Rmu_sc0001025.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001025.1
OG0000179
Physical Location & Seq
Forward (+)
17944 .. 18711
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001025.1_g000004.1.cds

Sequence Viewer

Length: 768 bp
atggctttcttcaagtgcttcaagaaagggacaatcaccattctcgaggatccggaggacgctcaaagtgatggaactactctgcaagtgcacccatctttgactgggcctcaagcaatcgatgtccctccttatgacccttcagctcacatcctccagtggactcatgtagtacctcgccagctggctatgttccgacaaccgagatctggaagagaccaacaaaactcgcatgtacttttgctgaaatcttcgcatcatgatcagaacactcctcagacaccattcaagcttctcagcgatcgtgtacgcaacggttcagtgaagtggagcaatgcatttcgcgcaaatggaggcttctcttacacagagttctattgggaatgggtagaagatatcttaagcaggaatggcaagcttacccgggagactggcctctatcgagctatattcgcctcactgttcagctatgaccgatttgcacctgtcatacgagccttctgcgagtactggtgtcccgtgacgaataccctccacacttctagcggggaaatgtctatctccctctgggatttggaccaacttggaggtttacccattgccggacgattctatgatgaggttgtcccagctgctgaagagctttctgcaacgagcaaagggagtcaacagagctgccgttatttgtttctcgcctaccataagctctgcaaagaaagccaagggcagaaggtgaaaataacttcctggatacgatattggtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

255

Amino Acids

29.21

Weight (kDa)

