Rroxscaffold_5G00333920

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000179
Physical Location & Seq
Reverse (-)
1245718 .. 1247742
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333920.1

Sequence Viewer

Length: 798 bp
ATGGTGCCCGTAGAACTCCACCGTAGCATTATAATCCTCAATTCGAAAACAGAGAGGGATCCATTCTTCACCAAGGTCTTTCTCTTCCATGATCGTTTCCAGCTCCACGGGTTCTTGGGTCTCTTCGAAACCGACTTCTCCATCCGGGTTTCCTCCAATTGGGTTCTTGAAGTGTCGCTTAGACCTCGTTCGGGATTTCGGAAACAGAGTCACTCTGTTTCGTTTCTTGCTCTTCTCGGAGTTCTTGCGCTTTTGGGCTTGAAGAGAAGGGGAATTCTGCGATGGATTTGGCGTCCTCATTGGTTTTGGCGACAATTGAAGAACGCAGACGACCTAAATGCTTGGATTTTTCCACTTTTTGATTGTGGAAAAATCCTCTCAAAGCGCTTAGGCTTTGCGTGTTTTGTCGACGTCAAAGAGAAGAACGTGAACGTCCTAAACGCTTGGATTCCTCCACCTTTGCTCGTGGGTCCACCAAAAGCGGTTAGGCTTTGCGTATTTGGTGATTCACGAAGAGAAGAACGCGGATGTCCTAAACGCTTGGATTCCTCAACCTTTGTGTGTGGTAGGGTCCACCAAAAGCGGTTAGGCTTCGCGTACGTCGTCGGCACTCGCGACCGCGCTTCCCGTCCTTTTGTGACCATGGCTTTCTTCAAGTGCTTCAAGAAAGGGACGGTCACCATCCTCGAGGATCCGGAGGACACTCAAGGTGATGGCACTACTGCGGTGCATCCATCGTTGATCGGGCCTCAAGCAATCGATATCCCTCCTTATGACCCTTCGACTCACATCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

265

Amino Acids

30.35

Weight (kDa)

