Rroxscaffold_3G00251750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000179
Physical Location & Seq
Forward (+)
45692374 .. 45693994
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251750.1

Sequence Viewer

Length: 654 bp
ATGACTTCAACCTGCCTCTCTCCAGTGACTTCCTCAATAAAAGTGACTCACGAAGTTAACTTTCAGTTACCTTGCTCCACTGTCTTTTGTCCTTGTGTTGCAGAGCAAACTGTCAAGCAATTAAAGGTCATTTGCCTTCACCCGTTTATTTATTTCTCAGTCAAGGGATTAATGATAGCTTGTGCTTACCCTCTCTTTCTCTATCCTCTGACAGGTACTGGAACCACTACTATTTCCTTGTCTTGGGTTCCGCGAGTCGTCAGCAATCATATTTTCTTTGTTAAGGGGCAACGCAAGGCGGGATTCAAGAACTGTATTGCAGGCAAAGTCGACCTCGTCTCTGCTAGGAGAAATCCTTCAGGGTTTTGGCGACAATTGAAGAACGCAGACGACCTAAATGCTTGGATTTTTCCACTTTTTGATTGTGGGAAAATCCTCTCAAAGCAGATTAGGCTTTGCGTGTTTTGTCGACGTCAAAGAGAAGAACGTGAACGTCCTAAACGCTTGGATTCCTCCACCTTTGCTCGTGGTAGGGTCCACCAAAAGCGGTTAGGCTTTACGTATTTGGTGGTTCATGAAGAGAAGAACGCGGACGTCCTAAACGCTTGGATTCCTCCACATTTGTGCGGGGTAGGGTCCACCGAAAGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.48

Weight (kDa)

