Rmu_sc0006695.1_g000046

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0000179
Physical Location & Seq
Forward (+)
213339 .. 216403
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000046.1.cds

Sequence Viewer

Length: 2199 bp
atggctttcttcaagtgcttcaagaaagggacagtcaccattctcgaggatctggaggacactcaaagtgatggcactactcttacaatggagcagtgcatttcgagcaaatgggggttctcttacacagagttctactggaaatgggtagaagatatcttaagcaggaatggcaagcttattcgggaggctggtctttatcgaccgatattcgcctcactattcatctatgaccacgttgcacctgtcatacgggctttttgtgagtattggcgtcctacgacgaataccctcaacacttctagcggggaaatgtccatctccctctgggatttggaccaacttggagggggtcaacagagctgccgctacttatttctcgcctaccacaaactttacaaggaaggtcaagggcagaaagtgaagataacttcatggatacgatattggtatagaggagctttgcgctataagaggcctccgaacaaaagcagcaggaacaaaagagactcacccccgaatgcgtttaacccatctggcacgatccatgagatctcacaacgaacttctgcagaccttgtagtatttgatgacttaggcatggagggtgacgatatagagcccacctatttggctgcatttcttgcttgttggttgtgcctgtttgttttacccagagacaacaccggtttgattcgtccgggagtattcaaagttgccagcaaaatgtcacaaggtctaaaattttgcctagcagtactggtgctggctagcatttatcagggtttgaacgagatctctatttctagtgatccagctaagcatgttgaggactcacaggctctttctttgttcaatgcatgtgacaatgtgaggatggttgcatttgccagggtattttcggagagcaggagtgctttcacggagtacatggttactagagactatgtcgattggtggtctaaagtgtaccattctacactagtgaagacaacgaaagtagcgcctatgaagggaccacaacaaaagcctctgaaagcaaaagaagatatgaacgtcacccgtgcagtagcgcctcattgcaaaaatgtgattccttgtgaagttgaatgtagcaccagcatccctgatcctcctaataggactttgcttcctagtagtgattgtcagactcatccgctcaacactctagaagatgatggggactctttagattctcacatcgctttggtccatccacttaagctgaaaaaacctgccatcaaagaaagaaggcgtagcggaagcagcagtagcaataatagtgaagtgcactttaagcgtcggaaaactgacaccagtcctggccctacttattgcgatctcaaactcagaatactgactttcttggtgacgttccaacttcttcacaaccgatgctgcaacgtaatgagggtgcagagattgatgggtcattcactttggggggacaatgatgcctcctcaaatcctatatgtgttccttctgcagcgaaacttgaggcttactctttacccacgaaaggaacatccaatgcaaagaatgactcacaacaagttgaccctaaaggtccacttaccaaggtgcatcctcctaagcctttgaacactatagccttttctgaggcctctcttggtggagctgctattatagatgctagtcaaagacttcgcaatattcgtcaacaagctgccaccacaatttatgaacaaattgaggatatgataatgaagcactcctcaaagaccattctttccagcaagggggaacttgacaagctgatagctgagcttagcctttatgggattgatccttcatccgtaaggggcaaagttgagggattgttgaccagtgctgaccaatacaacttggcacggcttgcttattcatgcaaggctagtactccaggcacatgtaatcaacgtctggctgacacagaatcagaaattacaaaggtcacttcaattcgtcaagccgactctgatcattaccaatctgccctcaaatatttggagaaattaaaggaggaacaacgaaaattggagcaaacagtgatttcattagatgagagacttctattacatgagaagaagcttgttgacttagaaaaagagaagactcaaatcaaagagacccctgaggtgaccactgcagagcttgagatgacaaaatcattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

732

Amino Acids

82.33

Weight (kDa)

8.59

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1264
AccBSI CCGCTC 1 cut(s) 1180
AciI CCGC 4 cut(s) 306, 367, 1178, 1281
AclWI GGATC 5 cut(s) 57, 538, 806, 1124, 1823