9.9

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AatII GACGTC 1 cut(s) 414
AbsI CCTCGAGG 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 408
AccII CGCG 4 cut(s) 525, 596, 615, 621
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 5 cut(s) 482, 525, 583, 619, 725
AclWI GGATC 4 cut(s) 53, 66, 686, 699
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 2 cut(s) 292, 411
AfaI GTAC 1 cut(s) 599
AfeI AGCGCT 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 159, 191
AgsI TTSAA 5 cut(s) 170, 262, 319, 655, 664
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 4 cut(s) 53, 66, 686, 699
Ama87I CYCGRG 1 cut(s) 686
Aor13HI TCCGGA 1 cut(s) 694
Aor51HI AGCGCT 1 cut(s) 386
AoxI GGCC 1 cut(s) 746
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 3 cut(s) 250, 387, 623
AspS9I GGNCC 3 cut(s) 470, 571, 746
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 4 cut(s) 61, 515, 670, 722
AsuII TTCGAA 2 cut(s) 44, 126
AvaI CYCGRG 1 cut(s) 686
AvaII GGWCC 2 cut(s) 470, 571
BaeGI GKGCMC 1 cut(s) 9
BamHI GGATCC 2 cut(s) 58, 691
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 464
BccI CCATC 5 cut(s) 149, 276, 689, 707, 742
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 796
BfoI RGCGCY 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 470, 571
BmeT110I CYCGRG 1 cut(s) 686
BmgT120I GGNCC 3 cut(s) 470, 571, 746
BmiI GGNNCC 5 cut(s) 6, 60, 471, 572, 693
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 739
Bpu10I CCTNAGC 1 cut(s) 388
Bpu14I TTCGAA 2 cut(s) 44, 126
BpuEI CTTGAG 2 cut(s) 690, 735
BpuMI CCSGG 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 759
BsaHI GRCGYC 2 cut(s) 292, 411
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 72, 106, 642
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 191
BseAI TCCGGA 1 cut(s) 694
BseCI ATCGAT 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 72, 106, 642
BseGI GGATG 4 cut(s) 141, 533, 681, 730
BseLI CCNNNNNNNGG 2 cut(s) 159, 191
BseSI GKGCMC 1 cut(s) 9
Bsh1236I CGCG 4 cut(s) 525, 596, 615, 621
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 1 cut(s) 748
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 619
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 2 cut(s) 145, 695
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 2 cut(s) 159, 191
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 1 cut(s) 748
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 686
Bsp119I TTCGAA 2 cut(s) 44, 126
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 4 cut(s) 58, 91, 691, 741
Bsp19I CCATGG 1 cut(s) 642
Bsp68I TCGCGA 1 cut(s) 615
BspACI CCGC 5 cut(s) 482, 525, 583, 619, 725
BspANI GGCC 1 cut(s) 748
BspDI ATCGAT 1 cut(s) 759
BspEI TCCGGA 1 cut(s) 694
BspFNI CGCG 4 cut(s) 525, 596, 615, 621
BspLI GGNNCC 5 cut(s) 6, 60, 471, 572, 693
BspPI GGATC 4 cut(s) 53, 66, 686, 699
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 2 cut(s) 44, 126
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 72, 106, 642
BssMI GATC 4 cut(s) 58, 91, 691, 741
BssNI GRCGYC 2 cut(s) 292, 411
BssSI CACGAG 1 cut(s) 464
BssT1I CCWWGG 2 cut(s) 72, 642
Bst2BI CACGAG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 23, 676
Bst6I CTCTTC 5 cut(s) 89, 128, 237, 257, 508
BstACI GRCGYC 2 cut(s) 292, 411
BstBI TTCGAA 2 cut(s) 44, 126
BstDEI CTNAG 2 cut(s) 179, 388
BstDSI CCRYGG 2 cut(s) 106, 642
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 4 cut(s) 141, 533, 681, 730
BstFNI CGCG 4 cut(s) 525, 596, 615, 621
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 250, 387, 623
BstKTI GATC 4 cut(s) 61, 94, 694, 744
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 4 cut(s) 58, 91, 691, 741
BstMCI CGRYCG 1 cut(s) 619
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 4 cut(s) 525, 596, 615, 621
BstX2I RGATCY 2 cut(s) 58, 691
BstYI RGATCY 2 cut(s) 58, 691
Bsu15I ATCGAT 1 cut(s) 759
BsuRI GGCC 1 cut(s) 748
BsuTUI ATCGAT 1 cut(s) 759
BtgI CCRYGG 2 cut(s) 106, 642
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 4 cut(s) 141, 533, 681, 730
BtuMI TCGCGA 1 cut(s) 615
CfoI GCGC 3 cut(s) 250, 387, 623
Cfr13I GGNCC 3 cut(s) 470, 571, 746
ClaI ATCGAT 1 cut(s) 759
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 598
CviAII CATG 2 cut(s) 89, 643
CviJI RGCY 7 cut(s) 103, 258, 393, 490, 591, 647, 748
CviKI_1 RGCY 7 cut(s) 103, 258, 393, 490, 591, 647, 748
