Rmu_sc0025334.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025334.1
OG0000179
Physical Location & Seq
Forward (+)
1476 .. 2341
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025334.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
atggctttcttcaagtgcttcaagaaagggacagtcatcatcctcgaggattcggggacactcaaggtgatggcactactttctcacatcctcgagtggactcatgtgacacctcgccaactagctatgtttcgacaacagaggtctggcaaagacaaacaaagctcaaatgtgttgtcattgaagtcttcgcatcatgatcagaacaatcctcaagtcccattcacgcttctcaacgatagtatatgcaacggtttagtgctgtggagcagtgcatttctagcaaacagagggttctcttacacagagttctactgggaatgggtagacgatatcttaagcaggaatggaaagcttattcgggaggctggtctctatcgagcgatattcgcctcactattcagctatgacctcgttgcacctgtcatacgggctttctgtgagtattggtgtcctacgacgaataccctccacacttgtagcagggaaatgtccatctccctctgggatttggaccaaattggaggtttgcccattgccggactattttatgatgaggttgttccagctgttgaagagctttctgcaacaagcaaaaggagtcaacagagccgctatttgtttctcgcctaccataagatctgtaaggaaggtcaaaggcagaaagtgaagataacttcatggatacgacactactatagaggagctttgcgctataagaggcctccgaacaaaagcagcaggaacaaaagagacccacccccgaatgtgtttaacccatctgacaagatccatgagatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

267

Amino Acids

30.86

Weight (kDa)