AcsI RAATTY 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 274
AfaI GTAC 4 cut(s) 759, 929, 971, 1921
AfiI CCNNNNNNNGG 3 cut(s) 1013, 1541, 1782
AflII CTTAAG 2 cut(s) 160, 1241
AflIII ACRYGT 1 cut(s) 1931
AgeI ACCGGT 1 cut(s) 686
AgsI TTSAA 8 cut(s) 13, 22, 712, 790, 856, 1109, 1624, 1983
AhlI ACTAGT 1 cut(s) 982
AjnI CCWGG 3 cut(s) 890, 1342, 1924
Alw21I GWGCWC 1 cut(s) 1314
Alw26I GTCTC 5 cut(s) 501, 672, 936, 2083, 2144
Alw44I GTGCAC 1 cut(s) 1310
AlwI GGATC 5 cut(s) 57, 538, 806, 1124, 1823
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 476, 1345, 1644
ApaLI GTGCAC 1 cut(s) 1310
ApeKI GCWGC 8 cut(s) 363, 492, 635, 1287, 1419, 1508, 1661, 1709
ApoI RAATTY 1 cut(s) 743
AsiGI ACCGGT 1 cut(s) 686
AspLEI GCGC 3 cut(s) 468, 1006, 1075
AspS9I GGNCC 5 cut(s) 337, 1016, 1231, 1346, 1589
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 6 cut(s) 28, 504, 620, 1051, 1402, 2173
AsuNHI GCTAGC 1 cut(s) 770
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 4 cut(s) 337, 1016, 1231, 1589
AxyI CCTNAGG 1 cut(s) 2157
BaeGI GKGCMC 1 cut(s) 1314
BanII GRGCYC 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 995, 2141
Bbv12I GWGCWC 1 cut(s) 1314
BbvI GCAGC 8 cut(s) 350, 504, 622, 1299, 1406, 1520, 1648, 1696
BccI CCATC 8 cut(s) 65, 326, 541, 871, 1193, 1242, 1268, 1441
BceAI ACGGC 1 cut(s) 1910
BciT130I CCWGG 3 cut(s) 892, 1344, 1926
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 2002
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 5 cut(s) 501, 672, 936, 2083, 2144
BcuI ACTAGT 1 cut(s) 982
BfmI CTRYAG 4 cut(s) 570, 1506, 1629, 2169
BfoI RGCGCY 2 cut(s) 1007, 1076
BfrI CTTAAG 2 cut(s) 160, 1241
BfuAI ACCTGC 1 cut(s) 1264
BfuI GTATCC 1 cut(s) 432
BglII AGATCT 2 cut(s) 552, 795
BisI GCNGC 9 cut(s) 364, 367, 493, 636, 1288, 1420, 1509, 1662, 1710
BlpI GCTNAGC 3 cut(s) 819, 1806, 1811
BlsI GCNGC 9 cut(s) 365, 368, 494, 637, 1289, 1421, 1510, 1663, 1711
BmcAI AGTACT 2 cut(s) 759, 1921
Bme1390I CCNGG 4 cut(s) 702, 892, 1344, 1926
Bme18I GGWCC 4 cut(s) 337, 1016, 1231, 1589
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 5 cut(s) 337, 1016, 1231, 1346, 1589
BmiI GGNNCC 1 cut(s) 1017
BmrFI CCNGG 4 cut(s) 702, 892, 1344, 1926
BmsI GCATC 5 cut(s) 1131, 1406, 1465, 1615, 1663
BmtI GCTAGC 1 cut(s) 774
BoxI GACNNNNGTC 1 cut(s) 1338
BpiI GAAGAC 2 cut(s) 995, 2141
BplI GAGNNNNNCTC 2 cut(s) 1511, 1543
BpmI CTGGAG 2 cut(s) 74, 1908
Bpu10I CCTNAGC 1 cut(s) 1614
Bpu1102I GCTNAGC 3 cut(s) 819, 1806, 1811
BpuEI CTTGAG 2 cut(s) 1538, 2198
BpuMI CCSGG 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 2144
BsaJI CCNNGG 2 cut(s) 891, 1599
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 3 cut(s) 1013, 1541, 1782
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 4 cut(s) 143, 765, 1338, 1869