9.6

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 475, 597
Acc36I ACCTGC 1 cut(s) 20
AccI GTMKAC 2 cut(s) 330, 469
AccII CGCG 2 cut(s) 253, 590
AciI CCGC 6 cut(s) 251, 299, 547, 590, 627, 648
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 2 cut(s) 472, 594
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 212, 243
AgsI TTSAA 3 cut(s) 9, 307, 379
AleI CACNNNNGTG 1 cut(s) 622
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 218
AseI ATTAAT 1 cut(s) 170
Asp700I GAANNNNTTC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 535, 636
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 535, 636
BauI CACGAG 1 cut(s) 525
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 1 cut(s) 345
BfuAI ACCTGC 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 535, 636
BmgT120I GGNCC 2 cut(s) 535, 636
BmiI GGNNCC 4 cut(s) 223, 249, 536, 637
BpmI CTGGAG 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 561
BsaHI GRCGYC 2 cut(s) 472, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 243
Bse1I ACTGG 2 cut(s) 23, 223
BseLI CCNNNNNNNGG 2 cut(s) 212, 243
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 23, 223
Bsh1236I CGCG 2 cut(s) 253, 590
BslI CCNNNNNNNGG 2 cut(s) 212, 243
BsmAI GTCTC 1 cut(s) 343
BsmBI CGTCTC 1 cut(s) 343
BspACI CCGC 6 cut(s) 251, 299, 547, 590, 627, 648
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 2 cut(s) 253, 590
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 4 cut(s) 223, 249, 536, 637
BspMI ACCTGC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 23, 223
BssNI GRCGYC 2 cut(s) 472, 594
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 82, 112, 314
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 2 cut(s) 472, 594
BstBAI YACGTR 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 157
BstENI CCTNNNNNAGG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 253, 590
BstMAI GTCTC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstSNI TACGTA 1 cut(s) 561
BstUI CGCG 2 cut(s) 253, 590
BtsIMutI CAGTG 2 cut(s) 30, 78
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 535, 636
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 575
CviJI RGCY 3 cut(s) 179, 454, 555
CviKI_1 RGCY 3 cut(s) 179, 454, 555
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco105I TACGTA 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 535, 636
Eco57I CTGAAG 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 1 cut(s) 578
FaiI YATR 2 cut(s) 270, 576
FatI CATG 1 cut(s) 574
FauI CCCGC 2 cut(s) 292, 620
FblI GTMKAC 2 cut(s) 330, 469
FspBI CTAG 1 cut(s) 345
GsuI CTGGAG 1 cut(s) 6
Hin1I GRCGYC 2 cut(s) 472, 594
Hin1II CATG 1 cut(s) 578
HincII GTYRAC 3 cut(s) 58, 331, 470
HindII GTYRAC 3 cut(s) 58, 331, 470
HinfI GANTC 5 cut(s) 46, 255, 303, 509, 610
HpaI GTTAAC 1 cut(s) 58
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 6 cut(s) 58, 331, 470, 491, 538, 639
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 3 cut(s) 50, 307, 575
Hpy8I GTNNAC 6 cut(s) 58, 331, 470, 491, 538, 639
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 146, 366
HpyCH4III ACNGT 3 cut(s) 82, 112, 314
HpyCH4IV ACGT 5 cut(s) 472, 487, 493, 560, 594
HpyCH4V TGCA 2 cut(s) 101, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 5 cut(s) 472, 487, 493, 560, 594
Hsp92I GRCGYC 2 cut(s) 472, 594
Hsp92II CATG 1 cut(s) 578
KspAI GTTAAC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 6 cut(s) 25, 36, 198, 204, 306, 345
MaeI CTAG 1 cut(s) 345
MaeII ACGT 5 cut(s) 472, 487, 493, 560, 594
MaeIII GTNAC 3 cut(s) 25, 43, 66
MboII GAAGA 4 cut(s) 391, 494, 590, 595
MfeI CAATTG 1 cut(s) 374
MluCI AATT 2 cut(s) 119, 374
MlyI GAGTC 2 cut(s) 40, 264
MnlI CCTC 8 cut(s) 26, 43, 201, 216, 344, 446, 523, 624
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 4 cut(s) 57, 122, 170, 282
MslI CAYNNNNRTG 1 cut(s) 622
MunI CAATTG 1 cut(s) 374
MvnI CGCG 2 cut(s) 253, 590
MwoI GCNNNNNNNGC 1 cut(s) 451
NlaIII CATG 1 cut(s) 578
NlaIV GGNNCC 4 cut(s) 223, 249, 536, 637
NmuCI GTSAC 2 cut(s) 25, 43
OliI CACNNNNGTG 1 cut(s) 622
PagI TCATGA 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 3 cut(s) 303, 509, 610
PflFI GACNNNGTC 1 cut(s) 335
PleI GAGTC 2 cut(s) 40, 263
PpsI GAGTC 2 cut(s) 40, 263
Ppu21I YACGTR 1 cut(s) 561
PshBI ATTAAT 1 cut(s) 170
PspN4I GGNNCC 4 cut(s) 223, 249, 536, 637
PspPI GGNCC 2 cut(s) 535, 636
PstNI CAGNNNCTG 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 622
SalI GTCGAC 2 cut(s) 329, 468
SaqAI TTAA 4 cut(s) 57, 122, 170, 282
Sau96I GGNCC 2 cut(s) 535, 636
SchI GAGTC 2 cut(s) 40, 264
SinI GGWCC 2 cut(s) 535, 636
SmiMI CAYNNNNRTG 1 cut(s) 622
SnaBI TACGTA 1 cut(s) 561
Sse9I AATT 2 cut(s) 119, 374
SsiI CCGC 6 cut(s) 251, 299, 547, 590, 627, 648
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 3 cut(s) 82, 112, 314
TaiI ACGT 5 cut(s) 475, 490, 496, 563, 597
TaqI TCGA 2 cut(s) 330, 469
TasI AATT 2 cut(s) 119, 374
TfiI GAWTC 3 cut(s) 303, 509, 610
Tru1I TTAA 4 cut(s) 57, 122, 170, 282
Tru9I TTAA 4 cut(s) 57, 122, 170, 282
TscAI CASTG 2 cut(s) 30, 85
TseFI GTSAC 2 cut(s) 25, 43
Tsp45I GTSAC 2 cut(s) 25, 43
TspDTI ATGAA 2 cut(s) 563, 591
TspRI CASTG 2 cut(s) 30, 85
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 535, 636
VspI ATTAAT 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 210
XmiI GTMKAC 2 cut(s) 330, 469
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 1 cut(s) 345
ZraI GACGTC 2 cut(s) 473, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.