: 693 bp
ATGAGGCAAAGTTCAATGGAACACACCAACAAGATCTCCCCTTCCAAGGATGTTTCTTCTGACAGAAACAATGTTGATGCCGAGCATATAATCTCTAAGATTCGCCGCAAAGCAATGTCTAAGTTGTTGGAACACATCAAGCAGATTGTTCTAAAGAATTCCATAGAGCGCCTTCCACTATTCAAAGTAGAACTTGAAAAACTGATCGATGCCTTTACGGAATATGGGATTGATCCTTCACCGTTAAAGGTCAAGGTTGACAAGCTCATGATGGATATTGCTAGTTACAATTCGATGCAGTCTGCTTGCTCCAGGATGATAGCTCCAGAGGTACAGCATCAGCGGTTGGCTGACAATAAATCTCGTCTTGACAGAGCCTTTAATCTTCAAACAGCTGAAAAATGTCAGTATGAATCGCTACGTGATTCTCTAGCCTCTCTAGAGAATCGTAGAGAAAAGCTGAAAAGAGAGCAAGAACGATTGGAGGAGCGGATAGACAAGCTTCGTATTTCCATATCAGGAAGTGGAATAAAGATAGACGAACATAAAATTGCTGTTGATCGATTGCTGAAACAGAAAGTCGAAATTTCAAAGACTCCAGTGTTGACTTCTAAAGATGCTAAAACTATGAAGAAACTGAAAGATTCACTGGAGAGTCAGTGCAATGGCTTCAAGGACTTTACTTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

231

Amino Acids

26.48

Weight (kDa)

