pycom08g13640

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000179
Physical Location & Seq
Reverse (-)
12469543 .. 12470534
992 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13640.3

Sequence Viewer

Length: 912 bp
ATGCATATTAAGTCGTGGTCTTCTGAAGTATCTTGGGAGGTGGCAAACTTTGTTCGATCAAATACGGAGAAGAAGGCATGCACCCTGAGGATTCTTATCTTGAACCCTTCGCACCATGCTCGTGACAATCATCCAACTTCGTTTAAGCTTCTTGGTGGTCACATCCGCAGCGGAGCTATGGCTTGGAATGATGTCTTGTCGACTACCGGAGAAGCTGTTTTTGTTGAGTCTTATTGGGAGTGGCTTGAAGATGTCTTGGGCCGATCTAAACATGTGCTTACTATTCGACAAACACTGAAGATCGATCTCCATCATTCCGTCCTTCATGCGTTCCTCGAGCATTGGTGTTCAGCGACTAACACGCTTCATACAGCTCAAGGAGAGATATCAGTTTCACTTTGGGATCTCCACAAGATAGGGGGCTTGCCAATCCAAGGTAAGTTTTATGACGAGGTCGTTCCTAGTGCGGAGGAACTTTCTCTCTGCAATAGCCGAGGATTGCCTGCGAGTTGTCGCTGTTTATTTTGGGCATATCACAAGCTTTCCCAAGATGCTCGAGGTAAATCAGGCGTGAAGATTTCTTCATGGATCCGCTTCTGGTATTGGGAGGACACAAGGTACAAGAAGTCCTTGAAGAAAAGAGGTTGCAACAAAACCACTAAGCCAAAGGGATACCCATATCCGTCTGGTGTTATTGGTTCAGCTAGGCGACGTTCCCCTGCCGAGTTGAGAGCGTTTGAGGACCTTGGCATAGCATCAGAGCATGTGGAAGAATCTTACCTAGCTGCTTTCTTAGCTTGTTGGCTTTGTAAGTTTGTTTGTCCAACCGGCGACGTCAACTTTGTTCGTCCTGGGGTTTTCAAAGTTGCTAGCAAGATGGCTGCAGTTATCACAGCTTGGGTGTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

304

Amino Acids

34.29

Weight (kDa)

