Rmu_sc0012883.1_g000001

Galactose oxidase, central domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012883.1
OG0000179
Physical Location & Seq
Reverse (-)
2 .. 1027
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012883.1_g000001.1.cds

Sequence Viewer

Length: 847 bp
atgattgcttgtgaagtcgaatgtagcactaacgtccctgtgcttcctgatagggcttcgttcccagataaggaccatcaggctcatccagtcgacattctagaagatgatggagactctttagattctcacgccgccttcatccgtccacttaagctgaaaagacctgtcatcaaagaaagaaggcgtagtggaagcagcggtagcaatgatagtgaagtgcactttaagcgtcgaaaaactgacaccagtcttggccctacttattgtgatcccaatgctgagttcactctgaatactgactttcttggtgacatctcaacttcttcgcaaccgatgctgcagcgaaatgagggcgcagagattgatggtcgttcactttggggaaacgatgacgactctttagatcctatacgtgttccttctgcagcggaacttgaggcttacgctttacccacgaaaggaaaatccaatgcaaagaatgactcacagcaaattgaccctacaggtccacttaccatggtgcatcctcctaagcctctgaacaccatagccttttctgaggcctctcttggtggagctgctattatagatgccagccaaagacttcgtgatattcgtcaacaagctgctactgcagtttgtgaacaaattgaagatatgataatgaagcactcctccaagaccattctttccagcaagggggaacttgacaagctgatagctgagcttagccattatgggattgatccttcacccgtaagggaaaaagttgaaggattgttgaatagtgctgaccaatacaacttggcacgactttcttgttcacgcaaggctactccaggca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04212 ko05168 map04212 map05168
Pfam Domains
Protein Families
Kelch_3 Kelch_4 Kelch_5

Protein Analysis

282

Amino Acids

30.73

Weight (kDa)