8.23

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000179)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18561 FvH4_1g29681 FvH4_2g15190 FvH4_3g22800 FvH4_3g22801 FvH4_3g26700 FvH4_4g15162 FvH4_4g15163 FvH4_4g15164 FvH4_4g22273 FvH4_7g02320 FvH4_7g03670 FvH4_7g03671
malus_domestica MD07G1097100.v1.1 MD11G1208600.v1.1 MD15G1303300.v1.1
prunus_persica Prupe.2G070800_v2.0.a1
pyrus_communis pycom02g13430 pycom04g06950 pycom04g09420 pycom04g09610 pycom06g05740 pycom07g00010 pycom07g06720 pycom07g09960 pycom07g10670 pycom07g10680 pycom07g10920 pycom07g27810 pycom08g12110 pycom08g13640 pycom09g03570 pycom09g13470 pycom09g13510 pycom10g01180 pycom10g02180 pycom10g06840 pycom12424g00130 pycom12g03090 pycom12g09570 pycom12g09580 pycom12g09590 pycom1310g00020 pycom13g25030 pycom13g25310 pycom13g25700 pycom13g26160 pycom13g27790 pycom13g28780 pycom13g28790 pycom1683g00070 pycom16g19330 pycom16g21210 pycom16g21710 pycom16g23400 pycom16g24730 pycom17g17550 pycom17g27670 pycom420g00110 pycom420g00130 pycom420g00610 pycom520g00600 pycom675g00050
rosa_chinensis RchiOBHm_Chr1g0316731
rosa_laevigata RLG00000030467
rosa_multiflora Rmu_co8112106.1_g000001 Rmu_co8301911.1_g000001 Rmu_sc0000161.1_g000042 Rmu_sc0000161.1_g000043 Rmu_sc0000173.1_g000035 Rmu_sc0000173.1_g000036 Rmu_sc0000480.1_g000024 Rmu_sc0000670.1_g000020 Rmu_sc0000670.1_g000021 Rmu_sc0000962.1_g000043 Rmu_sc0000962.1_g000044 Rmu_sc0001025.1_g000004 Rmu_sc0001075.1_g000026 Rmu_sc0001075.1_g000027 Rmu_sc0001167.1_g000050 Rmu_sc0001227.1_g000043 Rmu_sc0001346.1_g000006 Rmu_sc0001438.1_g000034 Rmu_sc0001946.1_g000002 Rmu_sc0001981.1_g000005 Rmu_sc0002106.1_g000005 Rmu_sc0002187.1_g000004 Rmu_sc0002187.1_g000005 Rmu_sc0002187.1_g000018 Rmu_sc0002539.1_g000097 Rmu_sc0003008.1_g000050 Rmu_sc0003008.1_g000051 Rmu_sc0003069.1_g000033 Rmu_sc0003069.1_g000034 Rmu_sc0003412.1_g000016 Rmu_sc0003553.1_g000005 Rmu_sc0003553.1_g000006 Rmu_sc0003641.1_g000025 Rmu_sc0003652.1_g000006 Rmu_sc0003687.1_g000019 Rmu_sc0003687.1_g000020 Rmu_sc0004234.1_g000013 Rmu_sc0004249.1_g000005 Rmu_sc0005044.1_g000027 Rmu_sc0005060.1_g000012 Rmu_sc0005816.1_g000005 Rmu_sc0006175.1_g000006 Rmu_sc0006175.1_g000007 Rmu_sc0006695.1_g000046 Rmu_sc0006725.1_g000014 Rmu_sc0006746.1_g000015 Rmu_sc0006746.1_g000016 Rmu_sc0006912.1_g000008 Rmu_sc0007355.1_g000004 Rmu_sc0007705.1_g000001 Rmu_sc0007903.1_g000003 Rmu_sc0007953.1_g000001 Rmu_sc0008630.1_g000001 Rmu_sc0008923.1_g000018 Rmu_sc0008923.1_g000019 Rmu_sc0009186.1_g000003 Rmu_sc0010184.1_g000007 Rmu_sc0010243.1_g000001 Rmu_sc0011242.1_g000004 Rmu_sc0012849.1_g000001 Rmu_sc0012849.1_g000002 Rmu_sc0012883.1_g000001 Rmu_sc0013028.1_g000015 Rmu_sc0015042.1_g000003 Rmu_sc0016730.1_g000002 Rmu_sc0017702.1_g000002 Rmu_sc0017791.1_g000007 Rmu_sc0017874.1_g000005 Rmu_sc0025334.1_g000001 Rmu_sc0025334.1_g000002 Rmu_sc0028789.1_g000001 Rmu_sc0030538.1_g000001 Rmu_sc0033137.1_g000001 Rmu_ssc0000183.1_g000013 Rmu_ssc0000259.1_g000061 Rmu_ssc0000259.1_g000062 Rmu_ssc0000259.1_g000063
rosa_roxburghii Rroxscaffold_173G00435030 Rroxscaffold_173G00435040 Rroxscaffold_1G00033030 Rroxscaffold_2G00093360 Rroxscaffold_2G00113080 Rroxscaffold_2G00146180 Rroxscaffold_3G00227920 Rroxscaffold_3G00251750 Rroxscaffold_4G00328240 Rroxscaffold_5G00333920 Rroxscaffold_5G00338240 Rroxscaffold_5G00342700 Rroxscaffold_6G00412810 Rroxscaffold_6G00423130 Rroxscaffold_7G00175190
rosa_rugosa Rorug01G0029200 Rorug01G0029300 Rorug01G0029400 Rorug01G0029400
rosa_samantha Rh1AG040900 Rh1BG038100 Rh1CG042000 Rh1DG027900
rosa_wichuraiana Rw0G019970 Rw1G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 52
AciI CCGC 1 cut(s) 546
AclWI GGATC 2 cut(s) 44, 57
AcuI CTGAAG 2 cut(s) 126, 657
AfaI GTAC 4 cut(s) 174, 237, 309, 509
AfiI CCNNNNNNNGG 2 cut(s) 209, 602
AflII CTTAAG 1 cut(s) 400
AgsI TTSAA 3 cut(s) 13, 22, 289
AjnI CCWGG 1 cut(s) 746
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 210, 422
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 2 cut(s) 44, 57