9.16

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 837
AccI GTMKAC 1 cut(s) 200
AciI CCGC 4 cut(s) 166, 171, 467, 592
AclWI GGATC 3 cut(s) 411, 583, 596
AcuI CTGAAG 2 cut(s) 45, 317
AcyI GRCGYC 1 cut(s) 834
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 4 cut(s) 103, 248, 634, 862
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 9 cut(s) 148, 176, 215, 374, 541, 704, 785, 797, 896
AluI AGCT 9 cut(s) 148, 176, 215, 374, 541, 704, 785, 797, 896
AlwI GGATC 3 cut(s) 411, 583, 596
Ama87I CYCGRG 2 cut(s) 335, 555
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 168, 785, 881
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
AspS9I GGNCC 2 cut(s) 259, 742
AsuNHI GCTAGC 1 cut(s) 869
AvaI CYCGRG 2 cut(s) 335, 555
AvaII GGWCC 1 cut(s) 742
AxyI CCTNAGG 1 cut(s) 86
BamHI GGATCC 1 cut(s) 588
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 180, 772, 868
BccI CCATC 2 cut(s) 318, 871
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 852
BciVI GTATCC 1 cut(s) 665
BfaI CTAG 4 cut(s) 462, 705, 782, 870
BfmI CTRYAG 1 cut(s) 882
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 3 cut(s) 169, 786, 882
BlsI GCNGC 3 cut(s) 170, 787, 883
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 335, 555
BmgT120I GGNCC 2 cut(s) 259, 742
BmiI GGNNCC 1 cut(s) 590
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 2 cut(s) 541, 764
BmtI GCTAGC 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 2 cut(s) 95, 309
BsaHI GRCGYC 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 433, 493, 745, 851
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse118I RCCGGY 1 cut(s) 827
Bse21I CCTNAGG 1 cut(s) 86
Bse8I GATNNNNATC 2 cut(s) 95, 309
BseBI CCWGG 1 cut(s) 852
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 4 cut(s) 433, 493, 745, 851
BseGI GGATG 2 cut(s) 130, 162
BseJI GATNNNNATC 2 cut(s) 95, 309
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 180, 772, 868
BshFI GGCC 1 cut(s) 261
BshVI ATCGAT 1 cut(s) 303
BsiHKCI CYCGRG 2 cut(s) 335, 555
BsiSI CCGG 2 cut(s) 207, 828
BslI CCNNNNNNNGG 1 cut(s) 434
BsnI GGCC 1 cut(s) 261
BsoBI CYCGRG 2 cut(s) 335, 555
Bsp143I GATC 6 cut(s) 56, 263, 300, 304, 403, 588
BspACI CCGC 4 cut(s) 166, 171, 467, 592
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 886
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 3 cut(s) 411, 583, 596
BsrFI RCCGGY 1 cut(s) 827
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 4 cut(s) 433, 493, 745, 851
BssMI GATC 6 cut(s) 56, 263, 300, 304, 403, 588
BssNI GRCGYC 1 cut(s) 834
BssSI CACGAG 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 433, 745
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 834
BstC8I GCNNGC 4 cut(s) 79, 425, 504, 871
BstDEI CTNAG 3 cut(s) 86, 660, 793
BstF5I GGATG 2 cut(s) 130, 162
BstKTI GATC 6 cut(s) 59, 266, 303, 307, 406, 591
BstMBI GATC 6 cut(s) 56, 263, 300, 304, 403, 588
BstMWI GCNNNNNNNGC 1 cut(s) 794
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 3 cut(s) 81, 275, 767
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 1 cut(s) 882
BstV1I GCAGC 3 cut(s) 180, 772, 868
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 403, 588
BstYI RGATCY 2 cut(s) 403, 588
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 86
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 130, 162
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 4 cut(s) 79, 425, 504, 871
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 2 cut(s) 259, 742
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 619
CviAII CATG 6 cut(s) 78, 116, 272, 326, 585, 764
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 3 cut(s) 86, 660, 793
DpnI GATC 6 cut(s) 58, 265, 302, 306, 405, 590
DpnII GATC 6 cut(s) 56, 263, 300, 304, 403, 588
Eco130I CCWWGG 2 cut(s) 433, 745
Eco32I GATATC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 2 cut(s) 45, 317
Eco81I CCTNAGG 1 cut(s) 86
Eco88I CYCGRG 2 cut(s) 335, 555
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 387
EcoT14I CCWWGG 2 cut(s) 433, 745