Bse21I CCTNAGG 1 cut(s) 2157
Bse3DI GCAATG 1 cut(s) 1078
BseBI CCWGG 3 cut(s) 892, 1344, 1926
BseDI CCNNGG 2 cut(s) 891, 1599
BseGI GGATG 7 cut(s) 882, 1122, 1174, 1234, 1547, 1606, 1835
BseLI CCNNNNNNNGG 3 cut(s) 1013, 1541, 1782
BseMI GCAATG 1 cut(s) 1078
BseMII CTCAG 4 cut(s) 1384, 1632, 1797, 2148
BseNI ACTGG 4 cut(s) 143, 765, 1338, 1869
BseRI GAGGAG 3 cut(s) 471, 1471, 1747
BseSI GKGCMC 1 cut(s) 1314
BseXI GCAGC 8 cut(s) 350, 504, 622, 1299, 1406, 1520, 1648, 1696
BsgI GTGCAG 2 cut(s) 1086, 1457
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 478, 1347, 1646
BshTI ACCGGT 1 cut(s) 686
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 1314
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 687, 701
BslFI GGGAC 4 cut(s) 43, 1029, 1217, 1481
BslI CCNNNNNNNGG 3 cut(s) 1013, 1541, 1782
BsmAI GTCTC 5 cut(s) 501, 672, 936, 2083, 2144
BsmFI GGGAC 4 cut(s) 43, 1029, 1217, 1481
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 3 cut(s) 478, 1347, 1646
Bso31I GGTCTC 1 cut(s) 2144
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 624, 1314
Bsp143I GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
Bsp1720I GCTNAGC 3 cut(s) 819, 1806, 1811
BspACI CCGC 4 cut(s) 306, 367, 1178, 1281
BspANI GGCC 3 cut(s) 478, 1347, 1646
BspCNI CTCAG 4 cut(s) 1383, 1633, 1798, 2149
BspLI GGNNCC 1 cut(s) 1017
BspMAI CTGCAG 3 cut(s) 574, 1510, 2173
BspMI ACCTGC 1 cut(s) 1264
BspOI GCTAGC 1 cut(s) 774
BspPI GGATC 5 cut(s) 57, 538, 806, 1124, 1823
BspTI CTTAAG 2 cut(s) 160, 1241
BspTNI GGTCTC 1 cut(s) 2144
BsrBI CCGCTC 1 cut(s) 1180
BsrDI GCAATG 1 cut(s) 1078
BsrFI RCCGGY 1 cut(s) 686
BsrI ACTGG 4 cut(s) 143, 765, 1338, 1869
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 2 cut(s) 891, 1599
BssMI GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
BssNI GRCGYC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 1599
Bst2UI CCWGG 3 cut(s) 892, 1344, 1926
Bst4CI ACNGT 2 cut(s) 34, 2071
BstACI GRCGYC 1 cut(s) 274
BstAFI CTTAAG 2 cut(s) 160, 1241
BstAPI GCANNNNNTGC 2 cut(s) 644, 1898
BstC8I GCNNGC 5 cut(s) 176, 721, 768, 772, 1899
BstDEI CTNAG 9 cut(s) 595, 819, 1370, 1614, 1641, 1806, 1811, 2122, 2157
BstEII GGTNACC 1 cut(s) 2161
BstF5I GGATG 7 cut(s) 882, 1122, 1174, 1234, 1547, 1606, 1835
BstH2I RGCGCY 2 cut(s) 1007, 1076
BstHHI GCGC 3 cut(s) 468, 1006, 1075
BstKTI GATC 9 cut(s) 52, 546, 555, 798, 814, 1132, 1363, 1831, 2005
BstMAI GTCTC 5 cut(s) 501, 672, 936, 2083, 2144
BstMBI GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 7 cut(s) 105, 171, 644, 1287, 1293, 1318, 1898
BstNI CCWGG 3 cut(s) 892, 1344, 1926
BstNSI RCATGY 3 cut(s) 827, 864, 1935
BstPAI GACNNNNGTC 1 cut(s) 1338
BstPI GGTNACC 1 cut(s) 2161