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 2 cut(s) 44, 423
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 2 cut(s) 107, 433
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 632, 675
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 107, 577
AsuC2I CCSGG 2 cut(s) 424, 425
AsuHPI GGTGA 2 cut(s) 28, 745
AvaI CYCGRG 2 cut(s) 44, 423
AvaII GGWCC 1 cut(s) 577
BaeGI GKGCMC 1 cut(s) 93
BamHI GGATCC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 619, 662
BccI CCATC 2 cut(s) 65, 103
BceAI ACGGC 1 cut(s) 663
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BciT130I CCWGG 1 cut(s) 748
BciVI GTATCC 1 cut(s) 744
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 424, 425
BcoDI GTCTC 2 cut(s) 210, 422
BfaI CTAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 400
BfuI GTATCC 1 cut(s) 744
BglII AGATCT 1 cut(s) 206
BisI GCNGC 2 cut(s) 633, 676
BlsI GCNGC 2 cut(s) 634, 677
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 3 cut(s) 424, 425, 748
Bme18I GGWCC 1 cut(s) 577
BmeT110I CYCGRG 2 cut(s) 44, 423
BmgT120I GGNCC 2 cut(s) 107, 577
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 3 cut(s) 424, 425, 748
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 424, 425
Bsa29I ATCGAT 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 423, 721
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 602
Bse1I ACTGG 4 cut(s) 109, 157, 436, 515
Bse3DI GCAATG 2 cut(s) 340, 597
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 1 cut(s) 748
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 423, 721
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 209, 602
BseMI GCAATG 2 cut(s) 340, 597
BseMII CTCAG 2 cut(s) 290, 310
BseNI ACTGG 4 cut(s) 109, 157, 436, 515
BseRI GAGGAG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 619, 662
BseYI CCCAGC 1 cut(s) 628
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 2 cut(s) 109, 435
BshVI ATCGAT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 2 cut(s) 44, 423
BsiSI CCGG 3 cut(s) 53, 424, 603
BslFI GGGAC 4 cut(s) 43, 110, 501, 611
BslI CCNNNNNNNGG 2 cut(s) 209, 602
BsmAI GTCTC 2 cut(s) 210, 422
BsmFI GGGAC 4 cut(s) 43, 110, 501, 611
BsnI GGCC 2 cut(s) 109, 435
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 2 cut(s) 44, 423
Bsp1286I GDGCHC 1 cut(s) 93
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 4 cut(s) 49, 206, 262, 301
BspACI CCGC 1 cut(s) 546
BspANI GGCC 2 cut(s) 109, 435
BspCNI CTCAG 2 cut(s) 289, 309
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 52
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 2 cut(s) 44, 57
BspQI GCTCTTC 1 cut(s) 633
BspTI CTTAAG 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 2 cut(s) 340, 597
BsrI ACTGG 4 cut(s) 109, 157, 436, 515
BssECI CCNNGG 2 cut(s) 423, 721
BssMI GATC 4 cut(s) 49, 206, 262, 301
BssT1I CCWWGG 1 cut(s) 721
Bst2UI CCWGG 1 cut(s) 748
Bst4CI ACNGT 2 cut(s) 317, 462
Bst6I CTCTTC 2 cut(s) 208, 633
BstAFI CTTAAG 1 cut(s) 400
BstC8I GCNNGC 3 cut(s) 182, 186, 416
BstDEI CTNAG 2 cut(s) 276, 296
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 4 cut(s) 52, 209, 265, 304
BstMAI GTCTC 2 cut(s) 210, 422
BstMBI GATC 4 cut(s) 49, 206, 262, 301
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 344, 411, 452, 717
BstNI CCWGG 1 cut(s) 748
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 422, 423, 746
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 2 cut(s) 619, 662
BstX2I RGATCY 2 cut(s) 49, 206
BstYI RGATCY 2 cut(s) 49, 206
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 2 cut(s) 109, 435
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 164, 327, 458
Cac8I GCNNGC 3 cut(s) 182, 186, 416
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 107, 577
Cfr9I CCCGGG 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 68
Csp6I GTAC 4 cut(s) 173, 236, 308, 508
CviAII CATG 3 cut(s) 167, 233, 260
CviQI GTAC 4 cut(s) 173, 236, 308, 508
DdeI CTNAG 2 cut(s) 276, 296
DpnI GATC 4 cut(s) 51, 208, 264, 303
DpnII GATC 4 cut(s) 49, 206, 262, 301
Eam1104I CTCTTC 2 cut(s) 208, 633
EarI CTCTTC 2 cut(s) 208, 633