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 433, 745
FaeI CATG 6 cut(s) 81, 119, 275, 329, 588, 767
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FatI CATG 6 cut(s) 77, 115, 271, 325, 584, 763
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 169, 786, 882
FokI GGATG 2 cut(s) 117, 149
Fsp4HI GCNGC 3 cut(s) 169, 786, 882
FspBI CTAG 4 cut(s) 462, 705, 782, 870
GluI GCNGC 3 cut(s) 169, 786, 882
HaeIII GGCC 1 cut(s) 261
HapII CCGG 2 cut(s) 207, 828
Hin1I GRCGYC 1 cut(s) 834
Hin1II CATG 6 cut(s) 81, 119, 275, 329, 588, 767
HincII GTYRAC 2 cut(s) 201, 838
HindII GTYRAC 2 cut(s) 201, 838
HindIII AAGCTT 2 cut(s) 146, 539
HinfI GANTC 3 cut(s) 91, 227, 773
HpaII CCGG 2 cut(s) 207, 828
Hpy166II GTNNAC 2 cut(s) 201, 838
Hpy188I TCNGA 2 cut(s) 25, 760
Hpy188III TCNNGA 2 cut(s) 100, 122
Hpy8I GTNNAC 2 cut(s) 201, 838
Hpy99I CGWCG 2 cut(s) 714, 836
HpyAV CCTTC 3 cut(s) 67, 117, 332
HpyCH4IV ACGT 2 cut(s) 712, 834
HpyCH4V TGCA 5 cut(s) 4, 81, 486, 648, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 794
HpyF3I CTNAG 3 cut(s) 86, 660, 793
HpySE526I ACGT 2 cut(s) 712, 834
Hsp92I GRCGYC 1 cut(s) 834
Hsp92II CATG 6 cut(s) 81, 119, 275, 329, 588, 767
Kzo9I GATC 6 cut(s) 56, 263, 300, 304, 403, 588
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 3 cut(s) 180, 772, 868
LweI GCATC 2 cut(s) 541, 764
MaeI CTAG 4 cut(s) 462, 705, 782, 870
MaeII ACGT 2 cut(s) 712, 834
MaeIII GTNAC 2 cut(s) 122, 158
MalI GATC 6 cut(s) 58, 265, 302, 306, 405, 590
MboI GATC 6 cut(s) 56, 263, 300, 304, 403, 588
MboII GAAGA 8 cut(s) 12, 82, 260, 310, 573, 586, 646, 782
MflI RGATCY 2 cut(s) 403, 588
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 158, 848
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 9, 144, 910
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 2 cut(s) 207, 828
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 1 cut(s) 794
NdeII GATC 6 cut(s) 56, 263, 300, 304, 403, 588
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 6 cut(s) 81, 119, 275, 329, 588, 767
NlaIV GGNNCC 1 cut(s) 590
NmeAIII GCCGAG 2 cut(s) 518, 748
NmuCI GTSAC 2 cut(s) 122, 158
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 81, 275, 767
PaeI GCATGC 1 cut(s) 81
PaeR7I CTCGAG 2 cut(s) 335, 555
PciI ACATGT 1 cut(s) 271
PfeI GAWTC 2 cut(s) 91, 773
PflFI GACNNNGTC 1 cut(s) 452
PkrI GCNGC 3 cut(s) 170, 787, 883
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 742
PscI ACATGT 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 2 cut(s) 259, 742
PspPPI RGGWCCY 1 cut(s) 742
PspXI VCTCGAGB 2 cut(s) 335, 555
PstI CTGCAG 1 cut(s) 886
PsuI RGATCY 2 cut(s) 403, 588
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 120
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 9, 144, 910
SatI GCNGC 3 cut(s) 169, 786, 882
Sau3AI GATC 6 cut(s) 56, 263, 300, 304, 403, 588
Sau96I GGNCC 2 cut(s) 259, 742
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 852
SfaNI GCATC 2 cut(s) 541, 764
SfcI CTRYAG 1 cut(s) 882
Sfr274I CTCGAG 2 cut(s) 335, 555
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 2 cut(s) 335, 555
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 3 cut(s) 335, 375, 555
SmoI CTYRAG 3 cut(s) 335, 375, 555
SphI GCATGC 1 cut(s) 81
SsiI CCGC 4 cut(s) 166, 171, 467, 592
SspMI CTAG 4 cut(s) 462, 705, 782, 870
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 2 cut(s) 433, 745
TaiI ACGT 2 cut(s) 715, 837
TaqI TCGA 6 cut(s) 55, 200, 286, 303, 336, 556
TfiI GAWTC 2 cut(s) 91, 773
Tru1I TTAA 3 cut(s) 9, 144, 910
Tru9I TTAA 3 cut(s) 9, 144, 910
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 2 cut(s) 122, 158
TseI GCWGC 3 cut(s) 168, 785, 881
Tsp45I GTSAC 2 cut(s) 122, 158
TspDTI ATGAA 3 cut(s) 314, 356, 573
TspGWI ACGGA 3 cut(s) 80, 307, 672
TspRI CASTG 1 cut(s) 300
Tth111I GACNNNGTC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 742
XceI RCATGY 3 cut(s) 81, 275, 767
XhoI CTCGAG 2 cut(s) 335, 555
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 4 cut(s) 462, 705, 782, 870
ZraI GACGTC 1 cut(s) 835
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.