BstSCI CCNGG 4 cut(s) 700, 890, 1342, 1924
BstSFI CTRYAG 4 cut(s) 570, 1506, 1629, 2169
BstSLI GKGCMC 1 cut(s) 1314
BstV1I GCAGC 8 cut(s) 350, 504, 622, 1299, 1406, 1520, 1648, 1696
BstV2I GAAGAC 2 cut(s) 995, 2141
BstX2I RGATCY 3 cut(s) 49, 552, 795
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 3 cut(s) 49, 552, 795
Bsu36I CCTNAGG 1 cut(s) 2157
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 3 cut(s) 478, 1347, 1646
BtgZI GCGATG 1 cut(s) 1207
BtsCI GGATG 7 cut(s) 882, 1122, 1174, 1234, 1547, 1606, 1835
BtsI GCAGTG 2 cut(s) 101, 2166
BtsIMutI CAGTG 4 cut(s) 101, 1876, 2076, 2166
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 5 cut(s) 176, 721, 768, 772, 1899
CfoI GCGC 3 cut(s) 468, 1006, 1075
Cfr10I RCCGGY 1 cut(s) 686
Cfr13I GGNCC 5 cut(s) 337, 1016, 1231, 1346, 1589
CseI GACGC 2 cut(s) 263, 1310
Csp6I GTAC 4 cut(s) 758, 928, 970, 1920
CspAI ACCGGT 1 cut(s) 686
CviAII CATG 9 cut(s) 435, 548, 601, 824, 861, 931, 1908, 1932, 2102
CviQI GTAC 4 cut(s) 758, 928, 970, 1920
DdeI CTNAG 9 cut(s) 595, 819, 1370, 1614, 1641, 1806, 1811, 2122, 2157
DpnI GATC 9 cut(s) 51, 545, 554, 797, 813, 1131, 1362, 1830, 2004
DpnII GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
Eco130I CCWWGG 1 cut(s) 1599
Eco147I AGGCCT 2 cut(s) 478, 1646
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 2144
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 4 cut(s) 337, 1016, 1231, 1589
Eco81I CCTNAGG 1 cut(s) 2157
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 2161
EcoO65I GGTNACC 1 cut(s) 2161
EcoRII CCWGG 3 cut(s) 890, 1342, 1924
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 1599
EcoT22I ATGCAT 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 1599
FaeI CATG 9 cut(s) 438, 551, 604, 827, 864, 934, 1911, 1935, 2105
FalI AAGNNNNNCTT 2 cut(s) 1578, 1610
FaqI GGGAC 4 cut(s) 43, 1029, 1217, 1481
FatI CATG 9 cut(s) 434, 547, 600, 823, 860, 930, 1907, 1931, 2101
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 2002
Fnu4HI GCNGC 9 cut(s) 364, 367, 493, 636, 1288, 1420, 1509, 1662, 1710
FokI GGATG 7 cut(s) 889, 1109, 1161, 1221, 1534, 1593, 1822
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 9 cut(s) 364, 367, 493, 636, 1288, 1420, 1509, 1662, 1710
GlaI GCGC 3 cut(s) 467, 1005, 1074
GluI GCNGC 9 cut(s) 364, 367, 493, 636, 1288, 1420, 1509, 1662, 1710
GsuI CTGGAG 2 cut(s) 74, 1908
HaeII RGCGCY 2 cut(s) 1007, 1076
HaeIII GGCC 3 cut(s) 478, 1347, 1646
HapII CCGG 2 cut(s) 687, 701
HgaI GACGC 2 cut(s) 263, 1310
HhaI GCGC 3 cut(s) 468, 1006, 1075
Hin1I GRCGYC 1 cut(s) 274
Hin1II CATG 9 cut(s) 438, 551, 604, 827, 864, 934, 1911, 1935, 2105
Hin6I GCGC 3 cut(s) 466, 1004, 1073
HinP1I GCGC 3 cut(s) 466, 1004, 1073
HincII GTYRAC 5 cut(s) 356, 1579, 1703, 1866, 2119