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 2 cut(s) 179, 388
DpnI GATC 4 cut(s) 60, 93, 693, 743
DpnII GATC 4 cut(s) 58, 91, 691, 741
Eam1104I CTCTTC 5 cut(s) 89, 128, 237, 257, 508
EarI CTCTTC 5 cut(s) 89, 128, 237, 257, 508
Eco130I CCWWGG 2 cut(s) 72, 642
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 763
Eco47I GGWCC 2 cut(s) 470, 571
Eco47III AGCGCT 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 686
Eco91I GGTNACC 1 cut(s) 676
EcoO65I GGTNACC 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 273
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 72, 642
ErhI CCWWGG 2 cut(s) 72, 642
FaeI CATG 2 cut(s) 92, 646
FaiI YATR 4 cut(s) 32, 90, 644, 774
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 1 cut(s) 685
FatI CATG 2 cut(s) 88, 642
FblI GTMKAC 1 cut(s) 408
FokI GGATG 4 cut(s) 128, 540, 668, 717
FspBI CTAG 1 cut(s) 796
GlaI GCGC 3 cut(s) 249, 386, 622
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 1 cut(s) 748
HapII CCGG 2 cut(s) 145, 695
HgaI GACGC 1 cut(s) 281
HhaI GCGC 3 cut(s) 250, 387, 623
Hin1I GRCGYC 2 cut(s) 292, 411
Hin1II CATG 2 cut(s) 92, 646
Hin6I GCGC 3 cut(s) 248, 385, 621
HinP1I GCGC 3 cut(s) 248, 385, 621
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 5 cut(s) 208, 448, 506, 545, 784
HpaII CCGG 2 cut(s) 145, 695
HphI GGTGA 4 cut(s) 61, 515, 670, 722
Hpy166II GTNNAC 4 cut(s) 409, 430, 473, 574
Hpy188I TCNGA 2 cut(s) 201, 239
Hpy188III TCNNGA 6 cut(s) 167, 192, 510, 614, 664, 695
Hpy8I GTNNAC 4 cut(s) 409, 430, 473, 574
Hpy99I CGWCG 3 cut(s) 413, 605, 608
HpyAV CCTTC 2 cut(s) 261, 789
HpyCH4III ACNGT 2 cut(s) 23, 676
HpyCH4IV ACGT 4 cut(s) 411, 426, 432, 600
HpyCH4V TGCA 1 cut(s) 730
HpyF3I CTNAG 2 cut(s) 179, 388
HpySE526I ACGT 4 cut(s) 411, 426, 432, 600
Hsp92I GRCGYC 2 cut(s) 292, 411
Hsp92II CATG 2 cut(s) 92, 646
HspAI GCGC 3 cut(s) 248, 385, 621
Kpn2I TCCGGA 1 cut(s) 694
Kzo9I GATC 4 cut(s) 58, 91, 691, 741
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 3 cut(s) 113, 158, 708
LweI GCATC 1 cut(s) 739
MaeI CTAG 1 cut(s) 796
MaeII ACGT 4 cut(s) 411, 426, 432, 600
MaeIII GTNAC 3 cut(s) 209, 637, 676
MalI GATC 4 cut(s) 60, 93, 693, 743
MboI GATC 4 cut(s) 58, 91, 691, 741
MfeI CAATTG 2 cut(s) 157, 314
MflI RGATCY 2 cut(s) 58, 691
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 40, 157, 273, 314
MlyI GAGTC 2 cut(s) 217, 778
MroI TCCGGA 1 cut(s) 694
MspI CCGG 2 cut(s) 145, 695
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 2 cut(s) 157, 314
MvnI CGCG 4 cut(s) 525, 596, 615, 621
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 642
NdeII GATC 4 cut(s) 58, 91, 691, 741
NlaIII CATG 2 cut(s) 92, 646
NlaIV GGNNCC 5 cut(s) 6, 60, 471, 572, 693
NmuCI GTSAC 3 cut(s) 209, 637, 676
NruI TCGCGA 1 cut(s) 615
NspV TTCGAA 2 cut(s) 44, 126
PaeR7I CTCGAG 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 600, 612
PfeI GAWTC 3 cut(s) 448, 506, 545
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 2 cut(s) 216, 778
PpsI GAGTC 2 cut(s) 216, 778
PsiI TTATAA 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 676
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 5 cut(s) 6, 60, 471, 572, 693
PspPI GGNCC 3 cut(s) 470, 571, 746
PspXI VCTCGAGB 1 cut(s) 686
PsuI RGATCY 2 cut(s) 58, 691
RruI TCGCGA 1 cut(s) 615
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
SalI GTCGAC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 237
Sau3AI GATC 4 cut(s) 58, 91, 691, 741
Sau96I GGNCC 3 cut(s) 470, 571, 746
SchI GAGTC 2 cut(s) 217, 778
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 739
Sfr274I CTCGAG 1 cut(s) 686
SfuI TTCGAA 2 cut(s) 44, 126
SinI GGWCC 2 cut(s) 470, 571
SlaI CTCGAG 1 cut(s) 686
SmlI CTYRAG 3 cut(s) 686, 705, 750
SmoI CTYRAG 3 cut(s) 686, 705, 750
Sse9I AATT 4 cut(s) 40, 157, 273, 314
SsiI CCGC 5 cut(s) 482, 525, 583, 619, 725
SspMI CTAG 1 cut(s) 796
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 72, 642
TaaI ACNGT 2 cut(s) 23, 676
TaiI ACGT 4 cut(s) 414, 429, 435, 603
TaqI TCGA 6 cut(s) 44, 126, 408, 687, 759, 782
TasI AATT 4 cut(s) 40, 157, 273, 314
TfiI GAWTC 3 cut(s) 448, 506, 545
TseFI GTSAC 3 cut(s) 209, 637, 676
Tsp45I GTSAC 3 cut(s) 209, 637, 676
VpaK11BI GGWCC 2 cut(s) 470, 571
XapI RAATTY 1 cut(s) 273
XhoI CTCGAG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 1 cut(s) 796
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.