9.44

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 490
AciI CCGC 3 cut(s) 106, 343, 490
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 157, 585
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 6 cut(s) 15, 184, 197, 389, 591, 673
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 5 cut(s) 265, 323, 395, 460, 502
AluI AGCT 5 cut(s) 265, 323, 395, 460, 502
AlwI GGATC 1 cut(s) 227
ApoI RAATTY 2 cut(s) 157, 585
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 231
BccI CCATC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 313
BfaI CTAG 3 cut(s) 282, 431, 440
BfoI RGCGCY 1 cut(s) 172
BglII AGATCT 1 cut(s) 33
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 5 cut(s) 67, 199, 285, 346, 607
BpmI CTGGAG 4 cut(s) 295, 309, 582, 671
Bsa29I ATCGAT 2 cut(s) 207, 562
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 644, 674
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 2 cut(s) 599, 654
Bse3DI GCAATG 2 cut(s) 120, 670
BseBI CCWGG 1 cut(s) 313
BseCI ATCGAT 2 cut(s) 207, 562
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 55, 321
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 2 cut(s) 120, 670
BseNI ACTGG 2 cut(s) 599, 654
BseRI GAGGAG 1 cut(s) 500
BshVI ATCGAT 2 cut(s) 207, 562
BslI CCNNNNNNNGG 1 cut(s) 46
Bsp143I GATC 4 cut(s) 33, 204, 232, 559
BspACI CCGC 3 cut(s) 106, 343, 490
BspDI ATCGAT 2 cut(s) 207, 562
BspHI TCATGA 1 cut(s) 267
BspPI GGATC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 120, 670
BsrI ACTGG 2 cut(s) 599, 654
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 33, 204, 232, 559
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 96, 120
BstF5I GGATG 2 cut(s) 55, 321
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 4 cut(s) 36, 207, 235, 562
BstMBI GATC 4 cut(s) 33, 204, 232, 559
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
Bsu15I ATCGAT 2 cut(s) 207, 562
BsuTUI ATCGAT 2 cut(s) 207, 562
BtsCI GGATG 2 cut(s) 55, 321
BtsIMutI CAGTG 3 cut(s) 606, 647, 665
Cac8I GCNNGC 1 cut(s) 307
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 171
ClaI ATCGAT 2 cut(s) 207, 562
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 268
CviJI RGCY 9 cut(s) 265, 323, 350, 377, 395, 434, 460, 502, 669
CviKI_1 RGCY 9 cut(s) 265, 323, 350, 377, 395, 434, 460, 502, 669
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 2 cut(s) 96, 120
DpnI GATC 4 cut(s) 35, 206, 234, 561
DpnII GATC 4 cut(s) 33, 204, 232, 559
Eco130I CCWWGG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 271
FaiI YATR 9 cut(s) 87, 89, 164, 225, 269, 411, 515, 546, 629
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 2 cut(s) 62, 328
Fsp4HI GCNGC 1 cut(s) 106
FspBI CTAG 3 cut(s) 282, 431, 440
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 4 cut(s) 295, 309, 582, 671
HaeII RGCGCY 1 cut(s) 172
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 2 cut(s) 259, 606
HindII GTYRAC 2 cut(s) 259, 606
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 7 cut(s) 100, 413, 425, 445, 595, 644, 655
HphI GGTGA 1 cut(s) 231
Hpy166II GTNNAC 2 cut(s) 259, 606
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 5 cut(s) 268, 326, 368, 440, 519
Hpy8I GTNNAC 2 cut(s) 259, 606
HpyAV CCTTC 3 cut(s) 51, 182, 246
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 298, 663
HpyF3I CTNAG 2 cut(s) 96, 120
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 4 cut(s) 33, 204, 232, 559
LmnI GCTCC 3 cut(s) 314, 328, 487
LpnPI CCDG 6 cut(s) 298, 325, 339, 504, 612, 635
LweI GCATC 5 cut(s) 67, 199, 285, 346, 607
MaeI CTAG 3 cut(s) 282, 431, 440
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 284
MalI GATC 4 cut(s) 35, 206, 234, 561
MbiI CCGCTC 1 cut(s) 490
MboI GATC 4 cut(s) 33, 204, 232, 559
MboII GAAGA 3 cut(s) 48, 377, 643
MflI RGATCY 1 cut(s) 33
MluCI AATT 4 cut(s) 157, 289, 549, 585
MlyI GAGTC 2 cut(s) 589, 664
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 3 cut(s) 322, 445, 478
MseI TTAA 2 cut(s) 245, 381
MspA1I CMGCKG 2 cut(s) 343, 395
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
NdeII GATC 4 cut(s) 33, 204, 232, 559
NlaIII CATG 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 106
PagI TCATGA 1 cut(s) 267
PfeI GAWTC 5 cut(s) 100, 413, 425, 445, 644
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 2 cut(s) 589, 663
PpsI GAGTC 2 cut(s) 589, 663
Ppu21I YACGTR 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 245, 381
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 4 cut(s) 33, 204, 232, 559
SchI GAGTC 2 cut(s) 589, 664
ScrFI CCNGG 1 cut(s) 313
SetI ASST 9 cut(s) 252, 258, 267, 325, 333, 397, 424, 462, 504
SfaNI GCATC 5 cut(s) 67, 199, 285, 346, 607
Sse9I AATT 4 cut(s) 157, 289, 549, 585
SsiI CCGC 3 cut(s) 106, 343, 490
SspMI CTAG 3 cut(s) 282, 431, 440
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 243
TaiI ACGT 1 cut(s) 424
TaqI TCGA 4 cut(s) 207, 293, 562, 582
TasI AATT 4 cut(s) 157, 289, 549, 585
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 5 cut(s) 100, 413, 425, 445, 644
Tru1I TTAA 2 cut(s) 245, 381
Tru9I TTAA 2 cut(s) 245, 381
TscAI CASTG 3 cut(s) 606, 654, 665
TspDTI ATGAA 2 cut(s) 426, 644
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 606, 654, 665
XapI RAATTY 2 cut(s) 157, 585
XbaI TCTAGA 1 cut(s) 439
XspI CTAG 3 cut(s) 282, 431, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.