HindII GTYRAC 5 cut(s) 356, 1579, 1703, 1866, 2119
HindIII AAGCTT 2 cut(s) 176, 2111
HpaII CCGG 2 cut(s) 687, 701
HphI GGTGA 6 cut(s) 28, 504, 620, 1051, 1402, 2173
Hpy166II GTNNAC 8 cut(s) 356, 970, 1312, 1579, 1592, 1703, 1866, 2119
Hpy188I TCNGA 9 cut(s) 483, 904, 1035, 1170, 1326, 1373, 1642, 1963, 2002
Hpy188III TCNNGA 5 cut(s) 22, 44, 53, 185, 1190
Hpy8I GTNNAC 8 cut(s) 356, 970, 1312, 1579, 1592, 1703, 1866, 2119
Hpy99I CGWCG 2 cut(s) 286, 1326
HpyAV CCTTC 5 cut(s) 398, 1006, 1266, 1512, 1842
HpyCH4III ACNGT 2 cut(s) 34, 2071
HpyCH4IV ACGT 5 cut(s) 237, 1056, 1394, 1425, 1942
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 171, 644, 1287, 1293, 1318, 1898
HpyF3I CTNAG 9 cut(s) 595, 819, 1370, 1614, 1641, 1806, 1811, 2122, 2157
HpySE526I ACGT 5 cut(s) 237, 1056, 1394, 1425, 1942
Hsp92I GRCGYC 1 cut(s) 274
Hsp92II CATG 9 cut(s) 438, 551, 604, 827, 864, 934, 1911, 1935, 2105
HspAI GCGC 3 cut(s) 466, 1004, 1073
Ksp22I TGATCA 1 cut(s) 2002
Kzo9I GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
LmnI GCTCC 4 cut(s) 91, 458, 1658, 2062
Lsp1109I GCAGC 8 cut(s) 350, 504, 622, 1299, 1406, 1520, 1648, 1696
LweI GCATC 5 cut(s) 1131, 1406, 1465, 1615, 1663
MaeII ACGT 5 cut(s) 237, 1056, 1394, 1425, 1942
MaeIII GTNAC 9 cut(s) 34, 608, 729, 863, 934, 1057, 1390, 1975, 2161
MalI GATC 9 cut(s) 51, 545, 554, 797, 813, 1131, 1362, 1830, 2004
MbiI CCGCTC 1 cut(s) 1180
MboI GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
MboII GAAGA 8 cut(s) 164, 436, 1000, 1058, 1205, 1397, 2119, 2146
MflI RGATCY 3 cut(s) 49, 552, 795
MhlI GDGCHC 2 cut(s) 624, 1314
MluCI AATT 7 cut(s) 743, 1719, 1731, 1965, 1983, 2036, 2057
MlyI GAGTC 7 cut(s) 503, 827, 1165, 1199, 1559, 1991, 2131
MmeI TCCRAC 2 cut(s) 1304, 1423
Mph1103I ATGCAT 1 cut(s) 862
MseI TTAA 5 cut(s) 161, 528, 1242, 1317, 2039
MspCI CTTAAG 2 cut(s) 160, 1241
MspI CCGG 2 cut(s) 687, 701
MspR9I CCNGG 4 cut(s) 702, 892, 1344, 1926
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 3 cut(s) 892, 1344, 1926
MwoI GCNNNNNNNGC 7 cut(s) 105, 171, 644, 1287, 1293, 1318, 1898
NciI CCSGG 1 cut(s) 702
NdeII GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
NheI GCTAGC 1 cut(s) 770
NlaIII CATG 9 cut(s) 438, 551, 604, 827, 864, 934, 1911, 1935, 2105
NlaIV GGNNCC 1 cut(s) 1017
NmuCI GTSAC 8 cut(s) 34, 608, 729, 863, 1057, 1390, 1975, 2161
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 3 cut(s) 827, 864, 1935
PaeR7I CTCGAG 1 cut(s) 44
PceI AGGCCT 2 cut(s) 478, 1646
PciI ACATGT 1 cut(s) 1931
PcsI WCGNNNNNNNCGW 1 cut(s) 1696
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 4 cut(s) 694, 1093, 1214, 1958
PflFI GACNNNGTC 1 cut(s) 947
PfoI TCCNGGA 1 cut(s) 700
PinAI ACCGGT 1 cut(s) 686