5.23

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AciI CCGC 3 cut(s) 135, 201, 431
AclWI GGATC 3 cut(s) 266, 401, 743
AfiI CCNNNNNNNGG 3 cut(s) 70, 461, 702
AflII CTTAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 3 cut(s) 656, 776, 787
AjnI CCWGG 1 cut(s) 841
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 6 cut(s) 157, 581, 629, 718, 725, 730
AluI AGCT 6 cut(s) 157, 581, 629, 718, 725, 730
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 3 cut(s) 266, 401, 743
AoxI GGCC 2 cut(s) 256, 564
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 6 cut(s) 198, 340, 343, 428, 581, 629
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 3 cut(s) 73, 257, 509
AsuHPI GGTGA 2 cut(s) 323, 747
AvaII GGWCC 2 cut(s) 73, 509
BaeGI GKGCMC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 6 cut(s) 210, 327, 355, 440, 568, 616
BccI CCATC 3 cut(s) 84, 104, 362
BciT130I CCWGG 1 cut(s) 843
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 4 cut(s) 341, 426, 504, 636
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 7 cut(s) 135, 199, 341, 344, 429, 582, 630
BlpI GCTNAGC 2 cut(s) 726, 731
BlsI GCNGC 7 cut(s) 136, 200, 342, 345, 430, 583, 631
Bme1390I CCNGG 1 cut(s) 843
Bme18I GGWCC 2 cut(s) 73, 509
BmgT120I GGNCC 3 cut(s) 73, 257, 509
BmrFI CCNGG 1 cut(s) 843
BmsI GCATC 3 cut(s) 327, 535, 583
BoxI GACNNNNGTC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 2 cut(s) 726, 731
BpuEI CTTGAG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 461, 702
Bse1I ACTGG 2 cut(s) 89, 249
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 3 cut(s) 85, 141, 526
BseLI CCNNNNNNNGG 3 cut(s) 70, 461, 702
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 273, 552, 717
BseNI ACTGG 2 cut(s) 89, 249
BseRI GAGGAG 1 cut(s) 667
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 6 cut(s) 210, 327, 355, 440, 568, 616
BshFI GGCC 2 cut(s) 258, 566
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 70, 461, 702
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 258, 566
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 271, 406, 748
Bsp1720I GCTNAGC 2 cut(s) 726, 731
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 3 cut(s) 135, 201, 431
BspANI GGCC 2 cut(s) 258, 566
BspCNI CTCAG 3 cut(s) 274, 553, 718
BspMAI CTGCAG 3 cut(s) 345, 430, 640
BspPI GGATC 3 cut(s) 266, 401, 743
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 2 cut(s) 89, 249
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 271, 406, 748
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 843
BstAFI CTTAAG 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 5 cut(s) 282, 534, 561, 726, 731
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 3 cut(s) 85, 141, 526
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 274, 409, 751
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 271, 406, 748
BstMWI GCNNNNNNNGC 4 cut(s) 204, 229, 337, 635
BstNI CCWGG 1 cut(s) 843
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 841
BstSFI CTRYAG 4 cut(s) 341, 426, 504, 636
BstSLI GKGCMC 1 cut(s) 225
BstV1I GCAGC 6 cut(s) 210, 327, 355, 440, 568, 616
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 2 cut(s) 258, 566
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 3 cut(s) 85, 141, 526
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 73, 257, 509
CseI GACGC 1 cut(s) 221
CviAII CATG 1 cut(s) 520
DdeI CTNAG 5 cut(s) 282, 534, 561, 726, 731
DpnI GATC 3 cut(s) 273, 408, 750
DpnII GATC 3 cut(s) 271, 406, 748
Eco130I CCWWGG 1 cut(s) 519
Eco147I AGGCCT 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 73, 509
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 1 cut(s) 523
FaiI YATR 6 cut(s) 413, 521, 551, 590, 662, 741
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 519
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 7 cut(s) 135, 199, 341, 344, 429, 582, 630
FokI GGATG 3 cut(s) 72, 128, 513
Fsp4HI GCNGC 7 cut(s) 135, 199, 341, 344, 429, 582, 630
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 358
GluI GCNGC 7 cut(s) 135, 199, 341, 344, 429, 582, 630
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 2 cut(s) 258, 566
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 359
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 2 cut(s) 94, 623
HindII GTYRAC 2 cut(s) 94, 623
HinfI GANTC 4 cut(s) 116, 125, 398, 485
HphI GGTGA 2 cut(s) 323, 747
Hpy166II GTNNAC 9 cut(s) 94, 149, 223, 288, 377, 512, 623, 647, 827
Hpy188I TCNGA 3 cut(s) 294, 543, 562
Hpy188III TCNNGA 3 cut(s) 47, 101, 611
Hpy8I GTNNAC 9 cut(s) 94, 149, 223, 288, 377, 512, 623, 647, 827
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 5 cut(s) 148, 177, 432, 762, 770
HpyCH4IV ACGT 2 cut(s) 33, 415
HpyCH4V TGCA 6 cut(s) 223, 343, 428, 476, 526, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 204, 229, 337, 635
HpyF3I CTNAG 5 cut(s) 282, 534, 561, 726, 731
HpySE526I ACGT 2 cut(s) 33, 415
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 271, 406, 748
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 6 cut(s) 210, 327, 355, 440, 568, 616
LweI GCATC 3 cut(s) 327, 535, 583
MaeI CTAG 1 cut(s) 101
MaeII ACGT 2 cut(s) 33, 415
MaeIII GTNAC 1 cut(s) 311
MalI GATC 3 cut(s) 273, 408, 750
MboI GATC 3 cut(s) 271, 406, 748
MboII GAAGA 3 cut(s) 116, 318, 668
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 2 cut(s) 495, 651
MlyI GAGTC 3 cut(s) 110, 392, 479
MnlI CCTC 7 cut(s) 346, 433, 540, 549, 556, 577, 688
MseI TTAA 2 cut(s) 153, 228
MspA1I CMGCKG 2 cut(s) 201, 431
MspCI CTTAAG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 843
MwoI GCNNNNNNNGC 4 cut(s) 204, 229, 337, 635
NcoI CCATGG 1 cut(s) 519
NdeII GATC 3 cut(s) 271, 406, 748
NlaIII CATG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 311
PceI AGGCCT 1 cut(s) 566
PcsI WCGNNNNNNNCGW 1 cut(s) 616
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 136, 200, 342, 345, 430, 583, 631
PleI GAGTC 3 cut(s) 110, 392, 479
PpsI GAGTC 3 cut(s) 110, 392, 479
Ppu21I YACGTR 1 cut(s) 416
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 841
PspGI CCWGG 1 cut(s) 841
PspPI GGNCC 3 cut(s) 73, 257, 509
PstI CTGCAG 3 cut(s) 345, 430, 640
PsuI RGATCY 1 cut(s) 406
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 153, 228
SatI GCNGC 7 cut(s) 135, 199, 341, 344, 429, 582, 630
Sau3AI GATC 3 cut(s) 271, 406, 748
Sau96I GGNCC 3 cut(s) 73, 257, 509
SchI GAGTC 3 cut(s) 110, 392, 479
ScrFI CCNGG 1 cut(s) 843
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 3 cut(s) 327, 535, 583
SfcI CTRYAG 4 cut(s) 341, 426, 504, 636
SinI GGWCC 2 cut(s) 73, 509
SmlI CTYRAG 2 cut(s) 152, 437
SmoI CTYRAG 2 cut(s) 152, 437
Sse9I AATT 2 cut(s) 495, 651
SseBI AGGCCT 1 cut(s) 566
SsiI CCGC 3 cut(s) 135, 201, 431
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 1 cut(s) 841
StyI CCWWGG 1 cut(s) 519
TaiI ACGT 2 cut(s) 36, 418
TaqI TCGA 3 cut(s) 18, 93, 235
TasI AATT 2 cut(s) 495, 651
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 153, 228
Tru9I TTAA 2 cut(s) 153, 228
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 6 cut(s) 198, 340, 343, 428, 581, 629
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 130, 683
TspGWI ACGGA 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 73, 509
XbaI TCTAGA 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.