Eco130I CCWWGG 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 577
Eco57I CTGAAG 2 cut(s) 126, 657
Eco88I CYCGRG 2 cut(s) 44, 423
EcoRII CCWGG 1 cut(s) 746
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 3 cut(s) 170, 236, 263
FaqI GGGAC 4 cut(s) 43, 110, 501, 611
FatI CATG 3 cut(s) 166, 232, 259
FauI CCCGC 1 cut(s) 539
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 633, 676
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 633, 676
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 633, 676
GsaI CCCAGC 1 cut(s) 632
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 2 cut(s) 109, 435
HapII CCGG 3 cut(s) 53, 424, 603
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 170, 236, 263
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 668
HindII GTYRAC 1 cut(s) 668
HindIII AAGCTT 2 cut(s) 290, 416
HinfI GANTC 3 cut(s) 163, 609, 664
HpaII CCGG 3 cut(s) 53, 424, 603
HphI GGTGA 2 cut(s) 28, 745
Hpy166II GTNNAC 5 cut(s) 91, 162, 308, 593, 668
Hpy188I TCNGA 3 cut(s) 197, 267, 279
Hpy188III TCNNGA 5 cut(s) 22, 44, 53, 210, 260
Hpy8I GTNNAC 5 cut(s) 91, 162, 308, 593, 668
HpyAV CCTTC 3 cut(s) 150, 508, 724
HpyCH4III ACNGT 2 cut(s) 317, 462
HpyCH4V TGCA 6 cut(s) 85, 91, 338, 482, 650, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 411, 452, 717
HpyF3I CTNAG 2 cut(s) 276, 296
Hsp92II CATG 3 cut(s) 170, 236, 263
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 49, 206, 262, 301
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 1 cut(s) 330
Lsp1109I GCAGC 2 cut(s) 619, 662
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 1 cut(s) 520
MalI GATC 4 cut(s) 51, 208, 264, 303
MboI GATC 4 cut(s) 49, 206, 262, 301
MboII GAAGA 4 cut(s) 225, 243, 404, 650
MflI RGATCY 2 cut(s) 49, 206
MhlI GDGCHC 1 cut(s) 93
MlyI GAGTC 2 cut(s) 157, 673
MmeI TCCRAC 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 340
MroI TCCGGA 1 cut(s) 52
MseI TTAA 1 cut(s) 401
MspA1I CMGCKG 2 cut(s) 184, 632
MspCI CTTAAG 1 cut(s) 400
MspI CCGG 3 cut(s) 53, 424, 603
MspR9I CCNGG 3 cut(s) 424, 425, 748
MvaI CCWGG 1 cut(s) 748
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 344, 411, 452, 717
NciI CCSGG 2 cut(s) 424, 425
NdeII GATC 4 cut(s) 49, 206, 262, 301
NlaIII CATG 3 cut(s) 170, 236, 263
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 609
PfoI TCCNGGA 1 cut(s) 746
PkrI GCNGC 2 cut(s) 634, 677
Ple19I CGATCG 1 cut(s) 304
PleI GAGTC 2 cut(s) 157, 672
PpsI GAGTC 2 cut(s) 157, 672
Psp6I CCWGG 1 cut(s) 746
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 746
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 107, 577
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 49, 206
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 184, 632
RsaI GTAC 4 cut(s) 174, 237, 309, 509
RsaNI GTAC 4 cut(s) 173, 236, 308, 508
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 2 cut(s) 633, 676
Sau3AI GATC 4 cut(s) 49, 206, 262, 301
Sau96I GGNCC 2 cut(s) 107, 577
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 2 cut(s) 157, 673
ScrFI CCNGG 3 cut(s) 424, 425, 748
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 577
SlaI CTCGAG 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 425
SmlI CTYRAG 3 cut(s) 44, 111, 400
SmoI CTYRAG 3 cut(s) 44, 111, 400
SsiI CCGC 1 cut(s) 546
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 422, 423, 746
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 2 cut(s) 317, 462
TaqI TCGA 3 cut(s) 45, 120, 442
TaqII GACCGA 1 cut(s) 489
TatI WGTACW 2 cut(s) 235, 507
TfiI GAWTC 1 cut(s) 609
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 164, 327, 465
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 2 cut(s) 632, 675
Tsp45I GTSAC 1 cut(s) 520
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 3 cut(s) 164, 327, 465
Vha464I CTTAAG 1 cut(s) 400
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 577
XceI RCATGY 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 44
XmaI CCCGGG 1 cut(s) 423
XspI CTAG 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.