PkrI GCNGC 9 cut(s) 365, 368, 494, 637, 1289, 1421, 1510, 1663, 1711
PleI GAGTC 7 cut(s) 503, 827, 1165, 1199, 1559, 1991, 2131
PpsI GAGTC 7 cut(s) 503, 827, 1165, 1199, 1559, 1991, 2131
PscI ACATGT 1 cut(s) 1931
PshAI GACNNNNGTC 1 cut(s) 1338
Psp6I CCWGG 3 cut(s) 890, 1342, 1924
PspEI GGTNACC 1 cut(s) 2161
PspGI CCWGG 3 cut(s) 890, 1342, 1924
PspN4I GGNNCC 1 cut(s) 1017
PspPI GGNCC 5 cut(s) 337, 1016, 1231, 1346, 1589
PstI CTGCAG 3 cut(s) 574, 1510, 2173
PsuI RGATCY 3 cut(s) 49, 552, 795
PsyI GACNNNGTC 1 cut(s) 947
RsaI GTAC 4 cut(s) 759, 929, 971, 1921
RsaNI GTAC 4 cut(s) 758, 928, 970, 1920
SaqAI TTAA 5 cut(s) 161, 528, 1242, 1317, 2039
SatI GCNGC 9 cut(s) 364, 367, 493, 636, 1288, 1420, 1509, 1662, 1710
Sau3AI GATC 9 cut(s) 49, 543, 552, 795, 811, 1129, 1360, 1828, 2002
Sau96I GGNCC 5 cut(s) 337, 1016, 1231, 1346, 1589
ScaI AGTACT 2 cut(s) 759, 1921
SchI GAGTC 7 cut(s) 503, 827, 1165, 1199, 1559, 1991, 2131
ScrFI CCNGG 4 cut(s) 702, 892, 1344, 1926
SduI GDGCHC 2 cut(s) 624, 1314
SfaNI GCATC 5 cut(s) 1131, 1406, 1465, 1615, 1663
SfcI CTRYAG 4 cut(s) 570, 1506, 1629, 2169
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 4 cut(s) 337, 1016, 1231, 1589
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 5 cut(s) 44, 160, 1241, 1517, 2177
SmoI CTYRAG 5 cut(s) 44, 160, 1241, 1517, 2177
SpeI ACTAGT 1 cut(s) 982
Sse9I AATT 7 cut(s) 743, 1719, 1731, 1965, 1983, 2036, 2057
SseBI AGGCCT 2 cut(s) 478, 1646
SsiI CCGC 4 cut(s) 306, 367, 1178, 1281
SspI AATATT 2 cut(s) 1696, 2027
StuI AGGCCT 2 cut(s) 478, 1646
StyD4I CCNGG 4 cut(s) 700, 890, 1342, 1924
StyI CCWWGG 1 cut(s) 1599
TaaI ACNGT 2 cut(s) 34, 2071
TaiI ACGT 5 cut(s) 240, 1059, 1397, 1428, 1945
TaqI TCGA 4 cut(s) 45, 104, 202, 951
TaqII GACCGA 1 cut(s) 220
TasI AATT 7 cut(s) 743, 1719, 1731, 1965, 1983, 2036, 2057
TatI WGTACW 3 cut(s) 757, 927, 1919
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 4 cut(s) 694, 1093, 1214, 1958
Tru1I TTAA 5 cut(s) 161, 528, 1242, 1317, 2039
Tru9I TTAA 5 cut(s) 161, 528, 1242, 1317, 2039
TscAI CASTG 4 cut(s) 101, 1876, 2076, 2173
TseFI GTSAC 8 cut(s) 34, 608, 729, 863, 1057, 1390, 1975, 2161
TseI GCWGC 8 cut(s) 363, 492, 635, 1287, 1419, 1508, 1661, 1709
Tsp45I GTSAC 8 cut(s) 34, 608, 729, 863, 1057, 1390, 1975, 2161
TspDTI ATGAA 9 cut(s) 214, 423, 1025, 1067, 1740, 1763, 1824, 1896, 2067
TspGWI ACGGA 2 cut(s) 938, 1828
TspRI CASTG 4 cut(s) 101, 1876, 2076, 2173
Tth111I GACNNNGTC 1 cut(s) 947
Vha464I CTTAAG 2 cut(s) 160, 1241
VneI GTGCAC 1 cut(s) 1310
VpaK11BI GGWCC 4 cut(s) 337, 1016, 1231, 1589
XapI RAATTY 1 cut(s) 743
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 3 cut(s) 827, 864, 1935
XhoI CTCGAG 1 cut(s) 44
ZrmI AGTACT 2 cut(s) 759, 1921
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.