9.4

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AccI GTMKAC 1 cut(s) 327
AciI CCGC 1 cut(s) 613
AclWI GGATC 1 cut(s) 784
AfiI CCNNNNNNNGG 1 cut(s) 539
AflII CTTAAG 1 cut(s) 337
AgsI TTSAA 4 cut(s) 13, 22, 184, 575
AluBI AGCT 7 cut(s) 125, 165, 355, 405, 569, 580, 707
AluI AGCT 7 cut(s) 125, 165, 355, 405, 569, 580, 707
Alw26I GTCTC 2 cut(s) 377, 747
AlwI GGATC 1 cut(s) 784
Ama87I CYCGRG 2 cut(s) 44, 92
AoxI GGCC 1 cut(s) 722
ApeKI GCWGC 1 cut(s) 738
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 44, 92
AvaII GGWCC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 750
BccI CCATC 3 cut(s) 64, 503, 787
BciVI GTATCC 1 cut(s) 678
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 377, 747
BfaI CTAG 2 cut(s) 122, 281
BfmI CTRYAG 1 cut(s) 697
BfrI CTTAAG 1 cut(s) 337
BfuI GTATCC 1 cut(s) 678
BglII AGATCT 2 cut(s) 639, 798
BisI GCNGC 2 cut(s) 613, 739
BlsI GCNGC 2 cut(s) 614, 740
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 2 cut(s) 44, 92
BmgT120I GGNCC 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 47, 198
BsaI GGTCTC 2 cut(s) 377, 747
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 534
BseGI GGATG 2 cut(s) 39, 87
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 1 cut(s) 534
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 717
BseXI GCAGC 1 cut(s) 750
BshFI GGCC 1 cut(s) 724
BsiHKCI CYCGRG 2 cut(s) 44, 92
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 3 cut(s) 43, 70, 203
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 2 cut(s) 377, 747
BsmFI GGGAC 3 cut(s) 43, 70, 203
BsnI GGCC 1 cut(s) 724
Bso31I GGTCTC 2 cut(s) 377, 747
BsoBI CYCGRG 2 cut(s) 44, 92
Bsp143I GATC 4 cut(s) 199, 639, 789, 798
BspACI CCGC 1 cut(s) 613
BspANI GGCC 1 cut(s) 724
BspHI TCATGA 1 cut(s) 196
BspPI GGATC 1 cut(s) 784
BspQI GCTCTTC 1 cut(s) 570
BspTI CTTAAG 1 cut(s) 337
BspTNI GGTCTC 2 cut(s) 377, 747
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 320
BssMI GATC 4 cut(s) 199, 639, 789, 798
Bst4CI ACNGT 2 cut(s) 34, 254
Bst6I CTCTTC 1 cut(s) 570
BstAFI CTTAAG 1 cut(s) 337
BstF5I GGATG 2 cut(s) 39, 87
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 4 cut(s) 202, 642, 792, 801
BstMAI GTCTC 2 cut(s) 377, 747
BstMBI GATC 4 cut(s) 199, 639, 789, 798
BstMWI GCNNNNNNNGC 2 cut(s) 281, 389
BstSFI CTRYAG 1 cut(s) 697
BstV1I GCAGC 1 cut(s) 750
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 639, 789, 798
BstYI RGATCY 3 cut(s) 639, 789, 798
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 1 cut(s) 724
BtsCI GGATG 2 cut(s) 39, 87
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 514
CviAII CATG 4 cut(s) 104, 197, 681, 794
DpnI GATC 4 cut(s) 201, 641, 791, 800
DpnII GATC 4 cut(s) 199, 639, 789, 798
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 724
Eco31I GGTCTC 2 cut(s) 377, 747
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 514
Eco88I CYCGRG 2 cut(s) 44, 92
EcoRV GATATC 1 cut(s) 334
FaeI CATG 4 cut(s) 107, 200, 684, 797
FaqI GGGAC 3 cut(s) 43, 70, 203
FatI CATG 4 cut(s) 103, 196, 680, 793
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 613, 739
FokI GGATG 2 cut(s) 26, 74
Fsp4HI GCNGC 2 cut(s) 613, 739
FspBI CTAG 2 cut(s) 122, 281
GlaI GCGC 1 cut(s) 713
GluI GCNGC 2 cut(s) 613, 739
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 540
HhaI GCGC 1 cut(s) 714
Hin1II CATG 4 cut(s) 107, 200, 684, 797
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 3 cut(s) 50, 100, 601
HpaII CCGG 1 cut(s) 540
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 99, 328, 605
Hpy188I TCNGA 4 cut(s) 204, 729, 784, 803
Hpy188III TCNNGA 3 cut(s) 22, 197, 362
Hpy8I GTNNAC 3 cut(s) 99, 328, 605
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 644
HpyCH4III ACNGT 2 cut(s) 34, 254
HpyCH4V TGCA 4 cut(s) 249, 275, 419, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 389
Hsp92II CATG 4 cut(s) 107, 200, 684, 797
HspAI GCGC 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 4 cut(s) 199, 639, 789, 798
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 267, 704
Lsp1109I GCAGC 1 cut(s) 750
LweI GCATC 1 cut(s) 202
MaeI CTAG 2 cut(s) 122, 281
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 201, 641, 791, 800
MboI GATC 4 cut(s) 199, 639, 789, 798
MboII GAAGA 3 cut(s) 180, 587, 682
MflI RGATCY 3 cut(s) 639, 789, 798
MluCI AATT 1 cut(s) 519
MlyI GAGTC 2 cut(s) 94, 610
MseI TTAA 2 cut(s) 338, 774
MspA1I CMGCKG 1 cut(s) 569
MspCI CTTAAG 1 cut(s) 337
MspI CCGG 1 cut(s) 540
MwoI GCNNNNNNNGC 2 cut(s) 281, 389
NdeII GATC 4 cut(s) 199, 639, 789, 798
NlaIII CATG 4 cut(s) 107, 200, 684, 797
NmuCI GTSAC 1 cut(s) 106
PaeR7I CTCGAG 2 cut(s) 44, 92
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 724
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 614, 740
PleI GAGTC 2 cut(s) 94, 609
PpsI GAGTC 2 cut(s) 94, 609
PspPI GGNCC 1 cut(s) 514
PspXI VCTCGAGB 2 cut(s) 44, 92
PsuI RGATCY 3 cut(s) 639, 789, 798
PvuII CAGCTG 1 cut(s) 569
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 2 cut(s) 338, 774
SatI GCNGC 2 cut(s) 613, 739
Sau3AI GATC 4 cut(s) 199, 639, 789, 798
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 94, 610
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 697
Sfr274I CTCGAG 2 cut(s) 44, 92
SinI GGWCC 1 cut(s) 514
SlaI CTCGAG 2 cut(s) 44, 92
SmlI CTYRAG 5 cut(s) 44, 62, 92, 213, 337
SmoI CTYRAG 5 cut(s) 44, 62, 92, 213, 337
Sse9I AATT 1 cut(s) 519
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 1 cut(s) 613
SspMI CTAG 2 cut(s) 122, 281
StuI AGGCCT 1 cut(s) 724
TaaI ACNGT 2 cut(s) 34, 254
TaqI TCGA 4 cut(s) 45, 93, 133, 379
TasI AATT 1 cut(s) 519
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 338, 774
Tru9I TTAA 2 cut(s) 338, 774
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 738
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 669
TspRI CASTG 1 cut(s) 277
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 514
XhoI CTCGAG 2 cut(s) 44, 92
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 2 cut(s) 122, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.